Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24]
5,951 sequences; 50,853,738 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq799 122 6e-23
seq353 122 6e-23
seq220 122 6e-23
seq830 116 2e-21
seq697 116 2e-21
seq398 116 2e-21
seq360 116 2e-21
seq332 91.5 1e-13
seq326 91.5 1e-13
seq117 82.4 5e-11
>seq799
Length=2163
Score = 122 bits (134), Expect = 6e-23
Identities = 84/95 (88%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| | ||||| ||
Sbjct 1480 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAAGGAATCTTGT 1539
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||| ||||||||||||||||||||||
Sbjct 1540 TGATCCATTCATACGCGTCACTAATTAGATGACGA 1574
>seq353
Length=23439
Score = 122 bits (134), Expect = 6e-23
Identities = 84/95 (88%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| | ||||| ||
Sbjct 1430 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAAGGAATCTTGT 1489
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||| ||||||||||||||||||||||
Sbjct 1490 TGATCCATTCATACGCGTCACTAATTAGATGACGA 1524
Score = 105 bits (116), Expect = 4e-18
Identities = 69/76 (91%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 6551 CTCTCTCTTCAGAGTTCTTTTCAACTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCGT 6610
Query 20007 GGTAATATTTAGCCTT 20022
||||||||| |||
Sbjct 6611 ACGAATATTTAGTCTT 6626
>seq220
Length=74189
Score = 122 bits (134), Expect = 6e-23
Identities = 84/95 (88%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| | ||||| ||
Sbjct 69844 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAAGGAATCTTGT 69903
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||| ||||||||||||||||||||||
Sbjct 69904 TGATCCATTCATACGCGTCACTAATTAGATGACGA 69938
>seq830
Length=2015
Score = 116 bits (128), Expect = 2e-21
Identities = 82/94 (87%), Gaps = 5/94 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||| ||||||||||||||||||| | ||||| ||
Sbjct 1776 AAGCCCGTTCCCTTGGCTGTGGTTACGCTAGATAGTAGATAGGGACAGAAGGAATCTTGT 1717
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACG 25990
| |||| ||||| |||||||||||||||||||||
Sbjct 1716 TGATCCATTCATACGCGTCACTAATTAGATGACG 1683
>seq697
Length=3113
Score = 116 bits (128), Expect = 2e-21
Identities = 82/94 (87%), Gaps = 5/94 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||| ||||||||||||||||||| | ||||| ||
Sbjct 1338 AAGCCCGTTCCCTTGGCTGTGGTTACGCTAGATAGTAGATAGGGACAGAAGGAATCTTGT 1397
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACG 25990
| |||| ||||| |||||||||||||||||||||
Sbjct 1398 TGATCCATTCATACGCGTCACTAATTAGATGACG 1431
>seq398
Length=15062
Score = 116 bits (128), Expect = 2e-21
Identities = 82/94 (87%), Gaps = 5/94 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||| ||||||||||||||||||| | ||||| ||
Sbjct 7601 AAGCCCGTTCCCTTGGCTGTGGTTACGCTAGATAGTAGATAGGGACAGAAGGAATCTTGT 7542
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACG 25990
| |||| ||||| |||||||||||||||||||||
Sbjct 7541 TGATCCATTCATACGCGTCACTAATTAGATGACG 7508
>seq360
Length=20988
Score = 116 bits (128), Expect = 2e-21
Identities = 82/94 (87%), Gaps = 5/94 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||| ||||||||||||||||||| | ||||| ||
Sbjct 5200 AAGCCCGTTCCCTTGGCTGTGGTTACGCTAGATAGTAGATAGGGACAGAAGGAATCTTGT 5141
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACG 25990
| |||| ||||| |||||||||||||||||||||
Sbjct 5140 TGATCCATTCATACGCGTCACTAATTAGATGACG 5107
>seq332
Length=28044
Score = 91.5 bits (100), Expect = 1e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 38178 CCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGC 38237
|| ||||| || || || |||||||| | |||| |||||||||||| ||| ||
Sbjct 1114 CCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCTTGCTT 1173
Query 38238 TTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAG 38297
|| ||||| | | |||||| |||||||| | |||||| ||||| || |||||
Sbjct 1174 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 1233
Query 38298 GTTTTCACGAATATCTGCAT 38317
|||||||| |||||||||||
Sbjct 1234 GTTTTCACAAATATCTGCAT 1253
Score = 87.8 bits (96), Expect = 1e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234
|| || ||||| || || ||||||||||||| || | || ||||| ||| ||||||
Sbjct 1443 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 1502
Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294
||||||||| | || || ||| ||| ||||| | ||||| ||||| || |||
Sbjct 1503 CCCTTCACATTTTCAACTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCGGTC 1562
Query 38295 AAGGTTTTCACGAATATCTGCAT 38317
| ||||| || |||||||||||
Sbjct 1563 AGAGTTTTGACAAATATCTGCAT 1585
Score = 87.8 bits (96), Expect = 1e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234
|| || ||||| || || ||||||||||||| || | || ||||| ||| ||||||
Sbjct 17800 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 17859
Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294
||||||||| | || || ||| ||| ||||| | ||||| ||||| || |||
Sbjct 17860 CCCTTCACATTTTCAACTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCGGTC 17919
Query 38295 AAGGTTTTCACGAATATCTGCAT 38317
| ||||| || |||||||||||
Sbjct 17920 AGAGTTTTGACAAATATCTGCAT 17942
>seq326
Length=30629
Score = 91.5 bits (100), Expect = 1e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 38178 CCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGC 38237
|| ||||| || || || |||||||| | |||| |||||||||||| ||| ||
Sbjct 19437 CCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCTTGCTT 19496
Query 38238 TTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAG 38297
|| ||||| | | |||||| |||||||| | |||||| ||||| || |||||
Sbjct 19497 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 19556
Query 38298 GTTTTCACGAATATCTGCAT 38317
|||||||| |||||||||||
Sbjct 19557 GTTTTCACAAATATCTGCAT 19576
Score = 84.2 bits (92), Expect = 1e-11
Identities = 106/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234
|| || ||||| || || ||||||||||||| || | || ||||| ||| ||||||
Sbjct 19766 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 19825
Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294
||||||||| | | || || ||| ||||| | ||||| ||||| || |||
Sbjct 19826 CCCTTCACATTTTCAATTGTGTCAGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 19885
Query 38295 AAGGTTTTCACGAATATCTGCATGTT 38320
| |||||||| ||||||||||| ||
Sbjct 19886 AGAGTTTTCACAAATATCTGCATTTT 19911
Score = 82.4 bits (90), Expect = 5e-11
Identities = 82/105 (78%), Gaps = 1/105 (1%)
Strand=Plus/Plus
Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145
|||| ||||| | || ||| | ||||||||| |||||||| |||||||| ||||||||||
Sbjct 17532 CATT-CCACCGCGCAGACGAAGCACCAAATGCAGAGTGCTTTCCTTTTGGATATTGTAAT 17590
Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTA 38190
||||||| | |||| || ||||| ||||| ||| ||||
Sbjct 17591 CAGACAATGTTCTACCGTCTTCCAATTGCTTTCCTAAAAACATTA 17635
>seq117
Length=123509
Score = 82.4 bits (90), Expect = 5e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234
|| || ||||| |||| | ||| ||||| | || | |||||| || ||| ||||||
Sbjct 10269 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 10328
Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294
|| ||||| | || || ||| ||||||||||| ||| |||||||| || ||
Sbjct 10329 CTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 10388
Query 38295 AAGGTTTTCACGAATATCTGCAT 38317
| || |||||||||||||||||
Sbjct 10389 AGTGTCTTCACGAATATCTGCAT 10411
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334922907012281
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |