Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24] 5,951 sequences; 50,853,738 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq799 122 6e-23 seq353 122 6e-23 seq220 122 6e-23 seq830 116 2e-21 seq697 116 2e-21 seq398 116 2e-21 seq360 116 2e-21 seq332 91.5 1e-13 seq326 91.5 1e-13 seq117 82.4 5e-11 >seq799 Length=2163 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| | ||||| || Sbjct 1480 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAAGGAATCTTGT 1539 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||| |||||||||||||||||||||| Sbjct 1540 TGATCCATTCATACGCGTCACTAATTAGATGACGA 1574 >seq353 Length=23439 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| | ||||| || Sbjct 1430 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAAGGAATCTTGT 1489 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||| |||||||||||||||||||||| Sbjct 1490 TGATCCATTCATACGCGTCACTAATTAGATGACGA 1524 Score = 105 bits (116), Expect = 4e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 6551 CTCTCTCTTCAGAGTTCTTTTCAACTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCGT 6610 Query 20007 GGTAATATTTAGCCTT 20022 ||||||||| ||| Sbjct 6611 ACGAATATTTAGTCTT 6626 >seq220 Length=74189 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| | ||||| || Sbjct 69844 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAAGGAATCTTGT 69903 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||| |||||||||||||||||||||| Sbjct 69904 TGATCCATTCATACGCGTCACTAATTAGATGACGA 69938 >seq830 Length=2015 Score = 116 bits (128), Expect = 2e-21 Identities = 82/94 (87%), Gaps = 5/94 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||| ||||||||||||||||||| | ||||| || Sbjct 1776 AAGCCCGTTCCCTTGGCTGTGGTTACGCTAGATAGTAGATAGGGACAGAAGGAATCTTGT 1717 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACG 25990 | |||| ||||| ||||||||||||||||||||| Sbjct 1716 TGATCCATTCATACGCGTCACTAATTAGATGACG 1683 >seq697 Length=3113 Score = 116 bits (128), Expect = 2e-21 Identities = 82/94 (87%), Gaps = 5/94 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||| ||||||||||||||||||| | ||||| || Sbjct 1338 AAGCCCGTTCCCTTGGCTGTGGTTACGCTAGATAGTAGATAGGGACAGAAGGAATCTTGT 1397 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACG 25990 | |||| ||||| ||||||||||||||||||||| Sbjct 1398 TGATCCATTCATACGCGTCACTAATTAGATGACG 1431 >seq398 Length=15062 Score = 116 bits (128), Expect = 2e-21 Identities = 82/94 (87%), Gaps = 5/94 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||| ||||||||||||||||||| | ||||| || Sbjct 7601 AAGCCCGTTCCCTTGGCTGTGGTTACGCTAGATAGTAGATAGGGACAGAAGGAATCTTGT 7542 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACG 25990 | |||| ||||| ||||||||||||||||||||| Sbjct 7541 TGATCCATTCATACGCGTCACTAATTAGATGACG 7508 >seq360 Length=20988 Score = 116 bits (128), Expect = 2e-21 Identities = 82/94 (87%), Gaps = 5/94 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||| ||||||||||||||||||| | ||||| || Sbjct 5200 AAGCCCGTTCCCTTGGCTGTGGTTACGCTAGATAGTAGATAGGGACAGAAGGAATCTTGT 5141 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACG 25990 | |||| ||||| ||||||||||||||||||||| Sbjct 5140 TGATCCATTCATACGCGTCACTAATTAGATGACG 5107 >seq332 Length=28044 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 38178 CCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGC 38237 || ||||| || || || |||||||| | |||| |||||||||||| ||| || Sbjct 1114 CCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCTTGCTT 1173 Query 38238 TTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAG 38297 || ||||| | | |||||| |||||||| | |||||| ||||| || ||||| Sbjct 1174 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 1233 Query 38298 GTTTTCACGAATATCTGCAT 38317 |||||||| ||||||||||| Sbjct 1234 GTTTTCACAAATATCTGCAT 1253 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || || ||||| || || ||||||||||||| || | || ||||| ||| |||||| Sbjct 1443 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 1502 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 ||||||||| | || || ||| ||| ||||| | ||||| ||||| || ||| Sbjct 1503 CCCTTCACATTTTCAACTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCGGTC 1562 Query 38295 AAGGTTTTCACGAATATCTGCAT 38317 | ||||| || ||||||||||| Sbjct 1563 AGAGTTTTGACAAATATCTGCAT 1585 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || || ||||| || || ||||||||||||| || | || ||||| ||| |||||| Sbjct 17800 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 17859 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 ||||||||| | || || ||| ||| ||||| | ||||| ||||| || ||| Sbjct 17860 CCCTTCACATTTTCAACTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCGGTC 17919 Query 38295 AAGGTTTTCACGAATATCTGCAT 38317 | ||||| || ||||||||||| Sbjct 17920 AGAGTTTTGACAAATATCTGCAT 17942 >seq326 Length=30629 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 38178 CCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGC 38237 || ||||| || || || |||||||| | |||| |||||||||||| ||| || Sbjct 19437 CCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCTTGCTT 19496 Query 38238 TTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAG 38297 || ||||| | | |||||| |||||||| | |||||| ||||| || ||||| Sbjct 19497 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 19556 Query 38298 GTTTTCACGAATATCTGCAT 38317 |||||||| ||||||||||| Sbjct 19557 GTTTTCACAAATATCTGCAT 19576 Score = 84.2 bits (92), Expect = 1e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || || ||||| || || ||||||||||||| || | || ||||| ||| |||||| Sbjct 19766 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 19825 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 ||||||||| | | || || ||| ||||| | ||||| ||||| || ||| Sbjct 19826 CCCTTCACATTTTCAATTGTGTCAGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 19885 Query 38295 AAGGTTTTCACGAATATCTGCATGTT 38320 | |||||||| ||||||||||| || Sbjct 19886 AGAGTTTTCACAAATATCTGCATTTT 19911 Score = 82.4 bits (90), Expect = 5e-11 Identities = 82/105 (78%), Gaps = 1/105 (1%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| | || ||| | ||||||||| |||||||| |||||||| |||||||||| Sbjct 17532 CATT-CCACCGCGCAGACGAAGCACCAAATGCAGAGTGCTTTCCTTTTGGATATTGTAAT 17590 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTA 38190 ||||||| | |||| || ||||| ||||| ||| |||| Sbjct 17591 CAGACAATGTTCTACCGTCTTCCAATTGCTTTCCTAAAAACATTA 17635 >seq117 Length=123509 Score = 82.4 bits (90), Expect = 5e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || || ||||| |||| | ||| ||||| | || | |||||| || ||| |||||| Sbjct 10269 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 10328 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 || ||||| | || || ||| ||||||||||| ||| |||||||| || || Sbjct 10329 CTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 10388 Query 38295 AAGGTTTTCACGAATATCTGCAT 38317 | || ||||||||||||||||| Sbjct 10389 AGTGTCTTCACGAATATCTGCAT 10411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334922907012281