Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24]
5,951 sequences; 50,853,738 total letters
Query= NC_009899.1
Length=344691
Score E
Sequences producing significant alignments: (Bits) Value
seq123 95.1 3e-14
>seq123
Length=120441
Score = 95.1 bits (104), Expect = 3e-14
Identities = 227/337 (67%), Gaps = 10/337 (3%)
Strand=Plus/Minus
Query 297437 GTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGG 297496
|| ||||| |||| |||||| || ||| | || || | | || | || || ||
Sbjct 82583 GTAAAAATGTATCTTGCACTGGCCGCATCTCTGCCGCCGAGAAGTCGAGTGCCAAATTGA 82524
Query 297497 CCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACG 297556
|| ||| | ||| ||||||||||||||| || || ||| || || | || |
Sbjct 82523 CCAATCGGTAGCAATATGTTGATGTTATTGCTGCCCACGAAATTATGAGCCAAATTTATA 82464
Query 297557 ATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCG 297616
||||| | |||| ||||||| |||||||| || ||| || |||||| ||||
Sbjct 82463 ATGGTGCTCATCAGACTGACTTCGCCGTGGTGATAAGCTGAATGTTCAGCAACGGAACCA 82404
Query 297617 CTGAACTGTGCAACCTTCACGTCGGTCGTCAA--ATTGCGCTTGAA--AGCTGAATATAT 297672
| ||| || || ||||| || |||| | ||||||||||| | |||| | |
Sbjct 82403 GCAAGCTGAGCGACTTTCACTTC--TCGTTTATCGTTGCGCTTGAAACACGTGAACAAA- 82347
Query 297673 CACTTTCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAATGCTTCGTTCCAGAT- 297731
||||| ||||| ||| || || |||||||| | ||| |||||||| || || ||
Sbjct 82346 -ACTTTACGTTGTCCAGGCTTCAAGCCATCAACTATCGAAGGAATGCTACGCTCGTTATC 82288
Query 297732 CGTACCGCGAGAACAAAATAAGTTCCTTGTCGATGAA 297768
| | || ||||||||| | || |||||||||||
Sbjct 82287 CATGTTGC-TGAACAAAATCAACTCTTTGTCGATGAA 82252
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1102795908501850
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |