Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24] 5,951 sequences; 50,853,738 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq117 87.8 1e-12 >seq117 Length=123509 Score = 87.8 bits (96), Expect = 1e-12 Identities = 75/91 (82%), Gaps = 4/91 (4%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 ||||| || |||||||| ||||||||||||||||||||||| || ||||| || |||| Sbjct 8871 CCGCCACGTAAACGCAGCACCAAATGCAAAGTGCTTTCTTTCTGGATATTGTAGTCGG-- 8928 Query 39553 AAAACG--CGTTCATCGTCCAATTGTTTCCC 39581 | |||| || |||| |||| ||||||||| Sbjct 8929 ATAACGTACGACCATCTTCCAGTTGTTTCCC 8959 Score = 87.8 bits (96), Expect = 1e-12 Identities = 75/91 (82%), Gaps = 4/91 (4%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 ||||| || |||||||| ||||||||||||||||||||||| || ||||| || |||| Sbjct 9158 CCGCCACGTAAACGCAGCACCAAATGCAAAGTGCTTTCTTTCTGGATATTGTAGTCGG-- 9215 Query 39553 AAAACG--CGTTCATCGTCCAATTGTTTCCC 39581 | |||| || |||| |||| ||||||||| Sbjct 9216 ATAACGTACGACCATCTTCCAGTTGTTTCCC 9246 Score = 87.8 bits (96), Expect = 1e-12 Identities = 75/91 (82%), Gaps = 4/91 (4%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 ||||| || ||||| |||||||||||||||||||||||||| || ||||| || |||| Sbjct 9445 CCGCCACGTAAACGGAGTACCAAATGCAAAGTGCTTTCTTTCTGGATATTGTAGTCGG-- 9502 Query 39553 AAAACG--CGTTCATCGTCCAATTGTTTCCC 39581 | |||| || |||| |||| ||||||||| Sbjct 9503 ATAACGTACGACCATCTTCCAGTTGTTTCCC 9533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347344406042783