Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24]
5,951 sequences; 50,853,738 total letters
Query= NC_008520.2
Length=132239
Score E
Sequences producing significant alignments: (Bits) Value
seq332 82.4 6e-11
>seq332
Length=28044
Score = 82.4 bits (90), Expect = 6e-11
Identities = 105/145 (72%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 111185 AAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCA 111244
||||||| || ||||||||||| ||||||| ||||||||||| ||||| |||||||
Sbjct 1587 AAATGCAGATATTTGTCAAAACTCTGACCGGGAAAACCATTACTCTGGAAGTGGAACCCT 1528
Query 111245 GCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATC 111304
|| | |||| | || || |||||| || ||||| || |||| |||||
Sbjct 1527 CAGACACAGTTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATC 1468
Query 111305 AACAAAGGCTTATTTATGCGGGCAA 111329
||||| | || |||| ||| || ||
Sbjct 1467 AACAACGTCTGATTTTTGCTGGTAA 1443
Score = 82.4 bits (90), Expect = 6e-11
Identities = 105/145 (72%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 111185 AAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCA 111244
||||||| || ||||||||||| ||||||| ||||||||||| ||||| |||||||
Sbjct 17944 AAATGCAGATATTTGTCAAAACTCTGACCGGGAAAACCATTACTCTGGAAGTGGAACCCT 17885
Query 111245 GCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATC 111304
|| | |||| | || || |||||| || ||||| || |||| |||||
Sbjct 17884 CAGACACAGTTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATC 17825
Query 111305 AACAAAGGCTTATTTATGCGGGCAA 111329
||||| | || |||| ||| || ||
Sbjct 17824 AACAACGTCTGATTTTTGCTGGTAA 17800
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 423009317834200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |