Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24] 5,951 sequences; 50,853,738 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq17 205 1e-48 seq15 150 3e-32 seq7 149 1e-31 seq300 141 1e-29 >seq17 Length=354414 Score = 205 bits (226), Expect = 1e-48 Identities = 209/273 (77%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| | |||||| |||||||||||||||||||| ||||| || || Sbjct 272350 CGCGAAGCGTCATCGCAAAGTTCTTCGTGATAACATCCAAGGAATCACGAAGCCTGCGAT 272409 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || || |||| ||||||||||| || |||||| || || ||| | |||||||| | Sbjct 272410 TCGACGATTGGCACGTCGTGGTGGTGTAAAGCGTATCAGCGGCTTGATTTATGAAGAAAC 272469 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| ||| |||||| |||||| | | ||| | | ||||||| | ||| ||| Sbjct 272470 TCGTGCTGTATTGAAGTCCTTCCTTGAAAATGTTGTTCGTGATGCTGTAACGTATTGCGA 272529 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||||| | || ||||| || |||||||| | |||||||| |||||| | ||||| Sbjct 272530 ACACGCTAAGAGGAAAACTGTTACAGCCATGGATGTTGTCTATGCGTTGAAAAGACAAGG 272589 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTC 16704 ||| | |||||||| || || |||||| ||| Sbjct 272590 CCGAACCATTTATGGGTTCGGTGGTTAATTTTC 272622 >seq15 Length=366322 Score = 150 bits (166), Expect = 3e-32 Identities = 198/272 (73%), Gaps = 2/272 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || || ||||||| | | || |||||||| ||||||||||| || || || || Sbjct 232320 GCAAAACGCCATCGCAAGGTTTTGCGTGATAACATTCAAGGAATCACGAAACCGGCAATT 232261 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || ||||||| |||||||| || ||||| || || ||| |||||||||| | | Sbjct 232260 CGACGATTGGCTCGACGTGGTGGTGTGAAGCGGATCAGCGGCTTGATCTATGAAGAAACT 232201 Query 16553 CGTGATGTTTTGAAGATCTTC-CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| ||||| ||||| || | | ||| | | |||||| || ||| || Sbjct 232200 CGAGCTGTGTTGAA-ATCTTTTCTTGAAAATGTTGTTCGAGATGCTGTCACCTACTGTGA 232142 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || ||| | || || || ||| | |||||| | ||||||||||||||| | ||||| Sbjct 232141 ACATGCCAAAAGAAAAACCGTTACCGCGATGGATGTTGTCTATGCATTGAAAAGACAAGG 232082 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTT 16703 || | |||||||||||||| |||||| || Sbjct 232081 TCGAACCATTTATGGTTTTGGTGGTTAATTTT 232050 >seq7 Length=438946 Score = 149 bits (164), Expect = 1e-31 Identities = 189/260 (73%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 ||||||||||| | | | | | || ||||| || |||||||| || || ||||| || Sbjct 419467 GCTAAGCGTCACAGAAAAGTTTTGCGTGATAATATTCAAGGAATAACAAAACCAGCAATT 419526 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||| |||||||||||||||| || |||||| | || || || | |||||||||| Sbjct 419527 CGGCGTTTGGCTCGTCGTGGTGGTGTAAAGCGTATTTCCGGTTTAATATATGAAGAGACC 419586 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| |||||||| || | | | |||| | | |||||| | ||| ||| Sbjct 419587 CGTGCAGTTTTGAAAGCTTTTTTGGAAAACGTTGTTCGTGATGCAGTTACCTACTGCGAA 419646 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || |||||||||||||| || | |||||| | || ||||| | |||||||||||| Sbjct 419647 CATGCGAAACGTAAGACTGTTACAGCAATGGATGTGGTGTATGCGCTAAAACGTCAAGGC 419706 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | ||||| || || || Sbjct 419707 CGAACTATTTACGGCTTCGG 419726 >seq300 Length=39405 Score = 141 bits (156), Expect = 1e-29 Identities = 196/273 (72%), Gaps = 1/273 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | | | || |||||||| || |||||||| || || || || Sbjct 4598 GCCAAGCGTCATCGTAAGGTTTTGCGTGATAACATTCAGGGAATCACGAAACCGGCAATT 4657 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| |||| || ||||||||||| || || | || ||| | |||||||| | | Sbjct 4658 CGTCGATTGGCACGCCGTGGTGGAGTGAAACGGATAAGCGGCTTGATTTATGAAGAAACT 4717 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || ||||| |||||| ||| ||| | | |||||| || ||| ||| Sbjct 4718 CGAGCCGTGTTGAAATCCTTCCTTGAGAATGTTGTTCGCGATGCTGTCACTTATTGCGAA 4777 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || ||| | ||||| ||||| | |||||| | || ||||| |||||| | ||||| Sbjct 4778 CATGCGAAAAGGAAGACCGTCACGGCAATGGATGTAGTGTATGCGTTGAAAAGACAAGGG 4837 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA-TCTTC 16704 || | || ||||||||||| ||||| ||||| Sbjct 4838 CGAACCATCTATGGTTTTGGTGGTTAACTCTTC 4870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79069758959043