Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24]
5,951 sequences; 50,853,738 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq332 102 2e-16
seq326 102 2e-16
seq2524 96.9 8e-15
seq1863 96.9 8e-15
seq123 91.5 3e-13
>seq332
Length=28044
Score = 102 bits (112), Expect = 2e-16
Identities = 109/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390
|| || || || |||||||| |||||| ||| ||||| ||||||||||| |||||
Sbjct 1443 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 1502
Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450
| ||||| ||||| | | || | ||| ||||| || || || || |||||||||
Sbjct 1503 CCCTTCACATTTTCAACTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCGGTC 1562
Query 288451 AGAGTCTTGACGAATATCTGCATT 288474
||||| ||||| ||||||||||||
Sbjct 1563 AGAGTTTTGACAAATATCTGCATT 1586
Score = 102 bits (112), Expect = 2e-16
Identities = 109/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390
|| || || || |||||||| |||||| ||| ||||| ||||||||||| |||||
Sbjct 17800 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 17859
Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450
| ||||| ||||| | | || | ||| ||||| || || || || |||||||||
Sbjct 17860 CCCTTCACATTTTCAACTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCGGTC 17919
Query 288451 AGAGTCTTGACGAATATCTGCATT 288474
||||| ||||| ||||||||||||
Sbjct 17920 AGAGTTTTGACAAATATCTGCATT 17943
Score = 96.9 bits (106), Expect = 8e-15
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393
|| || || |||||||| || ||| ||| |||||||||||||| || ||||| ||
Sbjct 197 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 256
Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453
|| || || ||||| | ||| | ||||||||| | |||||||| || ||||| |||
Sbjct 257 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 316
Query 288454 GTCTTGACGAATATCTGCATT 288474
||||| || || || ||||||
Sbjct 317 GTCTTAACAAAAATTTGCATT 337
Score = 96.9 bits (106), Expect = 8e-15
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393
|| || || |||||||| || ||| ||| |||||||||||||| || ||||| ||
Sbjct 480 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 539
Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453
|| || || ||||| | ||| | ||||||||| | |||||||| || ||||| |||
Sbjct 540 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 599
Query 288454 GTCTTGACGAATATCTGCATT 288474
||||| || || || ||||||
Sbjct 600 GTCTTAACAAAAATTTGCATT 620
Score = 96.9 bits (106), Expect = 8e-15
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393
|| || || |||| ||| || ||| ||| ||||| ||||||||||| ||||| ||
Sbjct 26375 CCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 26434
Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453
|| || || ||||| | ||| | ||||||||| | |||||||| || ||||| |||
Sbjct 26435 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 26494
Query 288454 GTCTTGACGAATATCTGCATT 288474
||||| ||||| || ||||||
Sbjct 26495 GTCTTAACGAAAATTTGCATT 26515
>seq326
Length=30629
Score = 102 bits (112), Expect = 2e-16
Identities = 107/141 (76%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393
|| || || |||||||| || ||| ||| |||||||||||||| || ||||| ||
Sbjct 17678 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 17737
Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453
|| || || ||||| | ||| | ||||||||| | |||||||| || ||||| |||
Sbjct 17738 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 17797
Query 288454 GTCTTGACGAATATCTGCATT 288474
||||| ||||| || ||||||
Sbjct 17798 GTCTTAACGAAAATTTGCATT 17818
Score = 98.7 bits (108), Expect = 2e-15
Identities = 108/144 (75%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390
|| || || || |||||||| |||||| ||| ||||| ||||||||||| |||||
Sbjct 19766 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 19825
Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450
| ||||| ||||| || | || | ||| ||||| || || || || ||||| |||
Sbjct 19826 CCCTTCACATTTTCAATTGTGTCAGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 19885
Query 288451 AGAGTCTTGACGAATATCTGCATT 288474
||||| || || ||||||||||||
Sbjct 19886 AGAGTTTTCACAAATATCTGCATT 19909
Score = 93.3 bits (102), Expect = 1e-13
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393
|| || || |||||||| || ||| ||| |||||||||||||| || ||||| ||
Sbjct 18523 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 18582
Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453
|| || || ||||| | ||| | ||||||||| | ||||| || || ||||| |||
Sbjct 18583 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAATGTGATGGTTTTGCCGGTGAGA 18642
Query 288454 GTCTTGACGAATATCTGCATT 288474
||||| || || || ||||||
Sbjct 18643 GTCTTAACAAAAATTTGCATT 18663
>seq2524
Length=468
Score = 96.9 bits (106), Expect = 8e-15
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393
|| || || |||||||| || ||| ||| |||||||||||||| || ||||| ||
Sbjct 233 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 292
Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453
|| || || ||||| | ||| | ||||||||| | |||||||| || ||||| |||
Sbjct 293 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 352
Query 288454 GTCTTGACGAATATCTGCATT 288474
||||| || || || ||||||
Sbjct 353 GTCTTAACAAAAATTTGCATT 373
>seq1863
Length=625
Score = 96.9 bits (106), Expect = 8e-15
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393
|| || || |||||||| || ||| ||| |||||||||||||| || ||||| ||
Sbjct 146 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 87
Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453
|| || |||||||| | ||| | |||||||| | |||||||| || ||||| |||
Sbjct 86 TTTACATTTTCTATTGTATCAGATGGCTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 27
Query 288454 GTCTTGACGAATATCTGCATT 288474
||||| || || || ||||||
Sbjct 26 GTCTTAACAAAAATTTGCATT 6
Score = 96.9 bits (106), Expect = 8e-15
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393
|| || || |||||||| || ||| ||| |||||||||||||| || ||||| ||
Sbjct 429 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 370
Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453
|| || || ||||| | ||| | ||||||||| | |||||||| || ||||| |||
Sbjct 369 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 310
Query 288454 GTCTTGACGAATATCTGCATT 288474
||||| || || || ||||||
Sbjct 309 GTCTTAACAAAAATTTGCATT 289
>seq123
Length=120441
Score = 91.5 bits (100), Expect = 3e-13
Identities = 180/260 (69%), Gaps = 10/260 (4%)
Strand=Plus/Minus
Query 325393 GTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGA 325452
||||||||||||||| || || ||| || || | || | ||||| | ||||
Sbjct 82506 GTTGATGTTATTGCTGCCCACGAAATTATGAGCCAAATTTATAATGGTGCTCATCAGACT 82447
Query 325453 TGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCTT 325512
||||||| |||||||| || ||| || |||||| |||| | ||| || || ||
Sbjct 82446 GACTTCGCCGTGGTGATAAGCTGAATGTTCAGCAACGGAACCAGCAAGCTGAGCGACTTT 82387
Query 325513 CACGTCGGTCGTCAA--ATTGCGCTTGAA--AGCTGAATATATCACTTTCCGTTGAGAAG 325568
||| || |||| | ||||||||||| | |||| | | ||||| ||||| ||
Sbjct 82386 CACTTC--TCGTTTATCGTTGCGCTTGAAACACGTGAACAAA--ACTTTACGTTGTCCAG 82331
Query 325569 GTTTGAAACCATCAACGACCGACGGAATGCTTCGTTCCAGAT-CGTACCGCGAGAACAAA 325627
| || || |||||||| | ||| |||||||| || || || | | || |||||||
Sbjct 82330 GCTTCAAGCCATCAACTATCGAAGGAATGCTACGCTCGTTATCCATGTTGC-TGAACAAA 82272
Query 325628 ATAAGTTCCTTGTCGATGAA 325647
|| | || |||||||||||
Sbjct 82271 ATCAACTCTTTGTCGATGAA 82252
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179564454669778
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |