Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24] 5,951 sequences; 50,853,738 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq332 96.9 4e-15 seq326 95.1 1e-14 seq2524 89.7 5e-13 seq1863 89.7 5e-13 seq117 82.4 8e-11 >seq332 Length=28044 Score = 96.9 bits (106), Expect = 4e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 ||||||||| | ||||||||||| |||||||| || || || ||||| || |||||| Sbjct 1443 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 1502 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 || | | ||| || ||||| | |||||| ||||| | ||| | || || |||||| Sbjct 1503 CCCTTCACATTTTCAACTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCGGTC 1562 Query 143162 AATGTTTTTACGAATATTTGCAT 143184 | ||||| || ||||| ||||| Sbjct 1563 AGAGTTTTGACAAATATCTGCAT 1585 Score = 96.9 bits (106), Expect = 4e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 ||||||||| | ||||||||||| |||||||| || || || ||||| || |||||| Sbjct 17800 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 17859 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 || | | ||| || ||||| | |||||| ||||| | ||| | || || |||||| Sbjct 17860 CCCTTCACATTTTCAACTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCGGTC 17919 Query 143162 AATGTTTTTACGAATATTTGCAT 143184 | ||||| || ||||| ||||| Sbjct 17920 AGAGTTTTGACAAATATCTGCAT 17942 Score = 89.7 bits (98), Expect = 5e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 143043 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTT 143102 |||||||| | ||||||||||||||||| || || || |||||||| || |||||| Sbjct 195 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGC 254 Query 143103 GTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCA 143162 ||||| | || | || || | ||||||||||| | || | ||| |||||||| | Sbjct 255 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAA 314 Query 143163 ATGTTTTTACGAATATTTGCAT 143184 || || || || |||||||| Sbjct 315 GAGTCTTAACAAAAATTTGCAT 336 Score = 89.7 bits (98), Expect = 5e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 143043 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTT 143102 |||||||| | ||||||||||||||||| || || || |||||||| || |||||| Sbjct 478 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGC 537 Query 143103 GTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCA 143162 ||||| | || | || || | ||||||||||| | || | ||| |||||||| | Sbjct 538 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAA 597 Query 143163 ATGTTTTTACGAATATTTGCAT 143184 || || || || |||||||| Sbjct 598 GAGTCTTAACAAAAATTTGCAT 619 Score = 86.0 bits (94), Expect = 6e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 143043 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTT 143102 |||||||| | ||||||||||||||||| || || || ||||| || || ||||| Sbjct 26938 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGC 26997 Query 143103 GTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCA 143162 ||||| | || | || || | ||||||||||| | || | ||| |||||||| | Sbjct 26998 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAA 27057 Query 143163 ATGTTTTTACGAATATTTGCAT 143184 || || ||||| |||||||| Sbjct 27058 GAGTCTTAACGAAAATTTGCAT 27079 >seq326 Length=30629 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 143043 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTT 143102 |||||||| | ||||||||||||||||| || || || |||||||| || |||||| Sbjct 17676 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGC 17735 Query 143103 GTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCA 143162 ||||| | || | || || | ||||||||||| | || | ||| |||||||| | Sbjct 17736 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAA 17795 Query 143163 ATGTTTTTACGAATATTTGCAT 143184 || || ||||| |||||||| Sbjct 17796 GAGTCTTAACGAAAATTTGCAT 17817 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 ||||||||| | ||||||||||| |||||||| || || || ||||| || |||||| Sbjct 19766 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 19825 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 || | | ||| | ||||| | |||||| ||||| | ||| | || || || ||| Sbjct 19826 CCCTTCACATTTTCAATTGTGTCAGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 19885 Query 143162 AATGTTTTTACGAATATTTGCAT 143184 | ||||| || ||||| ||||| Sbjct 19886 AGAGTTTTCACAAATATCTGCAT 19908 Score = 86.0 bits (94), Expect = 6e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 143043 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTT 143102 |||||||| | ||||||||||||||||| || || || |||||||| || |||||| Sbjct 18521 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGC 18580 Query 143103 GTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCA 143162 ||||| | || | || || | ||||||||||| | || | || |||||||| | Sbjct 18581 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAATGTGATGGTTTTGCCGGTGA 18640 Query 143163 ATGTTTTTACGAATATTTGCAT 143184 || || || || |||||||| Sbjct 18641 GAGTCTTAACAAAAATTTGCAT 18662 >seq2524 Length=468 Score = 89.7 bits (98), Expect = 5e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 143043 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTT 143102 |||||||| | ||||||||||||||||| || || || |||||||| || |||||| Sbjct 231 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGC 290 Query 143103 GTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCA 143162 ||||| | || | || || | ||||||||||| | || | ||| |||||||| | Sbjct 291 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAA 350 Query 143163 ATGTTTTTACGAATATTTGCAT 143184 || || || || |||||||| Sbjct 351 GAGTCTTAACAAAAATTTGCAT 372 >seq1863 Length=625 Score = 89.7 bits (98), Expect = 5e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 143043 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTT 143102 |||||||| | ||||||||||||||||| || || || |||||||| || |||||| Sbjct 148 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGC 89 Query 143103 GTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCA 143162 ||||| | ||| | || || | || |||||||| | || | ||| |||||||| | Sbjct 88 CTTTTACATTTTCTATTGTATCAGATGGCTCTACTTCCAAGGTGATCGTTTTGCCGGTAA 29 Query 143163 ATGTTTTTACGAATATTTGCAT 143184 || || || || |||||||| Sbjct 28 GAGTCTTAACAAAAATTTGCAT 7 Score = 89.7 bits (98), Expect = 5e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 143043 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTT 143102 |||||||| | ||||||||||||||||| || || || |||||||| || |||||| Sbjct 431 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGC 372 Query 143103 GTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCA 143162 ||||| | || | || || | ||||||||||| | || | ||| |||||||| | Sbjct 371 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAA 312 Query 143163 ATGTTTTTACGAATATTTGCAT 143184 || || || || |||||||| Sbjct 311 GAGTCTTAACAAAAATTTGCAT 290 >seq117 Length=123509 Score = 82.4 bits (90), Expect = 8e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 ||||||||| | |||| ||||||||||| || || |||||||| || || |||||| Sbjct 9014 TTACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTA 9073 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 ||||| | ||| | ||| || | || |||||||| | || | || || || || Sbjct 9074 CTTTTTACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 9133 Query 143162 AATGTTTTTACGAATATTTGCAT 143184 |||||||| || || || ||||| Sbjct 9134 AATGTTTTCACAAAAATCTGCAT 9156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506976684466320