Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24] 5,951 sequences; 50,853,738 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq146 116 5e-21 seq263 82.4 1e-10 >seq146 Length=107015 Score = 116 bits (128), Expect = 5e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 61986 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 62045 ||||||| ||||||||||| | | ||| || || || | | ||||||||| || Sbjct 12392 TTGTCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCA 12333 Query 62046 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 62105 ||||| ||||| |||| ||||| |||||||| || | ||| | |||| |||| Sbjct 12332 GTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGC 12273 Query 62106 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62165 || ||||| || ||||||| || || ||| || ||||| |||||||| || || ||| Sbjct 12272 TCGGCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCAGCGGCC 12213 Query 62166 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAA 62199 || | ||||| ||||| | ||||||||||| Sbjct 12212 ATGTCTATGACGCATTTTTGGGAAATTTCCCAAA 12179 Score = 113 bits (124), Expect = 6e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 63129 TACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACAC 63188 || ||| ||| ||||| || ||||| | || |||||||||||||||||| || ||| Sbjct 10901 TATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCATGAGGGCAC 10842 Query 63189 ATCAACGACCACTCTCCGTCATCCTTCACT-CGTTTCATAAAGAGATCAGGAATCCAAAG 63247 |||| ||||| |||||||| ||||| | || ||||| || |||||||| ||||| || Sbjct 10841 ATCAGTGACCAATCTCCGTC-GGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAGAG 10783 Query 63248 AGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 63307 || ||| | ||||| || || | ||| ||| ||||| |||||||| || || Sbjct 10782 GGCATAAAACAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAG 10723 Query 63308 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 63343 || | | || || | ||||| |||||||| || Sbjct 10722 AAAATCAAATATGTCTGCGTGCCAAGGTTCCAAATA 10687 Score = 104 bits (114), Expect = 3e-17 Identities = 175/248 (71%), Gaps = 9/248 (4%) Strand=Plus/Minus Query 62543 TTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTC 62602 ||| |||||||| ||||| || || ||| ||| || |||||||| || || | Sbjct 11691 TTGAAGAATACCCTTACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCAAACTGTTT 11632 Query 62603 AGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATT 62662 || | || ||||| ||||| ||| | ||||| |||||||| || || |||||||| Sbjct 11631 TGCCAAATCGCAACTGCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTTATT 11572 Query 62663 TAG--ATCTTG-TGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGC 62719 | |||| | | |||| || | ||||| ||||| | | |||||| || ||||| Sbjct 11571 CAACAATCTAGCTTCTTC--GGAT-TCAAACGGATATCGCATCAAAATAAAAGCATCCGC 11515 Query 62720 TAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGG 62779 |||||||| ||||||||||| || |||| ||| | || ||||| |||| || | | Sbjct 11514 CAATCCTTGTACACCAATACCAATTGGTCGATGACGTTTGTTAGACTTTTCTGCCT---G 11458 Query 62780 AATAGGAT 62787 || ||||| Sbjct 11457 AAAAGGAT 11450 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 62336 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62395 ||||||||||||||| || | || | ||||| || | ||| || |||| ||| || Sbjct 11970 TACTTGAAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTACGCTTCTAC 11911 Query 62396 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62455 || ||||| || ||||||||||| || || |||||||||||||| || |||| ||| || Sbjct 11910 TGATTCATTGTTGCCCAAAATTTGCGCTGTCGATGCAGTCGGCATTGGAGCCAACAACAA 11851 Query 62456 ACTATTTCTAAGACCGTA 62473 |||||| ||||| || Sbjct 11850 CGAATTTCTCAGACCATA 11833 >seq263 Length=55217 Score = 82.4 bits (90), Expect = 1e-10 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 33000 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33059 ||| |||||| ||| |||||||| || || |||||||||||||| || ||||| ||||| Sbjct 24288 CATCACTCCCGCTTTCTGGTATTCGCCGACGCGTTTTTCGAAAAAGTTCGTTTTACCTTC 24229 Query 33060 CAATGATATATTTTCCATGAAATCAAACGGATT 33092 || || || |||||| || || |||||||| Sbjct 24228 CAGCGAAATCAATTCCATAAAGTCGAACGGATT 24196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622900860515160