Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24] 5,951 sequences; 50,853,738 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq332 82.4 6e-11 >seq332 Length=28044 Score = 82.4 bits (90), Expect = 6e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 111185 AAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCA 111244 ||||||| || ||||||||||| ||||||| ||||||||||| ||||| ||||||| Sbjct 1587 AAATGCAGATATTTGTCAAAACTCTGACCGGGAAAACCATTACTCTGGAAGTGGAACCCT 1528 Query 111245 GCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATC 111304 || | |||| | || || |||||| || ||||| || |||| ||||| Sbjct 1527 CAGACACAGTTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATC 1468 Query 111305 AACAAAGGCTTATTTATGCGGGCAA 111329 ||||| | || |||| ||| || || Sbjct 1467 AACAACGTCTGATTTTTGCTGGTAA 1443 Score = 82.4 bits (90), Expect = 6e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 111185 AAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCA 111244 ||||||| || ||||||||||| ||||||| ||||||||||| ||||| ||||||| Sbjct 17944 AAATGCAGATATTTGTCAAAACTCTGACCGGGAAAACCATTACTCTGGAAGTGGAACCCT 17885 Query 111245 GCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATC 111304 || | |||| | || || |||||| || ||||| || |||| ||||| Sbjct 17884 CAGACACAGTTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATC 17825 Query 111305 AACAAAGGCTTATTTATGCGGGCAA 111329 ||||| | || |||| ||| || || Sbjct 17824 AACAACGTCTGATTTTTGCTGGTAA 17800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423009317834200