Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24] 5,951 sequences; 50,853,738 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq332 102 2e-16 seq326 102 2e-16 seq2524 96.9 8e-15 seq1863 96.9 8e-15 seq123 91.5 3e-13 >seq332 Length=28044 Score = 102 bits (112), Expect = 2e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || || || |||||||| |||||| ||| ||||| ||||||||||| ||||| Sbjct 1443 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 1502 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 | ||||| ||||| | | || | ||| ||||| || || || || ||||||||| Sbjct 1503 CCCTTCACATTTTCAACTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCGGTC 1562 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 ||||| ||||| |||||||||||| Sbjct 1563 AGAGTTTTGACAAATATCTGCATT 1586 Score = 102 bits (112), Expect = 2e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || || || |||||||| |||||| ||| ||||| ||||||||||| ||||| Sbjct 17800 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 17859 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 | ||||| ||||| | | || | ||| ||||| || || || || ||||||||| Sbjct 17860 CCCTTCACATTTTCAACTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCGGTC 17919 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 ||||| ||||| |||||||||||| Sbjct 17920 AGAGTTTTGACAAATATCTGCATT 17943 Score = 96.9 bits (106), Expect = 8e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || || |||||||| || ||| ||| |||||||||||||| || ||||| || Sbjct 197 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 256 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || || || ||||| | ||| | ||||||||| | |||||||| || ||||| ||| Sbjct 257 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 316 Query 288454 GTCTTGACGAATATCTGCATT 288474 ||||| || || || |||||| Sbjct 317 GTCTTAACAAAAATTTGCATT 337 Score = 96.9 bits (106), Expect = 8e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || || |||||||| || ||| ||| |||||||||||||| || ||||| || Sbjct 480 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 539 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || || || ||||| | ||| | ||||||||| | |||||||| || ||||| ||| Sbjct 540 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 599 Query 288454 GTCTTGACGAATATCTGCATT 288474 ||||| || || || |||||| Sbjct 600 GTCTTAACAAAAATTTGCATT 620 Score = 96.9 bits (106), Expect = 8e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || || |||| ||| || ||| ||| ||||| ||||||||||| ||||| || Sbjct 26375 CCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 26434 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || || || ||||| | ||| | ||||||||| | |||||||| || ||||| ||| Sbjct 26435 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 26494 Query 288454 GTCTTGACGAATATCTGCATT 288474 ||||| ||||| || |||||| Sbjct 26495 GTCTTAACGAAAATTTGCATT 26515 >seq326 Length=30629 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || || |||||||| || ||| ||| |||||||||||||| || ||||| || Sbjct 17678 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 17737 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || || || ||||| | ||| | ||||||||| | |||||||| || ||||| ||| Sbjct 17738 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 17797 Query 288454 GTCTTGACGAATATCTGCATT 288474 ||||| ||||| || |||||| Sbjct 17798 GTCTTAACGAAAATTTGCATT 17818 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || || || |||||||| |||||| ||| ||||| ||||||||||| ||||| Sbjct 19766 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 19825 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 | ||||| ||||| || | || | ||| ||||| || || || || ||||| ||| Sbjct 19826 CCCTTCACATTTTCAATTGTGTCAGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 19885 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 ||||| || || |||||||||||| Sbjct 19886 AGAGTTTTCACAAATATCTGCATT 19909 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || || |||||||| || ||| ||| |||||||||||||| || ||||| || Sbjct 18523 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 18582 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || || || ||||| | ||| | ||||||||| | ||||| || || ||||| ||| Sbjct 18583 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAATGTGATGGTTTTGCCGGTGAGA 18642 Query 288454 GTCTTGACGAATATCTGCATT 288474 ||||| || || || |||||| Sbjct 18643 GTCTTAACAAAAATTTGCATT 18663 >seq2524 Length=468 Score = 96.9 bits (106), Expect = 8e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || || |||||||| || ||| ||| |||||||||||||| || ||||| || Sbjct 233 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 292 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || || || ||||| | ||| | ||||||||| | |||||||| || ||||| ||| Sbjct 293 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 352 Query 288454 GTCTTGACGAATATCTGCATT 288474 ||||| || || || |||||| Sbjct 353 GTCTTAACAAAAATTTGCATT 373 >seq1863 Length=625 Score = 96.9 bits (106), Expect = 8e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || || |||||||| || ||| ||| |||||||||||||| || ||||| || Sbjct 146 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 87 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || || |||||||| | ||| | |||||||| | |||||||| || ||||| ||| Sbjct 86 TTTACATTTTCTATTGTATCAGATGGCTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 27 Query 288454 GTCTTGACGAATATCTGCATT 288474 ||||| || || || |||||| Sbjct 26 GTCTTAACAAAAATTTGCATT 6 Score = 96.9 bits (106), Expect = 8e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || || |||||||| || ||| ||| |||||||||||||| || ||||| || Sbjct 429 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 370 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || || || ||||| | ||| | ||||||||| | |||||||| || ||||| ||| Sbjct 369 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 310 Query 288454 GTCTTGACGAATATCTGCATT 288474 ||||| || || || |||||| Sbjct 309 GTCTTAACAAAAATTTGCATT 289 >seq123 Length=120441 Score = 91.5 bits (100), Expect = 3e-13 Identities = 180/260 (69%), Gaps = 10/260 (4%) Strand=Plus/Minus Query 325393 GTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGA 325452 ||||||||||||||| || || ||| || || | || | ||||| | |||| Sbjct 82506 GTTGATGTTATTGCTGCCCACGAAATTATGAGCCAAATTTATAATGGTGCTCATCAGACT 82447 Query 325453 TGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCTT 325512 ||||||| |||||||| || ||| || |||||| |||| | ||| || || || Sbjct 82446 GACTTCGCCGTGGTGATAAGCTGAATGTTCAGCAACGGAACCAGCAAGCTGAGCGACTTT 82387 Query 325513 CACGTCGGTCGTCAA--ATTGCGCTTGAA--AGCTGAATATATCACTTTCCGTTGAGAAG 325568 ||| || |||| | ||||||||||| | |||| | | ||||| ||||| || Sbjct 82386 CACTTC--TCGTTTATCGTTGCGCTTGAAACACGTGAACAAA--ACTTTACGTTGTCCAG 82331 Query 325569 GTTTGAAACCATCAACGACCGACGGAATGCTTCGTTCCAGAT-CGTACCGCGAGAACAAA 325627 | || || |||||||| | ||| |||||||| || || || | | || ||||||| Sbjct 82330 GCTTCAAGCCATCAACTATCGAAGGAATGCTACGCTCGTTATCCATGTTGC-TGAACAAA 82272 Query 325628 ATAAGTTCCTTGTCGATGAA 325647 || | || ||||||||||| Sbjct 82271 ATCAACTCTTTGTCGATGAA 82252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179564454669778