Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24] 5,951 sequences; 50,853,738 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq5215 109 5e-19 seq1863 105 6e-18 seq2524 96.9 3e-15 seq332 96.9 3e-15 seq117 96.9 3e-15 seq326 93.3 4e-14 >seq5215 Length=241 Score = 109 bits (120), Expect = 5e-19 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 ||||| || || || | ||||| ||||| || ||||| ||||| || ||||||||||| Sbjct 86 CAATTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTG 145 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 |||||| ||| | ||||| || || || | ||| ||||| | || | |||||| Sbjct 146 TATTTTTCCTTTCACATTTTCTATTGTATCAGATGGCTCTACTTCCAAGGTGATCGTTTT 205 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||| ||||| || |||||||||||||| Sbjct 206 GCCGGTAAGAGTCTTAACAAAAATTTGCAT 235 >seq1863 Length=625 Score = 105 bits (116), Expect = 6e-18 Identities = 102/131 (78%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269 |||| |||||||| || || ||||| |||||||||||||||||||| ||| | | Sbjct 137 ATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCTTTTACATTT 78 Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329 |||| || || || | ||| ||||| | || | |||||||||||| ||||| || ||| Sbjct 77 TCTATTGTATCAGATGGCTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGAGTCTTAACA 18 Query 45330 AAAATTTGCAT 45340 ||||||||||| Sbjct 17 AAAATTTGCAT 7 Score = 96.9 bits (106), Expect = 3e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269 |||| |||||||| || || ||||| |||||||||||||||||||| ||| | Sbjct 420 ATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCTTTTACATTC 361 Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329 |||| || || || | || ||||| | || | |||||||||||| ||||| || ||| Sbjct 360 TCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGAGTCTTAACA 301 Query 45330 AAAATTTGCAT 45340 ||||||||||| Sbjct 300 AAAATTTGCAT 290 >seq2524 Length=468 Score = 96.9 bits (106), Expect = 3e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269 |||| |||||||| || || ||||| |||||||||||||||||||| ||| | Sbjct 242 ATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCTTTTACATTC 301 Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329 |||| || || || | || ||||| | || | |||||||||||| ||||| || ||| Sbjct 302 TCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGAGTCTTAACA 361 Query 45330 AAAATTTGCAT 45340 ||||||||||| Sbjct 362 AAAATTTGCAT 372 >seq332 Length=28044 Score = 96.9 bits (106), Expect = 3e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269 |||| |||||||| || || ||||| |||||||||||||||||||| ||| | Sbjct 206 ATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCTTTTACATTC 265 Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329 |||| || || || | || ||||| | || | |||||||||||| ||||| || ||| Sbjct 266 TCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGAGTCTTAACA 325 Query 45330 AAAATTTGCAT 45340 ||||||||||| Sbjct 326 AAAATTTGCAT 336 Score = 96.9 bits (106), Expect = 3e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269 |||| |||||||| || || ||||| |||||||||||||||||||| ||| | Sbjct 489 ATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCTTTTACATTC 548 Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329 |||| || || || | || ||||| | || | |||||||||||| ||||| || ||| Sbjct 549 TCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGAGTCTTAACA 608 Query 45330 AAAATTTGCAT 45340 ||||||||||| Sbjct 609 AAAATTTGCAT 619 Score = 95.1 bits (104), Expect = 1e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 ||||| || || || | ||||| |||||||| ||||| ||||| ||||| ||||| || Sbjct 26647 CAATTACTTACCAGCAAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCCTTATCCTG 26706 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 ||||| ||| | |||| || || || | || ||||| | || | |||||| Sbjct 26707 TATTTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTT 26766 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||| ||||| || |||||||||||||| Sbjct 26767 GCCGGTAAGAGTCTTAACAAAAATTTGCAT 26796 Score = 89.7 bits (98), Expect = 5e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 || || || || || | ||||| ||||| || ||||| ||||| ||||| ||||| || Sbjct 27490 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGT 27549 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 ||||| ||| | |||| || || || | || ||||| | || | ||||||| Sbjct 27550 ATTTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTG 27609 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| ||||| || |||||||||||||| Sbjct 27610 CCGGTAAGAGTCTTAACAAAAATTTGCAT 27638 Score = 89.7 bits (98), Expect = 5e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 || || || || || | ||||| ||||| || ||||| ||||| || ||||||||||| Sbjct 27769 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGT 27828 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 |||||| ||| | ||||| || || || | || ||||| | || | ||||| Sbjct 27829 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAACGTGATGGTTTTC 27888 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| || |||||||||||||| Sbjct 27889 CCAGTAAGAGTCTTAACAAAAATTTGCAT 27917 Score = 86.0 bits (94), Expect = 6e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 ||||| || || || | ||||| || || || ||||| ||||| ||||| ||||| || Sbjct 27210 CAATTACTTACCAGCAAAAATCAAACGCTGTTGATCCGGTGGAATTCCTTCCTTATCCTG 27269 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 ||||| ||| | |||| || || || | || ||||| | || | |||||| Sbjct 27270 TATTTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTT 27329 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||| ||||| || |||||||||||||| Sbjct 27330 GCCGGTAAGAGTCTTAACAAAAATTTGCAT 27359 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269 ||||| |||||||| || || ||||| || |||||||| || ||||| ||| | Sbjct 26384 ATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCTTTTACATTC 26443 Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329 |||| || || || | || ||||| | || | |||||||||||| ||||| || || Sbjct 26444 TCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGAGTCTTAACG 26503 Query 45330 AAAATTTGCAT 45340 ||||||||||| Sbjct 26504 AAAATTTGCAT 26514 >seq117 Length=123509 Score = 96.9 bits (106), Expect = 3e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267 |||||||||||||||| || || ||||||||||| |||||||||||||| ||| | Sbjct 8737 ATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTACTTTTTACAT 8796 Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327 ||| | || || || | ||| ||||| | || | ||||| || |||| ||||| | Sbjct 8797 TTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAATGTTTTCA 8856 Query 45328 CAAAAATTTGCATCGCGCGAC 45348 ||||||| ||||| ||| || Sbjct 8857 CAAAAATCTGCATTCCGCCAC 8877 Score = 96.9 bits (106), Expect = 3e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267 |||||||||||||||| || || ||||||||||| |||||||||||||| ||| | Sbjct 9024 ATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTACTTTTTACAT 9083 Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327 ||| | || || || | ||| ||||| | || | ||||| || |||| ||||| | Sbjct 9084 TTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAATGTTTTCA 9143 Query 45328 CAAAAATTTGCATCGCGCGAC 45348 ||||||| ||||| ||| || Sbjct 9144 CAAAAATCTGCATTCCGCCAC 9164 Score = 96.9 bits (106), Expect = 3e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267 |||||||||||||||| || || ||||||||||| |||||||||||||| ||| | Sbjct 9311 ATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTACTTTTCACAT 9370 Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327 ||| | || || || | ||| ||||| | || | ||||| || |||| ||||| | Sbjct 9371 TTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAATGTTTTCA 9430 Query 45328 CAAAAATTTGCATCGCGCGAC 45348 ||||||| ||||| ||| || Sbjct 9431 CAAAAATCTGCATACCGCCAC 9451 Score = 96.9 bits (106), Expect = 3e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267 |||||||||||||||| || || ||||||||||| |||||||||||||| ||| | Sbjct 9597 ATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTACTTTTCACAT 9656 Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327 ||| | || || || | ||| ||||| | || | ||||| || |||| ||||| | Sbjct 9657 TTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAATGTTTTCA 9716 Query 45328 CAAAAATTTGCATCGCGCGAC 45348 ||||||| ||||| ||| || Sbjct 9717 CAAAAATCTGCATACCGCCAC 9737 >seq326 Length=30629 Score = 93.3 bits (102), Expect = 4e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269 |||| |||||||| || || ||||| |||||||||||||||||||| ||| | Sbjct 17687 ATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCTTTTACATTC 17746 Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329 |||| || || || | || ||||| | || | |||||||||||| ||||| || || Sbjct 17747 TCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGAGTCTTAACG 17806 Query 45330 AAAATTTGCAT 45340 ||||||||||| Sbjct 17807 AAAATTTGCAT 17817 Score = 93.3 bits (102), Expect = 4e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269 |||| |||||||| || || ||||| |||||||||||||||||||| ||| | Sbjct 18532 ATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCTTTTACATTC 18591 Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329 |||| || || || | || ||||| | || | ||||||||||| ||||| || ||| Sbjct 18592 TCTATTGTATCAGATGGTTCTACTTCCAATGTGATGGTTTTGCCGGTGAGAGTCTTAACA 18651 Query 45330 AAAATTTGCAT 45340 ||||||||||| Sbjct 18652 AAAATTTGCAT 18662 Score = 86.0 bits (94), Expect = 6e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 ||||| || || || | ||||| ||||| || ||||| ||||| ||||| ||||| || Sbjct 18230 CAATTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTG 18289 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 ||||| ||| | |||| || || || | || ||||| | || | |||||| Sbjct 18290 TATTTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTT 18349 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||| ||||| || |||||||| ||||| Sbjct 18350 GCCGGTAAGAGTCTTAACAAAAATCTGCAT 18379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451969576611960