Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24] 5,951 sequences; 50,853,738 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq72 109 4e-19 >seq72 Length=186561 Score = 109 bits (120), Expect = 4e-19 Identities = 101/128 (79%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 118179 CCGTCGCGACCGGCCCTTCCTATCTCTTGATAATAACCGTCCAGTGATTTGGGCATACTG 118238 |||||||| ||||| | || | |||||||||||||| || | ||||| ||||| ||| Sbjct 22876 CCGTCGCGTCCGGCACGCCCAGTTTCTTGATAATAACCTTCGATCGATTTTGGCATGCTG 22935 Query 118239 TGATGTATCACCAACCGCACGTCGGGTTTATCGATGCCCATCCCGAACGCTATCGTCGAA 118298 || || || || || |||||||| || || ||||||||||| ||||| || ||||||| | Sbjct 22936 TGGTGAATGACGAAACGCACGTCCGGCTTGTCGATGCCCATGCCGAAAGCAATCGTCGCA 22995 Query 118299 CATATCAC 118306 || || || Sbjct 22996 CAAATGAC 23003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381745110853944