Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24] 5,951 sequences; 50,853,738 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq146 105 1e-17 >seq146 Length=107015 Score = 105 bits (116), Expect = 1e-17 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 96906 GCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAA--A 96963 || ||||| ||||||||||||||||| ||| | ||||| || || || ||| ||| | Sbjct 10681 GCGGTCTATTTGGAACCTTGGCACGCAGACATATTTGA--TTTTCTTGACGCGAAAAAGA 10738 Query 96964 ACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATT 97023 || | ||| | ||||| |||||| | || ||||||||||| |||||| | || ||| Sbjct 10739 ACACAGGCGTCGAAGAAAACCGAGCCCGAGATTTGTTTTATGCCCTCTGGATACCTGATC 10798 Query 97024 TGTTCATGAAGCGCGTCAACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCAC 97083 | |||||||||||| | | | || || | ||| || |||||||| | | | Sbjct 10799 TATTCATGAAGCGCATTGAAGCCGACGGAGATTGGTCACTGATGTGCCCTCATGAATGTC 10858 Query 97084 CCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGA 97117 | || || | |||| |||||||| |||||||| Sbjct 10859 CTGGATTGGCGGATTTGTGGGGCGATGAGTTTGA 10892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741004074458760