Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24] 5,951 sequences; 50,853,738 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq146 93.3 4e-14 >seq146 Length=107015 Score = 93.3 bits (102), Expect = 4e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 || || ||||||| |||| | ||||| || ||||||| ||| ||||| |||||| Sbjct 12389 TCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCAGTT 12330 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 || || ||| |||| ||||| |||||||| |||| ||| || || | || | Sbjct 12329 TTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGCTCG 12270 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 |||| | || ||| || || ||| || || || || || || || || ||||| Sbjct 12269 GCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCAGCGGCCATG 12210 Query 36970 TCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATA 37010 |||| | |||||||| || || ||||||||||| || || Sbjct 12209 TCTATGACGCATTTTTGGGAAATTTCCCAAACCGTCTTGTA 12169 Score = 82.4 bits (90), Expect = 7e-11 Identities = 132/187 (71%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 38292 CAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATAT 38351 ||| ||||| ||||| ||| ||| ||||| | || |||| ||| || || || |||| Sbjct 10419 CAAACCTATGCCACCGGCACTTTTCGATATAATCGCACATTCTTTCAATGTGTCGTATAT 10360 Query 38352 ACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGG 38411 ||||| || ||||| || |||| | | ||||||||| || || ||| || Sbjct 10359 GCCTTCGATGCTGTCTGATTTCATTGTGATCAGAAAACAACTGCTCAACTGCGGCC-TGC 10301 Query 38412 A-GTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAAT 38470 | || || || || || | ||||| || || ||| ||||||||||||| |||| ||| Sbjct 10300 ATGTACCAGCATTGAACAGCGTAGGCGAAGCGTGTGTGAACCATTTTTCTGACATCAAAT 10241 Query 38471 TATATGT 38477 |||| || Sbjct 10240 TATAAGT 10234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468489947611440