Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24]
5,951 sequences; 50,853,738 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq146 105 1e-17
>seq146
Length=107015
Score = 105 bits (116), Expect = 1e-17
Identities = 153/214 (71%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 96906 GCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAA--A 96963
|| ||||| ||||||||||||||||| ||| | ||||| || || || ||| ||| |
Sbjct 10681 GCGGTCTATTTGGAACCTTGGCACGCAGACATATTTGA--TTTTCTTGACGCGAAAAAGA 10738
Query 96964 ACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATT 97023
|| | ||| | ||||| |||||| | || ||||||||||| |||||| | || |||
Sbjct 10739 ACACAGGCGTCGAAGAAAACCGAGCCCGAGATTTGTTTTATGCCCTCTGGATACCTGATC 10798
Query 97024 TGTTCATGAAGCGCGTCAACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCAC 97083
| |||||||||||| | | | || || | ||| || |||||||| | | |
Sbjct 10799 TATTCATGAAGCGCATTGAAGCCGACGGAGATTGGTCACTGATGTGCCCTCATGAATGTC 10858
Query 97084 CCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGA 97117
| || || | |||| |||||||| ||||||||
Sbjct 10859 CTGGATTGGCGGATTTGTGGGGCGATGAGTTTGA 10892
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741004074458760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |