Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24]
5,951 sequences; 50,853,738 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq326 105 1e-17
seq117 105 1e-17
seq332 104 4e-17
seq2524 100 5e-16
seq1863 91.5 3e-13
>seq326
Length=30629
Score = 105 bits (116), Expect = 1e-17
Identities = 110/142 (77%), Gaps = 2/142 (1%)
Strand=Plus/Plus
Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381
|| || || || || | ||| || || |||||||| ||||| || |||||||| ||||||
Sbjct 17678 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAAT-TTTGCC 17736
Query 68382 TTG-ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440
|| || ||| || || || | || |||||||||||||||||| ||||| || || ||
Sbjct 17737 TTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAG 17796
Query 68441 GGTCTTGACGAATATCTGCATT 68462
||||| ||||| || ||||||
Sbjct 17797 AGTCTTAACGAAAATTTGCATT 17818
Score = 105 bits (116), Expect = 1e-17
Identities = 110/142 (77%), Gaps = 2/142 (1%)
Strand=Plus/Plus
Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381
|| || || || || | ||| || || |||||||| ||||| || |||||||| ||||||
Sbjct 18523 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAAT-TTTGCC 18581
Query 68382 TTG-ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440
|| || ||| || || || | || |||||||||||| ||||||||||| || |||||
Sbjct 18582 TTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAATGTGATGGTTTTGCCGGTGAG 18641
Query 68441 GGTCTTGACGAATATCTGCATT 68462
||||| || || || ||||||
Sbjct 18642 AGTCTTAACAAAAATTTGCATT 18663
Score = 100 bits (110), Expect = 5e-16
Identities = 112/150 (75%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372
||||||| || || || || | | |||||| || |||||||| |||||||| || ||
Sbjct 17949 AACTGCTCACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGT 18008
Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432
|| || | || || || || || || | || |||||||||||| || || ||||||
Sbjct 18009 ATTTTCCCTTTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 18068
Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATT 68462
|| || |||||||| ||||| || ||||||
Sbjct 18069 CCAGTAAGGGTCTTAACGAAAATTTGCATT 18098
Score = 100 bits (110), Expect = 5e-16
Identities = 109/145 (75%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377
||| || || || || | | |||||| || |||||||| |||||||| || || || ||
Sbjct 18236 CTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTT 18295
Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437
| || || ||| || || || | || |||||||||||||||||| ||||| || ||
Sbjct 18296 CCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGT 18355
Query 68438 GAGGGTCTTGACGAATATCTGCATT 68462
|| ||||| || || |||||||||
Sbjct 18356 AAGAGTCTTAACAAAAATCTGCATT 18380
Score = 100 bits (110), Expect = 5e-16
Identities = 112/150 (75%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372
||||||| || || || || | | |||||| || |||||||| |||||||| || ||
Sbjct 18794 AACTGCTCACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGT 18853
Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432
|| || | || || || || || || | || |||||||||||| || || ||||||
Sbjct 18854 ATTTTCCCTTTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 18913
Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATT 68462
|| || |||||||| ||||| || ||||||
Sbjct 18914 CCAGTAAGGGTCTTAACGAAAATTTGCATT 18943
Score = 96.9 bits (106), Expect = 6e-15
Identities = 95/123 (77%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 68340 TGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTG 68399
||||| || || ||||| || ||||| ||||||||||| | || || ||| | ||
Sbjct 17413 TGTTGATCTGGAGGAATTCCCTCCTTATCTTGAATCTTCCCTTTCACATTCTCAACAGTA 17472
Query 68400 TCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGC 68459
|| | || ||| |||||||| ||||||||||| || || |||||||| || || ||||||
Sbjct 17473 TCAGATGGTTCCACTTCCAACGTGATGGTTTTCCCAGTTAGGGTCTTAACAAAAATCTGC 17532
Query 68460 ATT 68462
|||
Sbjct 17533 ATT 17535
Score = 91.5 bits (100), Expect = 3e-13
Identities = 107/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377
||| || || || || || | |||||| ||||||||||| || || || || ||||| ||
Sbjct 19765 CTTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTT 19824
Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437
|||| || || || ||||| | | ||| ||||||| || |||||||| || ||
Sbjct 19825 ACCCTTCACATTTTCAATTGTGTCAGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGT 19884
Query 68438 GAGGGTCTTGACGAATATCTGCATT 68462
|| || || || ||||||||||||
Sbjct 19885 CAGAGTTTTCACAAATATCTGCATT 19909
>seq117
Length=123509
Score = 105 bits (116), Expect = 1e-17
Identities = 111/146 (76%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378
|| || || || || | |||||| || || || |||||||||||||| || ||||| ||
Sbjct 10269 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 10328
Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438
|| || ||||||||||||| || ||| ||||| | || || |||||||| ||
Sbjct 10329 CTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 10388
Query 68439 AGGGTCTTGACGAATATCTGCATTAT 68464
|| ||||| |||||||||||||| ||
Sbjct 10389 AGTGTCTTCACGAATATCTGCATAAT 10414
Score = 96.9 bits (106), Expect = 6e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378
|| || || ||||| | || ||| || || ||||||||||||||||| |||||||| ||
Sbjct 9301 TTACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTA 9360
Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438
|| || || || || |||| || ||||||||||| ||||| |||||||| ||
Sbjct 9361 CTTTTCACATTTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 9420
Query 68439 AGGGTCTTGACGAATATCTGCAT 68461
| || || || || ||||||||
Sbjct 9421 AATGTTTTCACAAAAATCTGCAT 9443
Score = 95.1 bits (104), Expect = 2e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381
|| || ||||| | || ||| || || ||||||||||||||||| |||||||| ||
Sbjct 9590 CCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTACTT 9649
Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441
|| || || || || |||| || ||||||||||| ||||| |||||||| || |
Sbjct 9650 TTCACATTTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAAT 9709
Query 68442 GTCTTGACGAATATCTGCAT 68461
|| || || || ||||||||
Sbjct 9710 GTTTTCACAAAAATCTGCAT 9729
Score = 93.3 bits (102), Expect = 8e-14
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381
|| || ||||| | || ||| || || ||||||||||||||||| |||||||| ||
Sbjct 8730 CCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTACTT 8789
Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441
|| || || || || || | || ||||||||||| ||||| |||||||| || |
Sbjct 8790 TTTACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAAT 8849
Query 68442 GTCTTGACGAATATCTGCATT 68462
|| || || || |||||||||
Sbjct 8850 GTTTTCACAAAAATCTGCATT 8870
Score = 93.3 bits (102), Expect = 8e-14
Identities = 107/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378
|| || || ||||| | || ||| || || ||||||||||||||||| |||||||| ||
Sbjct 9014 TTACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTA 9073
Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438
|| || || || || || | || ||||||||||| ||||| |||||||| ||
Sbjct 9074 CTTTTTACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 9133
Query 68439 AGGGTCTTGACGAATATCTGCATT 68462
| || || || || |||||||||
Sbjct 9134 AATGTTTTCACAAAAATCTGCATT 9157
>seq332
Length=28044
Score = 104 bits (114), Expect = 4e-17
Identities = 113/150 (75%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372
|||||||| || || || || | | |||||| || |||||||| |||||||| || ||
Sbjct 27490 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGT 27549
Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432
|| || | || || ||| || || || | || |||||||||||||||||| |||||
Sbjct 27550 ATTTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTG 27609
Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATT 68462
|| || || ||||| || || || ||||||
Sbjct 27610 CCGGTAAGAGTCTTAACAAAAATTTGCATT 27639
Score = 100 bits (110), Expect = 5e-16
Identities = 109/142 (77%), Gaps = 2/142 (1%)
Strand=Plus/Plus
Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381
|| || || || || | ||| || || |||||||| ||||| || |||||||| ||||||
Sbjct 480 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAAT-TTTGCC 538
Query 68382 TTG-ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440
|| || ||| || || || | || |||||||||||||||||| ||||| || || ||
Sbjct 539 TTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAG 598
Query 68441 GGTCTTGACGAATATCTGCATT 68462
||||| || || || ||||||
Sbjct 599 AGTCTTAACAAAAATTTGCATT 620
Score = 95.1 bits (104), Expect = 2e-14
Identities = 108/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377
||| || || || || || | |||||| ||||||||||| || || || || ||||| ||
Sbjct 1442 CTTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTT 1501
Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437
|||| || || | ||||||| | ||| ||||||| || |||||||| || ||
Sbjct 1502 ACCCTTCACATTTTCAACTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCGGT 1561
Query 68438 GAGGGTCTTGACGAATATCTGCATT 68462
|| || ||||| ||||||||||||
Sbjct 1562 CAGAGTTTTGACAAATATCTGCATT 1586
Score = 95.1 bits (104), Expect = 2e-14
Identities = 108/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377
||| || || || || || | |||||| ||||||||||| || || || || ||||| ||
Sbjct 17799 CTTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTT 17858
Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437
|||| || || | ||||||| | ||| ||||||| || |||||||| || ||
Sbjct 17859 ACCCTTCACATTTTCAACTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCGGT 17918
Query 68438 GAGGGTCTTGACGAATATCTGCATT 68462
|| || ||||| ||||||||||||
Sbjct 17919 CAGAGTTTTGACAAATATCTGCATT 17943
Score = 95.1 bits (104), Expect = 2e-14
Identities = 111/150 (74%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372
|||||||| || || || || | | |||||| || || ||||| || || || |||||
Sbjct 27769 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGT 27828
Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432
|| ||| | || || || || || || | || |||||||||||| |||||||||||
Sbjct 27829 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAACGTGATGGTTTTC 27888
Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATT 68462
|| || || ||||| || || || ||||||
Sbjct 27889 CCAGTAAGAGTCTTAACAAAAATTTGCATT 27918
Score = 91.5 bits (100), Expect = 3e-13
Identities = 107/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377
||| || || || || | | ||| || || |||||||| |||||||| || || || ||
Sbjct 26653 CTTACCAGCAAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTT 26712
Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437
| || || ||| || || || | || |||||||||||||||||| ||||| || ||
Sbjct 26713 CCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGT 26772
Query 68438 GAGGGTCTTGACGAATATCTGCATT 68462
|| ||||| || || || ||||||
Sbjct 26773 AAGAGTCTTAACAAAAATTTGCATT 26797
Score = 91.5 bits (100), Expect = 3e-13
Identities = 94/123 (76%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 68340 TGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTG 68399
||||| || |||||||| |||||||| || || || || | || || ||| || ||
Sbjct 27238 TGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCTTTTACATTCTCTATTGTA 27297
Query 68400 TCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGC 68459
|| | || |||||||||||||||||| ||||| || || || ||||| || || || |||
Sbjct 27298 TCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGAGTCTTAACAAAAATTTGC 27357
Query 68460 ATT 68462
|||
Sbjct 27358 ATT 27360
>seq2524
Length=468
Score = 100 bits (110), Expect = 5e-16
Identities = 109/142 (77%), Gaps = 2/142 (1%)
Strand=Plus/Plus
Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381
|| || || || || | ||| || || |||||||| ||||| || |||||||| ||||||
Sbjct 233 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAAT-TTTGCC 291
Query 68382 TTG-ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440
|| || ||| || || || | || |||||||||||||||||| ||||| || || ||
Sbjct 292 TTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAG 351
Query 68441 GGTCTTGACGAATATCTGCATT 68462
||||| || || || ||||||
Sbjct 352 AGTCTTAACAAAAATTTGCATT 373
>seq1863
Length=625
Score = 91.5 bits (100), Expect = 3e-13
Identities = 107/142 (75%), Gaps = 2/142 (1%)
Strand=Plus/Minus
Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381
|| || || || || | ||| || || |||||||| ||||| || |||||||| ||||||
Sbjct 146 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAAT-TTTGCC 88
Query 68382 TTG-ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440
|| || || || || || | || ||||||||||||||||| ||||| || || ||
Sbjct 87 TTTTACATTTTCTATTGTATCAGATGGCTCTACTTCCAAGGTGATCGTTTTGCCGGTAAG 28
Query 68441 GGTCTTGACGAATATCTGCATT 68462
||||| || || || ||||||
Sbjct 27 AGTCTTAACAAAAATTTGCATT 6
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921553842813720
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