Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24]
5,951 sequences; 50,853,738 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq1863 109 4e-19
seq332 109 4e-19
seq2524 104 2e-17
seq326 104 2e-17
seq5215 93.3 3e-14
>seq1863
Length=625
Score = 109 bits (120), Expect = 4e-19
Identities = 108/140 (77%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283
||||| | |||| |||||| || || ||||||||||||||| || ||||||||
Sbjct 429 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 370
Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343
|||||| | ||||| ||||| |||||| |||||||| || ||||| || || |||
Sbjct 369 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 310
Query 15344 GTTTTTACAAAAATTTGCAT 15363
|| || ||||||||||||||
Sbjct 309 GTCTTAACAAAAATTTGCAT 290
Score = 104 bits (114), Expect = 2e-17
Identities = 107/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283
||||| | |||| |||||| || || ||||||||||||||| || ||||||||
Sbjct 146 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 87
Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343
|||||| ||||||| ||||| ||||| || ||||| || ||||| || || |||
Sbjct 86 TTTACATTTTCTATTGTATCAGATGGCTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 27
Query 15344 GTTTTTACAAAAATTTGCAT 15363
|| || ||||||||||||||
Sbjct 26 GTCTTAACAAAAATTTGCAT 7
>seq332
Length=28044
Score = 109 bits (120), Expect = 4e-19
Identities = 108/140 (77%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283
||||| | |||| |||||| || || ||||||||||||||| || ||||||||
Sbjct 197 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 256
Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343
|||||| | ||||| ||||| |||||| |||||||| || ||||| || || |||
Sbjct 257 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 316
Query 15344 GTTTTTACAAAAATTTGCAT 15363
|| || ||||||||||||||
Sbjct 317 GTCTTAACAAAAATTTGCAT 336
Score = 104 bits (114), Expect = 2e-17
Identities = 107/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283
||||| | |||| |||||| || || ||||||||||||||| || ||||||||
Sbjct 480 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 539
Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343
|||||| | ||||| ||||| |||||| || ||||| || ||||| || || |||
Sbjct 540 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 599
Query 15344 GTTTTTACAAAAATTTGCAT 15363
|| || ||||||||||||||
Sbjct 600 GTCTTAACAAAAATTTGCAT 619
Score = 102 bits (112), Expect = 6e-17
Identities = 112/149 (75%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
|| || || ||||| | |||||||||||||| || |||||||||||| || ||
Sbjct 27490 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGT 27549
Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334
||||| | |||||| | ||||| ||||| |||||| || ||||| || |||||
Sbjct 27550 ATTTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTG 27609
Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| || ||||| || ||||||||||||||
Sbjct 27610 CCGGTAAGAGTCTTAACAAAAATTTGCAT 27638
Score = 100 bits (110), Expect = 2e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283
||||| | ||||||||||| || || ||||||||| ||||| || |||||||
Sbjct 26375 CCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 26434
Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343
|||||| | ||||| ||||| |||||| |||||||| || ||||| || || |||
Sbjct 26435 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 26494
Query 15344 GTTTTTACAAAAATTTGCAT 15363
|| || || |||||||||||
Sbjct 26495 GTCTTAACGAAAATTTGCAT 26514
Score = 98.7 bits (108), Expect = 7e-16
Identities = 111/149 (74%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
|||| || ||||| | ||||||||||| || || |||||||||||| || ||
Sbjct 26648 AATTACTTACCAGCAAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCCTTATCCTGT 26707
Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334
||||| | |||||| | ||||| ||||| |||||| || ||||| || |||||
Sbjct 26708 ATTTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTG 26767
Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| || ||||| || ||||||||||||||
Sbjct 26768 CCGGTAAGAGTCTTAACAAAAATTTGCAT 26796
Score = 98.7 bits (108), Expect = 7e-16
Identities = 111/149 (74%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
|||| || ||||| | |||||||| ||||| || |||||||||||| || ||
Sbjct 27211 AATTACTTACCAGCAAAAATCAAACGCTGTTGATCCGGTGGAATTCCTTCCTTATCCTGT 27270
Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334
||||| | |||||| | ||||| ||||| |||||| || ||||| || |||||
Sbjct 27271 ATTTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTG 27330
Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| || ||||| || ||||||||||||||
Sbjct 27331 CCGGTAAGAGTCTTAACAAAAATTTGCAT 27359
Score = 98.7 bits (108), Expect = 7e-16
Identities = 111/149 (74%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
|| || || ||||| | |||||||||||||| || |||||||| ||||| ||
Sbjct 27769 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGT 27828
Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334
||||| | || ||| ||||||| ||||| |||||| || || || ||||||||
Sbjct 27829 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAACGTGATGGTTTTC 27888
Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| || ||||| || ||||||||||||||
Sbjct 27889 CCAGTAAGAGTCTTAACAAAAATTTGCAT 27917
Score = 95.1 bits (104), Expect = 9e-15
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283
||||| | |||| |||||| || || |||||||||||| || || |||||||
Sbjct 26940 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 26999
Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343
|||||| | ||||| ||||| |||||| |||||||| || ||||| || || |||
Sbjct 27000 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 27059
Query 15344 GTTTTTACAAAAATTTGCAT 15363
|| || || |||||||||||
Sbjct 27060 GTCTTAACGAAAATTTGCAT 27079
Score = 91.5 bits (100), Expect = 1e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280
|| ||||| | |||| ||||||||| ||| ||||||||| ||||| || ||||||
Sbjct 1443 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 1502
Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340
| ||| ||| |||| | || || ||| || || | ||||||||||| || |||
Sbjct 1503 CCCTTCACATTTTCAACTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCGGTC 1562
Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363
|||||||| ||||| || |||||
Sbjct 1563 AGAGTTTTGACAAATATCTGCAT 1585
Score = 91.5 bits (100), Expect = 1e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280
|| ||||| | |||| ||||||||| ||| ||||||||| ||||| || ||||||
Sbjct 17800 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 17859
Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340
| ||| ||| |||| | || || ||| || || | ||||||||||| || |||
Sbjct 17860 CCCTTCACATTTTCAACTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCGGTC 17919
Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363
|||||||| ||||| || |||||
Sbjct 17920 AGAGTTTTGACAAATATCTGCAT 17942
>seq2524
Length=468
Score = 104 bits (114), Expect = 2e-17
Identities = 107/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283
||||| | |||| |||||| || || ||||||||||||||| || ||||||||
Sbjct 233 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 292
Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343
|||||| | ||||| ||||| |||||| || ||||| || ||||| || || |||
Sbjct 293 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 352
Query 15344 GTTTTTACAAAAATTTGCAT 15363
|| || ||||||||||||||
Sbjct 353 GTCTTAACAAAAATTTGCAT 372
>seq326
Length=30629
Score = 104 bits (114), Expect = 2e-17
Identities = 107/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283
||||| | |||| |||||| || || ||||||||||||||| || ||||||||
Sbjct 18523 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 18582
Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343
|||||| | ||||| ||||| |||||| || || || |||||||| || || |||
Sbjct 18583 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAATGTGATGGTTTTGCCGGTGAGA 18642
Query 15344 GTTTTTACAAAAATTTGCAT 15363
|| || ||||||||||||||
Sbjct 18643 GTCTTAACAAAAATTTGCAT 18662
Score = 100 bits (110), Expect = 2e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283
||||| | |||| |||||| || || ||||||||||||||| || ||||||||
Sbjct 17678 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 17737
Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343
|||||| | ||||| ||||| |||||| || ||||| || ||||| || || |||
Sbjct 17738 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 17797
Query 15344 GTTTTTACAAAAATTTGCAT 15363
|| || || |||||||||||
Sbjct 17798 GTCTTAACGAAAATTTGCAT 17817
Score = 98.7 bits (108), Expect = 7e-16
Identities = 111/149 (74%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
|||| || ||||| | |||||||||||||| || |||||||||||| || ||
Sbjct 18231 AATTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGT 18290
Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334
||||| | |||||| | ||||| ||||| |||||| || ||||| || |||||
Sbjct 18291 ATTTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTG 18350
Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| || ||||| || |||||||| |||||
Sbjct 18351 CCGGTAAGAGTCTTAACAAAAATCTGCAT 18379
Score = 96.9 bits (106), Expect = 3e-15
Identities = 109/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280
|| ||||| | |||| ||||||||| ||| ||||||||| ||||| || ||||||
Sbjct 19766 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 19825
Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340
| ||| ||| |||| || || || ||| || || | ||||||||||| || |||
Sbjct 19826 CCCTTCACATTTTCAATTGTGTCAGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 19885
Query 15341 AGAGTTTTTACAAAAATTTGCATATT 15366
|||||||| ||||| || ||||| ||
Sbjct 19886 AGAGTTTTCACAAATATCTGCATTTT 19911
Score = 82.4 bits (90), Expect = 6e-11
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283
||||| | |||||||||||||| || |||||||||||| || || ||||| |
Sbjct 17958 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 18017
Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343
|| ||| |||| || ||||| |||||| || || || || ||||| || || ||
Sbjct 18018 TTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCAGTAAGG 18077
Query 15344 GTTTTTACAAAAATTTGCAT 15363
|| || || |||||||||||
Sbjct 18078 GTCTTAACGAAAATTTGCAT 18097
Score = 82.4 bits (90), Expect = 6e-11
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283
||||| | |||||||||||||| || |||||||||||| || || ||||| |
Sbjct 18803 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 18862
Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343
|| ||| |||| || ||||| |||||| || || || || ||||| || || ||
Sbjct 18863 TTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCAGTAAGG 18922
Query 15344 GTTTTTACAAAAATTTGCAT 15363
|| || || |||||||||||
Sbjct 18923 GTCTTAACGAAAATTTGCAT 18942
>seq5215
Length=241
Score = 93.3 bits (102), Expect = 3e-14
Identities = 110/149 (74%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
|||| || ||||| | |||||||||||||| || |||||||| ||||| ||
Sbjct 87 AATTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGT 146
Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334
||||| | || ||| ||||||| ||||| ||||| || ||||| || |||||
Sbjct 147 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGCTCTACTTCCAAGGTGATCGTTTTG 206
Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| || ||||| || ||||||||||||||
Sbjct 207 CCGGTAAGAGTCTTAACAAAAATTTGCAT 235
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 362152931934891
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |