Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24] 5,951 sequences; 50,853,738 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq146 120 4e-22 seq263 82.4 1e-10 >seq146 Length=107015 Score = 120 bits (132), Expect = 4e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 63746 GAAATAATAGGAAAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATC 63805 ||||| || || ||||||| | || ||||||| | | | ||||||| || ||| Sbjct 9796 GAAATCATCGGCGAATGTTTGTTCGTGTTGGGATTGATCCACTGGTATAAATCATCAATC 9737 Query 63806 ACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCT 63865 || || || || | |||||| ||||||||||| | ||| |||||||| | ||||| Sbjct 9736 ACATCGCTGAAAACTTTTTTCGTTTCTTTGTGCAAATTGCTGACGGCTATGCGTGCGGCC 9677 Query 63866 AGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTG 63925 | | ||||| |||||||||| |||||| ||||| | ||||| || |||| | || Sbjct 9676 AATGTCGCATAGTCCGGATGTTTTGTAGTCATTGTGGCGGAAATTTCAGCGGCCAAATTG 9617 Query 63926 TCCAATTCTACCGTTGTTACACCATTATA 63954 |||||||| || ||||| ||||| | ||| Sbjct 9616 TCCAATTCGACAGTTGTCACACCTTGATA 9588 Score = 111 bits (122), Expect = 2e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 61841 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 61900 ||||||| ||||||||||| | | ||| || || || | | ||||||||| || Sbjct 12392 TTGTCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCA 12333 Query 61901 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 61960 ||||| ||||| |||| ||||| |||||||| || | ||| | |||| |||| Sbjct 12332 GTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGC 12273 Query 61961 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62020 || ||||| || ||||||| || || ||| || ||||| |||||||| || || ||| Sbjct 12272 TCGGCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCAGCGGCC 12213 Query 62021 ATTTTTATAATCGTCTTTTGTGGAATTTCCCAAA 62054 || | ||| | ||||| | ||||||||||| Sbjct 12212 ATGTCTATGACGCATTTTTGGGAAATTTCCCAAA 12179 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 62984 TACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACAC 63043 || ||| ||| ||||| || ||||| | || ||| |||||||||||||| || ||| Sbjct 10901 TATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCATGAGGGCAC 10842 Query 63044 ATCAACGACCACTCTCCGTCATCCTTCACT-CGTTTCATAAAGAGATCAGGAATCCAAAG 63102 |||| ||||| |||||||| ||||| | || ||||| || |||||||| ||||| || Sbjct 10841 ATCAGTGACCAATCTCCGTC-GGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAGAG 10783 Query 63103 AGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 63162 || ||| | ||||| || || | ||| ||| ||||| |||||||| || || Sbjct 10782 GGCATAAAACAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAG 10723 Query 63163 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 63198 || | | || || | ||||| |||||||| || Sbjct 10722 AAAATCAAATATGTCTGCGTGCCAAGGTTCCAAATA 10687 Score = 100 bits (110), Expect = 4e-16 Identities = 174/248 (70%), Gaps = 9/248 (4%) Strand=Plus/Minus Query 62398 TTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTC 62457 ||| |||||||| ||||| || || ||| ||| || |||||||| || || | Sbjct 11691 TTGAAGAATACCCTTACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCAAACTGTTT 11632 Query 62458 AGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATT 62517 || | || ||||| ||||| ||| | ||||| |||||||| || || |||||||| Sbjct 11631 TGCCAAATCGCAACTGCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTTATT 11572 Query 62518 TAG--ATCTTGCG-CTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGC 62574 | |||| || |||| || | ||||| ||||| | | |||||| || || || Sbjct 11571 CAACAATCTAGCTTCTTC--GGAT-TCAAACGGATATCGCATCAAAATAAAAGCATCCGC 11515 Query 62575 TAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGG 62634 |||||||| ||||||||||| || |||| ||| | || ||||| |||| || | | Sbjct 11514 CAATCCTTGTACACCAATACCAATTGGTCGATGACGTTTGTTAGACTTTTCTGCCT---G 11458 Query 62635 AATAGGAT 62642 || ||||| Sbjct 11457 AAAAGGAT 11450 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 62191 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62250 ||||||||||||||| || | || | ||||| || | ||| || |||| ||| || Sbjct 11970 TACTTGAAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTACGCTTCTAC 11911 Query 62251 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62310 || ||||| || ||||||||||| || || |||||||||||||| || |||| ||| || Sbjct 11910 TGATTCATTGTTGCCCAAAATTTGCGCTGTCGATGCAGTCGGCATTGGAGCCAACAACAA 11851 Query 62311 ACTATTTCTAAGACCGTA 62328 |||||| ||||| || Sbjct 11850 CGAATTTCTCAGACCATA 11833 >seq263 Length=55217 Score = 82.4 bits (90), Expect = 1e-10 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 32357 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 32416 ||| |||||| ||| |||||||| || || |||||||||||||| || ||||||||||| Sbjct 24288 CATCACTCCCGCTTTCTGGTATTCGCCGACGCGTTTTTCGAAAAAGTTCGTTTTACCTTC 24229 Query 32417 TAATGATATATTTTCCATGAAATCGAATGGATT 32449 | || || |||||| || ||||| ||||| Sbjct 24228 CAGCGAAATCAATTCCATAAAGTCGAACGGATT 24196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633584865699600