Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24] 5,951 sequences; 50,853,738 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq12 98.7 9e-16 >seq12 Length=399341 Score = 98.7 bits (108), Expect = 9e-16 Identities = 187/270 (69%), Gaps = 8/270 (3%) Strand=Plus/Minus Query 5503 GCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCTTC 5562 ||| ||||| ||||||||| ||| || | |||||| | ||| || | | | ||||| Sbjct 231324 GCCAGTGGAACCGAATCCGGCTGTTCCACGTTCCGTGTTGTCAAG--ATGAGAT-TCTTC 231268 Query 5563 CACA---TCGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCC-CGTCT 5618 ||| | || || || || || || ||||| || || ||||| || || ||| | Sbjct 231267 GACAATATTTGGCAAAGCGATTCGTTCACAAATCAGTTGAGCAATTCGATCACCACGT-T 231209 Query 5619 TTACCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGT 5678 | || | ||||| | || ||| || ||||| | | || || || ||||| | ||| | Sbjct 231208 TCACGTGAAAATCTTGGTCGCCAAAATTGAAAACAATTACTCCAACATTGCCCCTGTAAT 231149 Query 5679 CGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGG 5738 | || |||| ||||||||||| | ||||||| |||||| | |||| ||| || || | Sbjct 231148 CTGCATCTACAACGCCCGCGCCGATGTCGATGCCGTGCTTCAAAGCCAAGCCAGATCGAG 231089 Query 5739 GAGCCACGCGGCCGTAGCACCCATCGGGAA 5768 | || | ||| || ||||| || | |||| Sbjct 231088 GTGCAATGCGACCATAGCAGCCGACAGGAA 231059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430023209095112