Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24] 5,951 sequences; 50,853,738 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq332 87.8 2e-12 seq326 87.8 2e-12 seq6 84.2 2e-11 >seq332 Length=28044 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/144 (75%), Gaps = 8/144 (6%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| || || ||||| || ||| | || ||| | ||||| ||| |||| Sbjct 1253 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 1194 Query 25059 GACACTATCGAGTCACTG----AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || || || | || |||||| | ||| ||||||||||| || ||||| || Sbjct 1193 GATACAATTGAA--AATGTAAAAAGCAAGAT-TCAA-GACAAAGAAGGCATCCCACCAGA 1138 Query 25115 CCAACAGCGGATTATTTTTGCCGG 25138 ||||||||| |||||||||| || Sbjct 1137 TCAACAGCGGCTTATTTTTGCTGG 1114 >seq326 Length=30629 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/144 (75%), Gaps = 8/144 (6%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| || || ||||| || ||| | || ||| | ||||| ||| |||| Sbjct 19576 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 19517 Query 25059 GACACTATCGAGTCACTG----AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || || || | || |||||| | ||| ||||||||||| || ||||| || Sbjct 19516 GATACAATTGAA--AATGTAAAAAGCAAGAT-TCAA-GACAAAGAAGGCATCCCACCAGA 19461 Query 25115 CCAACAGCGGATTATTTTTGCCGG 25138 ||||||||| |||||||||| || Sbjct 19460 TCAACAGCGGCTTATTTTTGCTGG 19437 >seq6 Length=459386 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 25100 AGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCG 25159 ||||||||||||||| || ||||| | |||||||| || ||||| | ||||||| || Sbjct 122501 AGGGATTCCACCTGATCAGCAGCGACTGATTTTTGCTGGAAAACAGCTTGAAGATGGACG 122560 Query 25160 CACTGTGGGCGATTACAATATTCAAAAAG 25188 ||| || ||||||||||||||| |||| Sbjct 122561 TACTTTGTCCGATTACAATATTCAGAAAG 122589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433296571668065