Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24]
5,951 sequences; 50,853,738 total letters
Query= NC_013797.1
Length=108592
Score E
Sequences producing significant alignments: (Bits) Value
seq117 87.8 1e-12
>seq117
Length=123509
Score = 87.8 bits (96), Expect = 1e-12
Identities = 75/91 (82%), Gaps = 4/91 (4%)
Strand=Plus/Plus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
||||| || |||||||| ||||||||||||||||||||||| || ||||| || ||||
Sbjct 8871 CCGCCACGTAAACGCAGCACCAAATGCAAAGTGCTTTCTTTCTGGATATTGTAGTCGG-- 8928
Query 39553 AAAACG--CGTTCATCGTCCAATTGTTTCCC 39581
| |||| || |||| |||| |||||||||
Sbjct 8929 ATAACGTACGACCATCTTCCAGTTGTTTCCC 8959
Score = 87.8 bits (96), Expect = 1e-12
Identities = 75/91 (82%), Gaps = 4/91 (4%)
Strand=Plus/Plus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
||||| || |||||||| ||||||||||||||||||||||| || ||||| || ||||
Sbjct 9158 CCGCCACGTAAACGCAGCACCAAATGCAAAGTGCTTTCTTTCTGGATATTGTAGTCGG-- 9215
Query 39553 AAAACG--CGTTCATCGTCCAATTGTTTCCC 39581
| |||| || |||| |||| |||||||||
Sbjct 9216 ATAACGTACGACCATCTTCCAGTTGTTTCCC 9246
Score = 87.8 bits (96), Expect = 1e-12
Identities = 75/91 (82%), Gaps = 4/91 (4%)
Strand=Plus/Plus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
||||| || ||||| |||||||||||||||||||||||||| || ||||| || ||||
Sbjct 9445 CCGCCACGTAAACGGAGTACCAAATGCAAAGTGCTTTCTTTCTGGATATTGTAGTCGG-- 9502
Query 39553 AAAACG--CGTTCATCGTCCAATTGTTTCCC 39581
| |||| || |||| |||| |||||||||
Sbjct 9503 ATAACGTACGACCATCTTCCAGTTGTTTCCC 9533
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 347344406042783
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |