Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24] 5,951 sequences; 50,853,738 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq146 91.5 1e-13 >seq146 Length=107015 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/220 (70%), Gaps = 6/220 (3%) Strand=Plus/Minus Query 147113 CACGGTGAATTGAATCGTGTTTGCTGCGGGTTTGGTTCTCAAATAGTACATGCCCGTTTT 147172 ||||||||||||||| | | |||| || |||||||||||||||||||| || ||||| Sbjct 12387 CACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCAGTTTT 12328 Query 147173 TAAACCCTTTTCCCAAGAATAGTCGTGAATGGATGATAAAACTTT---ATAGGTTGGATT 147229 | |||||| | ||| ||| || || |||| || ||| ||| | || | Sbjct 12327 CAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAA---TTTAGCATAATTCGGCTC 12271 Query 147230 GGCCACAAAAAGATTGAGCGATTGGCTCTGATCGATGTAAGGTCCCCGCTCTGCGGCCAT 147289 ||| | || ||| | ||| ||| || || ||| | | ||||| || |||||||| Sbjct 12270 GGCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCAGCGGCCAT 12211 Query 147290 GTCCAACACTACTTTTTGTTTAATTTCCCAAGCGGTCTTG 147329 ||| | || |||||| |||||||||| | |||||| Sbjct 12210 GTCTATGACGCATTTTTGGGAAATTTCCCAAACCGTCTTG 12171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478626793500720