Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24]
5,951 sequences; 50,853,738 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq332 87.8 2e-12
seq326 87.8 2e-12
seq6 84.2 2e-11
>seq332
Length=28044
Score = 87.8 bits (96), Expect = 2e-12
Identities = 108/144 (75%), Gaps = 8/144 (6%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| |||||||| || || ||||| || ||| | || ||| | ||||| ||| ||||
Sbjct 1253 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 1194
Query 25059 GACACTATCGAGTCACTG----AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
|| || || || | || |||||| | ||| ||||||||||| || ||||| ||
Sbjct 1193 GATACAATTGAA--AATGTAAAAAGCAAGAT-TCAA-GACAAAGAAGGCATCCCACCAGA 1138
Query 25115 CCAACAGCGGATTATTTTTGCCGG 25138
||||||||| |||||||||| ||
Sbjct 1137 TCAACAGCGGCTTATTTTTGCTGG 1114
>seq326
Length=30629
Score = 87.8 bits (96), Expect = 2e-12
Identities = 108/144 (75%), Gaps = 8/144 (6%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| |||||||| || || ||||| || ||| | || ||| | ||||| ||| ||||
Sbjct 19576 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 19517
Query 25059 GACACTATCGAGTCACTG----AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
|| || || || | || |||||| | ||| ||||||||||| || ||||| ||
Sbjct 19516 GATACAATTGAA--AATGTAAAAAGCAAGAT-TCAA-GACAAAGAAGGCATCCCACCAGA 19461
Query 25115 CCAACAGCGGATTATTTTTGCCGG 25138
||||||||| |||||||||| ||
Sbjct 19460 TCAACAGCGGCTTATTTTTGCTGG 19437
>seq6
Length=459386
Score = 84.2 bits (92), Expect = 2e-11
Identities = 72/89 (81%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 25100 AGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCG 25159
||||||||||||||| || ||||| | |||||||| || ||||| | ||||||| ||
Sbjct 122501 AGGGATTCCACCTGATCAGCAGCGACTGATTTTTGCTGGAAAACAGCTTGAAGATGGACG 122560
Query 25160 CACTGTGGGCGATTACAATATTCAAAAAG 25188
||| || ||||||||||||||| ||||
Sbjct 122561 TACTTTGTCCGATTACAATATTCAGAAAG 122589
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433296571668065
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |