Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24]
5,951 sequences; 50,853,738 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq146 93.3 4e-14
>seq146
Length=107015
Score = 93.3 bits (102), Expect = 4e-14
Identities = 153/221 (69%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849
|| || ||||||| |||| | ||||| || ||||||| ||| ||||| ||||||
Sbjct 12389 TCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCAGTT 12330
Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909
|| || ||| |||| ||||| |||||||| |||| ||| || || | || |
Sbjct 12329 TTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGCTCG 12270
Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969
|||| | || ||| || || ||| || || || || || || || || |||||
Sbjct 12269 GCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCAGCGGCCATG 12210
Query 36970 TCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATA 37010
|||| | |||||||| || || ||||||||||| || ||
Sbjct 12209 TCTATGACGCATTTTTGGGAAATTTCCCAAACCGTCTTGTA 12169
Score = 82.4 bits (90), Expect = 7e-11
Identities = 132/187 (71%), Gaps = 2/187 (1%)
Strand=Plus/Minus
Query 38292 CAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATAT 38351
||| ||||| ||||| ||| ||| ||||| | || |||| ||| || || || ||||
Sbjct 10419 CAAACCTATGCCACCGGCACTTTTCGATATAATCGCACATTCTTTCAATGTGTCGTATAT 10360
Query 38352 ACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGG 38411
||||| || ||||| || |||| | | ||||||||| || || ||| ||
Sbjct 10359 GCCTTCGATGCTGTCTGATTTCATTGTGATCAGAAAACAACTGCTCAACTGCGGCC-TGC 10301
Query 38412 A-GTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAAT 38470
| || || || || || | ||||| || || ||| ||||||||||||| |||| |||
Sbjct 10300 ATGTACCAGCATTGAACAGCGTAGGCGAAGCGTGTGTGAACCATTTTTCTGACATCAAAT 10241
Query 38471 TATATGT 38477
|||| ||
Sbjct 10240 TATAAGT 10234
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468489947611440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |