Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24]
5,951 sequences; 50,853,738 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq146 116 5e-21
>seq146
Length=107015
Score = 116 bits (128), Expect = 5e-21
Identities = 126/167 (75%), Gaps = 0/167 (0%)
Strand=Plus/Minus
Query 70839 ATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTT 70898
||||||||| || ||||| ||||| |||| ||||| |||||||| || | |||
Sbjct 12345 ATAGTACATCCCAGTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTT 12286
Query 70899 GGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCC 70958
| ||| | || ||||||||||||||||||| |||||| ||| || ||||| |||||
Sbjct 12285 AGCATAATTCGGCTCGGCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCC 12226
Query 70959 CCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAA 71005
||| || || ||||| | ||||| ||||| | |||||||||||
Sbjct 12225 CCTTTCAGCGGCCATGTCTATGACGCATTTTTGGGAAATTTCCCAAA 12179
Score = 107 bits (118), Expect = 3e-18
Identities = 106/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 71142 TACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCAC 71201
||||||||||||||| || | || | |||||| || | ||| || |||| ||| ||
Sbjct 11970 TACTTGAAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTACGCTTCTAC 11911
Query 71202 TGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAG 71261
||| ||||| || ||||||||||| || || |||||||||||||| || |||| ||| |
Sbjct 11910 TGATTCATTGTTGCCCAAAATTTGCGCTGTCGATGCAGTCGGCATTGGAGCCAACAACAA 11851
Query 71262 ACTATTTCTAAGACCAT 71278
|||||| |||||||
Sbjct 11850 CGAATTTCTCAGACCAT 11834
Score = 100 bits (110), Expect = 4e-16
Identities = 151/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 71935 TATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACAC 71994
|||||| ||| ||||| || ||||| || | |||||||||||||||| || |||
Sbjct 10901 TATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCATGAGGGCAC 10842
Query 71995 ATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 72054
|||| |||||| ||||| || | | | || ||||| || |||||||| ||||| ||
Sbjct 10841 ATCAGTGACCAATCTCCGTCGGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAGAGG 10782
Query 72055 GCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 72114
|| ||| | ||||| || || | || ||| ||||| |||||||| || ||
Sbjct 10781 GCATAAAACAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAGA 10722
Query 72115 AACGCCATAATATCAGAATGCCACGGTTCCAAGTA 72149
|| | | || || | ||||| |||||||| ||
Sbjct 10721 AAATCAAATATGTCTGCGTGCCAAGGTTCCAAATA 10687
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671089275632760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |