Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24] 5,951 sequences; 50,853,738 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq146 116 5e-21 >seq146 Length=107015 Score = 116 bits (128), Expect = 5e-21 Identities = 126/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 70839 ATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTT 70898 ||||||||| || ||||| ||||| |||| ||||| |||||||| || | ||| Sbjct 12345 ATAGTACATCCCAGTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTT 12286 Query 70899 GGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCC 70958 | ||| | || ||||||||||||||||||| |||||| ||| || ||||| ||||| Sbjct 12285 AGCATAATTCGGCTCGGCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCC 12226 Query 70959 CCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAA 71005 ||| || || ||||| | ||||| ||||| | ||||||||||| Sbjct 12225 CCTTTCAGCGGCCATGTCTATGACGCATTTTTGGGAAATTTCCCAAA 12179 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 71142 TACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCAC 71201 ||||||||||||||| || | || | |||||| || | ||| || |||| ||| || Sbjct 11970 TACTTGAAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTACGCTTCTAC 11911 Query 71202 TGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAG 71261 ||| ||||| || ||||||||||| || || |||||||||||||| || |||| ||| | Sbjct 11910 TGATTCATTGTTGCCCAAAATTTGCGCTGTCGATGCAGTCGGCATTGGAGCCAACAACAA 11851 Query 71262 ACTATTTCTAAGACCAT 71278 |||||| ||||||| Sbjct 11850 CGAATTTCTCAGACCAT 11834 Score = 100 bits (110), Expect = 4e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 71935 TATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACAC 71994 |||||| ||| ||||| || ||||| || | |||||||||||||||| || ||| Sbjct 10901 TATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCATGAGGGCAC 10842 Query 71995 ATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 72054 |||| |||||| ||||| || | | | || ||||| || |||||||| ||||| || Sbjct 10841 ATCAGTGACCAATCTCCGTCGGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAGAGG 10782 Query 72055 GCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 72114 || ||| | ||||| || || | || ||| ||||| |||||||| || || Sbjct 10781 GCATAAAACAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAGA 10722 Query 72115 AACGCCATAATATCAGAATGCCACGGTTCCAAGTA 72149 || | | || || | ||||| |||||||| || Sbjct 10721 AAATCAAATATGTCTGCGTGCCAAGGTTCCAAATA 10687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671089275632760