Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24]
5,951 sequences; 50,853,738 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq146 116 4e-21
seq1863 96.9 3e-15
seq332 96.9 3e-15
seq326 96.9 3e-15
seq2524 93.3 4e-14
seq5215 86.0 6e-12
>seq146
Length=107015
Score = 116 bits (128), Expect = 4e-21
Identities = 178/254 (70%), Gaps = 0/254 (0%)
Strand=Plus/Minus
Query 154164 TTTGCAATGCGCAATTTTAAATCTGCCCAATTCCACAAGTTGGTAGGTTGCACGTTCCAC 154223
||| ||||||| |||| || | |||||| |||||| | ||||| || || ||||||
Sbjct 11759 TTTTCAATGCGACATTTCAACGATTCCCAATCCCACAAATCCGTAGGCTGAACATTCCAC 11700
Query 154224 ATGTCGTATTGCAAAACACCCAAACTCGCCGGACTGTCACTATAACTAGAGTACGGCCCG 154283
||||| ||||| | || |||| ||| || || | | |||| | ||| || ||
Sbjct 11699 ATGTCATATTGAAGAATACCCTTACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCA 11640
Query 154284 TTCAGTTTTGCCAAGTCGCAACTGGCTTCTAACGCCGCATAGTATACGGTTTCGGCAATT 154343
| |||||||||| ||||||||| ||||||||| ||||| || | |||||| ||||
Sbjct 11639 AACTGTTTTGCCAAATCGCAACTGCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATT 11580
Query 154344 TGTTTGTTTAACATTTTGGCTTTGTCACTTTCGTACGGCAATCCCAATATACAAAAAGCA 154403
| || || |||| | | |||| || ||| |||| ||| || | | |||||||
Sbjct 11579 TTCTTATTCAACAATCTAGCTTCTTCGGATTCAAACGGATATCGCATCAAAATAAAAGCA 11520
Query 154404 TCGGCGAGCCCTTG 154417
|| || | |||||
Sbjct 11519 TCCGCCAATCCTTG 11506
Score = 91.5 bits (100), Expect = 1e-13
Identities = 98/130 (75%), Gaps = 0/130 (0%)
Strand=Plus/Minus
Query 154626 TATTGCACAATTTCTGCGCACAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTC 154685
||||| |||||||||| ||||| || ||| || || ||||| |||| |||||||
Sbjct 11153 TATTGAACAATTTCTGTGCACAGGTTTGAACATTTTATAGTACCCAGATTTTGCTGATTC 11094
Query 154686 GATTTGATGTTGCATGCGTCTTTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTT 154745
||||| | ||||| || |||||||| | || |||| ||||| ||||| | ||| |
Sbjct 11093 GATTTTCTATTGCACGCATCTTTGTAGACCATAAACGGTGTGCCGGTTTCAATTTGAGAC 11034
Query 154746 TCAATAATTG 154755
||||||||||
Sbjct 11033 TCAATAATTG 11024
Score = 84.2 bits (92), Expect = 2e-11
Identities = 161/235 (69%), Gaps = 2/235 (1%)
Strand=Plus/Minus
Query 154814 TTCGTACAGTTTTTCAAACTCTAAACTGTACACGTCCGACAAACCGGGACAGCGGTCGGG 154873
|||||| | |||||||||||| | ||| |||| ||| || ||||| | ||
Sbjct 10905 TTCGTATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCATGAGG 10846
Query 154874 ACACATCAATGACCACATTTCGTTTTGTTGTACGCGTTTCATAAACAAATCCGGCACCCA 154933
||||||| |||||| | ||| || | ||| ||||| || | ||| || | |||
Sbjct 10845 GCACATCAGTGACCAATCTCCGTCGGCTTCAATGCGCTTCATGAATAGATCAGGTATCCA 10786
Query 154934 CAAAGCGTACAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTTTCGCTTTAAATT 154993
| || || |||||||| || || || ||||| |||| || ||| ||| |
Sbjct 10785 GAGGGCATAAAACAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTG-TTCTTTTTCGCGT 10727
Query 154994 CAA-AAAATCATATATGTCGGCGTGCCACGGCTCTAAATATACGGCCATCGCGCC 155047
||| ||||||| ||||||| |||||||| || || ||||| || || | ||| ||
Sbjct 10726 CAAGAAAATCAAATATGTCTGCGTGCCAAGGTTCCAAATAGACCGCAAACGCCCC 10672
>seq1863
Length=625
Score = 96.9 bits (106), Expect = 3e-15
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363
|| ||| |||| || || ||||| || || |||||||||||||| ||||| |||||
Sbjct 429 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 370
Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423
|||||| ||| | ||||||| | || ||||||| || | || |||||||| | |
Sbjct 369 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 310
Query 64424 GTTTTTACGAAAATTTGCATT 64444
|| || || ||||||||||||
Sbjct 309 GTCTTAACAAAAATTTGCATT 289
Score = 87.8 bits (96), Expect = 2e-12
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363
|| ||| |||| || || ||||| || || |||||||||||||| ||||| |||||
Sbjct 146 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 87
Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423
|||||| || | ||||||| | || ||||| | || | || |||||||| | |
Sbjct 86 TTTACATTTTCTATTGTATCAGATGGCTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 27
Query 64424 GTTTTTACGAAAATTTGCATT 64444
|| || || ||||||||||||
Sbjct 26 GTCTTAACAAAAATTTGCATT 6
>seq332
Length=28044
Score = 96.9 bits (106), Expect = 3e-15
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363
|| ||| |||| || || ||||| || || |||||||||||||| ||||| |||||
Sbjct 197 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 256
Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423
|||||| ||| | ||||||| | || ||||||| || | || |||||||| | |
Sbjct 257 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 316
Query 64424 GTTTTTACGAAAATTTGCATT 64444
|| || || ||||||||||||
Sbjct 317 GTCTTAACAAAAATTTGCATT 337
Score = 96.9 bits (106), Expect = 3e-15
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363
|| ||| |||| || || ||||| || || ||||||||||| || || ||||||||
Sbjct 26940 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 26999
Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423
|||||| ||| | ||||||| | || ||||||| || | || |||||||| | |
Sbjct 27000 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 27059
Query 64424 GTTTTTACGAAAATTTGCATT 64444
|| || |||||||||||||||
Sbjct 27060 GTCTTAACGAAAATTTGCATT 27080
Score = 93.3 bits (102), Expect = 4e-14
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363
|| ||| |||| || || ||||| || || |||||||||||||| ||||| |||||
Sbjct 480 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 539
Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423
|||||| ||| | ||||||| | || ||||| | || | || |||||||| | |
Sbjct 540 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 599
Query 64424 GTTTTTACGAAAATTTGCATT 64444
|| || || ||||||||||||
Sbjct 600 GTCTTAACAAAAATTTGCATT 620
Score = 93.3 bits (102), Expect = 4e-14
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363
|| ||| |||| | || ||||| || || |||||||| ||||| || ||||||||
Sbjct 26375 CCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 26434
Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423
|||||| ||| | ||||||| | || ||||||| || | || |||||||| | |
Sbjct 26435 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 26494
Query 64424 GTTTTTACGAAAATTTGCATT 64444
|| || |||||||||||||||
Sbjct 26495 GTCTTAACGAAAATTTGCATT 26515
Score = 87.8 bits (96), Expect = 2e-12
Identities = 110/151 (73%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353
|| |||||| || ||| |||| | || || || || || ||||||||||| || || ||
Sbjct 27489 AAACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTG 27548
Query 64354 TATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413
|||||| |||||| ||| | ||||||| | || ||||| | || | || ||
Sbjct 27549 TATTTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTT 27608
Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444
|||||| | ||| || || ||||||||||||
Sbjct 27609 GCCGGTAAGAGTCTTAACAAAAATTTGCATT 27639
Score = 87.8 bits (96), Expect = 2e-12
Identities = 110/151 (73%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353
|| |||||| || ||| |||| | || || || || ||||||||||| ||||| |||||
Sbjct 27768 AAACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTG 27827
Query 64354 TATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413
||||||| || ||| || | ||||||| | || ||||| | || | ||| ||
Sbjct 27828 TATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAACGTGATGGTTTT 27887
Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444
|| || | ||| || || ||||||||||||
Sbjct 27888 CCCAGTAAGAGTCTTAACAAAAATTTGCATT 27918
Score = 86.0 bits (94), Expect = 6e-12
Identities = 106/145 (73%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 64300 CTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359
||| || ||| |||| | || ||||| || || ||||||||||| || || ||||||||
Sbjct 26653 CTTACCAGCAAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTT 26712
Query 64360 TTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419
|||||| ||| | ||||||| | || ||||| | || | || ||||||||
Sbjct 26713 CCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGT 26772
Query 64420 CAAAGTTTTTACGAAAATTTGCATT 64444
| ||| || || ||||||||||||
Sbjct 26773 AAGAGTCTTAACAAAAATTTGCATT 26797
Score = 86.0 bits (94), Expect = 6e-12
Identities = 106/145 (73%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 64300 CTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359
||| || ||| |||| | ||||| || || || ||||||||||| || || ||||||||
Sbjct 27216 CTTACCAGCAAAAATCAAACGCTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTT 27275
Query 64360 TTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419
|||||| ||| | ||||||| | || ||||| | || | || ||||||||
Sbjct 27276 CCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGT 27335
Query 64420 CAAAGTTTTTACGAAAATTTGCATT 64444
| ||| || || ||||||||||||
Sbjct 27336 AAGAGTCTTAACAAAAATTTGCATT 27360
>seq326
Length=30629
Score = 96.9 bits (106), Expect = 3e-15
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363
|| ||| |||| || || ||||| || || |||||||||||||| ||||| |||||
Sbjct 17678 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 17737
Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423
|||||| ||| | ||||||| | || ||||| | || | || |||||||| | |
Sbjct 17738 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 17797
Query 64424 GTTTTTACGAAAATTTGCATT 64444
|| || |||||||||||||||
Sbjct 17798 GTCTTAACGAAAATTTGCATT 17818
Score = 96.9 bits (106), Expect = 3e-15
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363
|| ||| |||| || || ||||| || || |||||||||||||| ||||| |||||
Sbjct 18523 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 18582
Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423
|||||| ||| | ||||||| | || ||||| | || | ||| |||||||| | |
Sbjct 18583 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAATGTGATGGTTTTGCCGGTGAGA 18642
Query 64424 GTTTTTACGAAAATTTGCATT 64444
|| || || ||||||||||||
Sbjct 18643 GTCTTAACAAAAATTTGCATT 18663
>seq2524
Length=468
Score = 93.3 bits (102), Expect = 4e-14
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363
|| ||| |||| || || ||||| || || |||||||||||||| ||||| |||||
Sbjct 233 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 292
Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423
|||||| ||| | ||||||| | || ||||| | || | || |||||||| | |
Sbjct 293 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 352
Query 64424 GTTTTTACGAAAATTTGCATT 64444
|| || || ||||||||||||
Sbjct 353 GTCTTAACAAAAATTTGCATT 373
>seq5215
Length=241
Score = 86.0 bits (94), Expect = 6e-12
Identities = 106/145 (73%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 64300 CTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359
||| || ||| |||| | || || || || ||||||||||| ||||| |||||||||||
Sbjct 92 CTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGTATTTT 151
Query 64360 TTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419
| || ||| || | ||||||| | || ||||| | || | || ||||||||
Sbjct 152 TCCTTTCACATTTTCTATTGTATCAGATGGCTCTACTTCCAAGGTGATCGTTTTGCCGGT 211
Query 64420 CAAAGTTTTTACGAAAATTTGCATT 64444
| ||| || || ||||||||||||
Sbjct 212 AAGAGTCTTAACAAAAATTTGCATT 236
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499607632672440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |