Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24] 5,951 sequences; 50,853,738 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq123 95.1 3e-14 >seq123 Length=120441 Score = 95.1 bits (104), Expect = 3e-14 Identities = 227/337 (67%), Gaps = 10/337 (3%) Strand=Plus/Minus Query 297437 GTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGG 297496 || ||||| |||| |||||| || ||| | || || | | || | || || || Sbjct 82583 GTAAAAATGTATCTTGCACTGGCCGCATCTCTGCCGCCGAGAAGTCGAGTGCCAAATTGA 82524 Query 297497 CCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACG 297556 || ||| | ||| ||||||||||||||| || || ||| || || | || | Sbjct 82523 CCAATCGGTAGCAATATGTTGATGTTATTGCTGCCCACGAAATTATGAGCCAAATTTATA 82464 Query 297557 ATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCG 297616 ||||| | |||| ||||||| |||||||| || ||| || |||||| |||| Sbjct 82463 ATGGTGCTCATCAGACTGACTTCGCCGTGGTGATAAGCTGAATGTTCAGCAACGGAACCA 82404 Query 297617 CTGAACTGTGCAACCTTCACGTCGGTCGTCAA--ATTGCGCTTGAA--AGCTGAATATAT 297672 | ||| || || ||||| || |||| | ||||||||||| | |||| | | Sbjct 82403 GCAAGCTGAGCGACTTTCACTTC--TCGTTTATCGTTGCGCTTGAAACACGTGAACAAA- 82347 Query 297673 CACTTTCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAATGCTTCGTTCCAGAT- 297731 ||||| ||||| ||| || || |||||||| | ||| |||||||| || || || Sbjct 82346 -ACTTTACGTTGTCCAGGCTTCAAGCCATCAACTATCGAAGGAATGCTACGCTCGTTATC 82288 Query 297732 CGTACCGCGAGAACAAAATAAGTTCCTTGTCGATGAA 297768 | | || ||||||||| | || ||||||||||| Sbjct 82287 CATGTTGC-TGAACAAAATCAACTCTTTGTCGATGAA 82252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102795908501850