Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24]
5,951 sequences; 50,853,738 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq1 102 9e-17
seq227 96.9 4e-15
seq28 96.9 4e-15
seq9 96.9 4e-15
>seq1
Length=887815
Score = 102 bits (112), Expect = 9e-17
Identities = 73/84 (87%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 56996 TGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 57055
|| |||| |||||| |||| | |||||||||| |||| |||||||||||||||| ||
Sbjct 301462 TGGAAAAACTTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAAT 301403
Query 57056 ACTCACCACTATACTACCGAGGAT 57079
||||||||||||||||||||||||
Sbjct 301402 ACTCACCACTATACTACCGAGGAT 301379
>seq227
Length=71895
Score = 96.9 bits (106), Expect = 4e-15
Identities = 77/93 (83%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 56986 TTAACGTTTATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGAC 57045
|||| | ||| || ||| |||| |||| | |||||||||| |||| ||||||||||
Sbjct 53729 TTAAATTATATAAATAATCAACTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGAC 53788
Query 57046 AGGCGGACATACTCACCACTATACTACCGAGGA 57078
|||||| |||||||||||||||||||||||||
Sbjct 53789 AGGCGGGAATACTCACCACTATACTACCGAGGA 53821
>seq28
Length=299044
Score = 96.9 bits (106), Expect = 4e-15
Identities = 67/76 (88%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| |||| | |||||||||| |||| |||||||||||||||| |||||||||||||
Sbjct 71483 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 71424
Query 57067 TACTACCGAGGATTGA 57082
|||||||||||| |||
Sbjct 71423 TACTACCGAGGACTGA 71408
>seq9
Length=435887
Score = 96.9 bits (106), Expect = 4e-15
Identities = 65/73 (89%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| |||| | |||||||||| |||| |||||||||||||||| |||||||||||||
Sbjct 188281 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 188340
Query 57067 TACTACCGAGGAT 57079
|||||||||||||
Sbjct 188341 TACTACCGAGGAT 188353
Score = 96.9 bits (106), Expect = 4e-15
Identities = 65/73 (89%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| |||| | |||||||||| |||| |||||||||||||||| |||||||||||||
Sbjct 188978 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 189037
Query 57067 TACTACCGAGGAT 57079
|||||||||||||
Sbjct 189038 TACTACCGAGGAT 189050
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543172391757840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |