Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24] 5,951 sequences; 50,853,738 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq37 129 2e-24 seq146 84.2 6e-11 >seq37 Length=276709 Score = 129 bits (142), Expect = 2e-24 Identities = 163/222 (73%), Gaps = 4/222 (2%) Strand=Plus/Minus Query 111313 ATTTTCCACTTCTCACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAACTTCTGT 111372 |||||||||| || |||||||| || | ||||| ||| | ||||||||| | || | Sbjct 92112 ATTTTCCACTGCTTACAACAAAACGCGTCTTTTGGAGAGGAGTGGTCGAAGAATTGCTTT 92053 Query 111373 GGTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGG 111432 |||| || | ||||| || ||||| || | ||| ||| || ||||| || ||||||| Sbjct 92052 GGTTCATCAGTGGAAGCACCAATGCTAAACAGCTTTCAGAGAAGAATGTTAACATTTGGG 91993 Query 111433 ATGGAAATGGATCACGTGACTTTCTAGATTCAGT--TGGTCTTGTCGACAACGAAGAAGG 111490 |||||||| || | || || ||||| |||| || || | | | |||||||| Sbjct 91992 ATGGAAATTCTTCCAGAGAATTCCTAGA--CAGTAGAGGACTGTACAATTATGAAGAAGG 91935 Query 111491 TGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGG 111532 |||| | || || ||||| || || ||||||||||||||||| Sbjct 91934 TGATTTGGGGCCTGTTTATGGTTTCCAATGGCGCCACTTTGG 91893 >seq146 Length=107015 Score = 84.2 bits (92), Expect = 6e-11 Identities = 164/240 (68%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 363838 GGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTC 363897 ||||||||||| | ||| | || ||| || || || || ||||| |||||||| | | Sbjct 10672 GGGGCGTTTGCGGTCTATTTGGAACCTTGGCACGCAGACATATTTGATTTTCTTGA-CGC 10730 Query 363898 CGGAAA-AACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGT 363956 ||| ||||| || || ||| || || || ||| |||| ||||| || ||| | Sbjct 10731 GAAAAAGAACACAGGCGTCGAAGAAAACCGAGCCCGAGATTTGTTTTATGCCCTCTGGAT 10790 Query 363957 TTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACA 364016 |||| | || ||||||||| | || || | |||||||||| | ||||| || Sbjct 10791 ACCTGATCTATTCATGAAGCGCATTGAAGCCGACGGAGATTGGTCACTGATGTGCCCTCA 10850 Query 364017 CGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTA 364076 |||||||| || | | ||| | ||||| || || | || ||||||||||||| Sbjct 10851 TGAATGTCCTGGATTGGCGGATTTGTGGGGCGATGAGTTTGAAAAATTATACGAAAAGTA 10910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303254222953682