Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24] 5,951 sequences; 50,853,738 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq326 105 1e-17 seq117 105 1e-17 seq332 104 4e-17 seq2524 100 5e-16 seq1863 91.5 3e-13 >seq326 Length=30629 Score = 105 bits (116), Expect = 1e-17 Identities = 110/142 (77%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || || || || || | ||| || || |||||||| ||||| || |||||||| |||||| Sbjct 17678 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAAT-TTTGCC 17736 Query 68382 TTG-ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440 || || ||| || || || | || |||||||||||||||||| ||||| || || || Sbjct 17737 TTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAG 17796 Query 68441 GGTCTTGACGAATATCTGCATT 68462 ||||| ||||| || |||||| Sbjct 17797 AGTCTTAACGAAAATTTGCATT 17818 Score = 105 bits (116), Expect = 1e-17 Identities = 110/142 (77%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || || || || || | ||| || || |||||||| ||||| || |||||||| |||||| Sbjct 18523 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAAT-TTTGCC 18581 Query 68382 TTG-ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440 || || ||| || || || | || |||||||||||| ||||||||||| || ||||| Sbjct 18582 TTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAATGTGATGGTTTTGCCGGTGAG 18641 Query 68441 GGTCTTGACGAATATCTGCATT 68462 ||||| || || || |||||| Sbjct 18642 AGTCTTAACAAAAATTTGCATT 18663 Score = 100 bits (110), Expect = 5e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 ||||||| || || || || | | |||||| || |||||||| |||||||| || || Sbjct 17949 AACTGCTCACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGT 18008 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 || || | || || || || || || | || |||||||||||| || || |||||| Sbjct 18009 ATTTTCCCTTTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 18068 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || || |||||||| ||||| || |||||| Sbjct 18069 CCAGTAAGGGTCTTAACGAAAATTTGCATT 18098 Score = 100 bits (110), Expect = 5e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| || || || || | | |||||| || |||||||| |||||||| || || || || Sbjct 18236 CTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTT 18295 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 | || || ||| || || || | || |||||||||||||||||| ||||| || || Sbjct 18296 CCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGT 18355 Query 68438 GAGGGTCTTGACGAATATCTGCATT 68462 || ||||| || || ||||||||| Sbjct 18356 AAGAGTCTTAACAAAAATCTGCATT 18380 Score = 100 bits (110), Expect = 5e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 ||||||| || || || || | | |||||| || |||||||| |||||||| || || Sbjct 18794 AACTGCTCACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGT 18853 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 || || | || || || || || || | || |||||||||||| || || |||||| Sbjct 18854 ATTTTCCCTTTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 18913 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || || |||||||| ||||| || |||||| Sbjct 18914 CCAGTAAGGGTCTTAACGAAAATTTGCATT 18943 Score = 96.9 bits (106), Expect = 6e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 68340 TGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTG 68399 ||||| || || ||||| || ||||| ||||||||||| | || || ||| | || Sbjct 17413 TGTTGATCTGGAGGAATTCCCTCCTTATCTTGAATCTTCCCTTTCACATTCTCAACAGTA 17472 Query 68400 TCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGC 68459 || | || ||| |||||||| ||||||||||| || || |||||||| || || |||||| Sbjct 17473 TCAGATGGTTCCACTTCCAACGTGATGGTTTTCCCAGTTAGGGTCTTAACAAAAATCTGC 17532 Query 68460 ATT 68462 ||| Sbjct 17533 ATT 17535 Score = 91.5 bits (100), Expect = 3e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| || || || || || | |||||| ||||||||||| || || || || ||||| || Sbjct 19765 CTTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTT 19824 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 |||| || || || ||||| | | ||| ||||||| || |||||||| || || Sbjct 19825 ACCCTTCACATTTTCAATTGTGTCAGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGT 19884 Query 68438 GAGGGTCTTGACGAATATCTGCATT 68462 || || || || |||||||||||| Sbjct 19885 CAGAGTTTTCACAAATATCTGCATT 19909 >seq117 Length=123509 Score = 105 bits (116), Expect = 1e-17 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || || || || | |||||| || || || |||||||||||||| || ||||| || Sbjct 10269 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 10328 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 || || ||||||||||||| || ||| ||||| | || || |||||||| || Sbjct 10329 CTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 10388 Query 68439 AGGGTCTTGACGAATATCTGCATTAT 68464 || ||||| |||||||||||||| || Sbjct 10389 AGTGTCTTCACGAATATCTGCATAAT 10414 Score = 96.9 bits (106), Expect = 6e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || || ||||| | || ||| || || ||||||||||||||||| |||||||| || Sbjct 9301 TTACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTA 9360 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 || || || || || |||| || ||||||||||| ||||| |||||||| || Sbjct 9361 CTTTTCACATTTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 9420 Query 68439 AGGGTCTTGACGAATATCTGCAT 68461 | || || || || |||||||| Sbjct 9421 AATGTTTTCACAAAAATCTGCAT 9443 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || || ||||| | || ||| || || ||||||||||||||||| |||||||| || Sbjct 9590 CCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTACTT 9649 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || || || || || |||| || ||||||||||| ||||| |||||||| || | Sbjct 9650 TTCACATTTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAAT 9709 Query 68442 GTCTTGACGAATATCTGCAT 68461 || || || || |||||||| Sbjct 9710 GTTTTCACAAAAATCTGCAT 9729 Score = 93.3 bits (102), Expect = 8e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || || ||||| | || ||| || || ||||||||||||||||| |||||||| || Sbjct 8730 CCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTACTT 8789 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || || || || || || | || ||||||||||| ||||| |||||||| || | Sbjct 8790 TTTACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAAT 8849 Query 68442 GTCTTGACGAATATCTGCATT 68462 || || || || ||||||||| Sbjct 8850 GTTTTCACAAAAATCTGCATT 8870 Score = 93.3 bits (102), Expect = 8e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || || ||||| | || ||| || || ||||||||||||||||| |||||||| || Sbjct 9014 TTACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTA 9073 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 || || || || || || | || ||||||||||| ||||| |||||||| || Sbjct 9074 CTTTTTACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 9133 Query 68439 AGGGTCTTGACGAATATCTGCATT 68462 | || || || || ||||||||| Sbjct 9134 AATGTTTTCACAAAAATCTGCATT 9157 >seq332 Length=28044 Score = 104 bits (114), Expect = 4e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 |||||||| || || || || | | |||||| || |||||||| |||||||| || || Sbjct 27490 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGT 27549 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 || || | || || ||| || || || | || |||||||||||||||||| ||||| Sbjct 27550 ATTTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTG 27609 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || || || ||||| || || || |||||| Sbjct 27610 CCGGTAAGAGTCTTAACAAAAATTTGCATT 27639 Score = 100 bits (110), Expect = 5e-16 Identities = 109/142 (77%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || || || || || | ||| || || |||||||| ||||| || |||||||| |||||| Sbjct 480 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAAT-TTTGCC 538 Query 68382 TTG-ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440 || || ||| || || || | || |||||||||||||||||| ||||| || || || Sbjct 539 TTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAG 598 Query 68441 GGTCTTGACGAATATCTGCATT 68462 ||||| || || || |||||| Sbjct 599 AGTCTTAACAAAAATTTGCATT 620 Score = 95.1 bits (104), Expect = 2e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| || || || || || | |||||| ||||||||||| || || || || ||||| || Sbjct 1442 CTTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTT 1501 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 |||| || || | ||||||| | ||| ||||||| || |||||||| || || Sbjct 1502 ACCCTTCACATTTTCAACTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCGGT 1561 Query 68438 GAGGGTCTTGACGAATATCTGCATT 68462 || || ||||| |||||||||||| Sbjct 1562 CAGAGTTTTGACAAATATCTGCATT 1586 Score = 95.1 bits (104), Expect = 2e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| || || || || || | |||||| ||||||||||| || || || || ||||| || Sbjct 17799 CTTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTT 17858 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 |||| || || | ||||||| | ||| ||||||| || |||||||| || || Sbjct 17859 ACCCTTCACATTTTCAACTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCGGT 17918 Query 68438 GAGGGTCTTGACGAATATCTGCATT 68462 || || ||||| |||||||||||| Sbjct 17919 CAGAGTTTTGACAAATATCTGCATT 17943 Score = 95.1 bits (104), Expect = 2e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 |||||||| || || || || | | |||||| || || ||||| || || || ||||| Sbjct 27769 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGT 27828 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 || ||| | || || || || || || | || |||||||||||| ||||||||||| Sbjct 27829 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAACGTGATGGTTTTC 27888 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || || || ||||| || || || |||||| Sbjct 27889 CCAGTAAGAGTCTTAACAAAAATTTGCATT 27918 Score = 91.5 bits (100), Expect = 3e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| || || || || | | ||| || || |||||||| |||||||| || || || || Sbjct 26653 CTTACCAGCAAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTT 26712 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 | || || ||| || || || | || |||||||||||||||||| ||||| || || Sbjct 26713 CCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGT 26772 Query 68438 GAGGGTCTTGACGAATATCTGCATT 68462 || ||||| || || || |||||| Sbjct 26773 AAGAGTCTTAACAAAAATTTGCATT 26797 Score = 91.5 bits (100), Expect = 3e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 68340 TGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTG 68399 ||||| || |||||||| |||||||| || || || || | || || ||| || || Sbjct 27238 TGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCTTTTACATTCTCTATTGTA 27297 Query 68400 TCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGC 68459 || | || |||||||||||||||||| ||||| || || || ||||| || || || ||| Sbjct 27298 TCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGAGTCTTAACAAAAATTTGC 27357 Query 68460 ATT 68462 ||| Sbjct 27358 ATT 27360 >seq2524 Length=468 Score = 100 bits (110), Expect = 5e-16 Identities = 109/142 (77%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || || || || || | ||| || || |||||||| ||||| || |||||||| |||||| Sbjct 233 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAAT-TTTGCC 291 Query 68382 TTG-ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440 || || ||| || || || | || |||||||||||||||||| ||||| || || || Sbjct 292 TTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAG 351 Query 68441 GGTCTTGACGAATATCTGCATT 68462 ||||| || || || |||||| Sbjct 352 AGTCTTAACAAAAATTTGCATT 373 >seq1863 Length=625 Score = 91.5 bits (100), Expect = 3e-13 Identities = 107/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || || || || || | ||| || || |||||||| ||||| || |||||||| |||||| Sbjct 146 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAAT-TTTGCC 88 Query 68382 TTG-ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440 || || || || || || | || ||||||||||||||||| ||||| || || || Sbjct 87 TTTTACATTTTCTATTGTATCAGATGGCTCTACTTCCAAGGTGATCGTTTTGCCGGTAAG 28 Query 68441 GGTCTTGACGAATATCTGCATT 68462 ||||| || || || |||||| Sbjct 27 AGTCTTAACAAAAATTTGCATT 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921553842813720