Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24] 5,951 sequences; 50,853,738 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq282 150 7e-31 seq69 125 3e-23 seq326 122 3e-22 seq117 120 1e-21 seq332 113 2e-19 seq5215 104 9e-17 seq2524 95.1 5e-14 seq1863 95.1 5e-14 >seq282 Length=46907 Score = 150 bits (166), Expect = 7e-31 Identities = 271/393 (69%), Gaps = 5/393 (1%) Strand=Plus/Plus Query 451205 ATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATG 451264 |||||||| | || ||||| || | || | ||| | || |||||||| ||||| Sbjct 11548 ATTCAAGTCGAATACAAAGGCGAGTCGAAGTCATTTACACCAGAAGAAATCAGTGCTATG 11607 Query 451265 GTTCTTACTAAA-ATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGC 451323 || ||| | || ||||| ||||| || ||| ||| | || | |||| ||||| Sbjct 11608 GTG-TTAGTGAAGATGAAGGAAACTGCCGAAGCTTATTTGGGAAAAACTGTTAAGGATGC 11666 Query 451324 AGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGG 451383 |||||||||||||| || ||||| || ||| | || || || || || ||||| || || Sbjct 11667 CGTAATTACTGTTCCGGCATATTTTAACGATTCTCAGCGTCAGGCGACCAAAGACGCTGG 11726 Query 451384 ACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGC 451443 | ||| ||||||| |||||| | || || || || ||||| ||||| ||||| | || Sbjct 11727 AACGATTTCTGGTTTGAATGTTTTGCGTATCATCAACGAACCAACAGCGGCTGCAATTGC 11786 Query 451444 ATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGG 451503 |||||||| | | ||| | | ||| |||| || | ||||||| |||| Sbjct 11787 TTATGGACTTG---ATAGAAAGGGTGGCGGTGAACGAAATGTTCTGATATTTGACCTTGG 11843 Query 451504 TGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGC 451563 ||| || ||| |||| ||| | | | || |||||||| | ||||| || ||| | Sbjct 11844 TGGTGGTACTTTTGATGTGTCTATTTTGACCATCGAAGATGGCATTTTTGAGGTCAAGTC 11903 Query 451564 AACCAATGGTGATACTCATCTAGGAGGTGAAGA 451596 ||| |||||| |||||| | || ||||| || Sbjct 11904 TACCGCTGGTGACACTCATTTGGGTGGTGAGGA 11936 >seq69 Length=193012 Score = 125 bits (138), Expect = 3e-23 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 451219 TAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAAT 451278 ||| ||||||| ||| || |||| |||||||||||| | |||||| | ||||| Sbjct 143828 TAACGGTGAAAAGAAATTGTTCACTCCCGAAGAAATTTCAGCGATGGTTTTGTTGAAAAT 143769 Query 451279 GAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCC 451338 |||||||| || || ||| | || ||| | |||| || | || ||||| Sbjct 143768 GAAAGAAATTGCCGAGGCTTATTTGGGCAAAGAAGTGAAAAATGCCGTCGTCACGGTTCC 143709 Query 451339 CGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTT 451398 ||||||||||| ||||||||||| ||||| || ||||||||||| ||||||||| | Sbjct 143708 AGCTTATTTCAACGATGCACAACGTCAAGCTACCAAAGATGCAGGCACCATTGCTGGTCT 143649 Query 451399 AAATGTTCTTCGAATTATTAATGAACC 451425 |||||| ||||||| || || ||||| Sbjct 143648 TAATGTTGTTCGAATCATCAACGAACC 143622 >seq326 Length=30629 Score = 122 bits (134), Expect = 3e-22 Identities = 108/135 (80%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||||||||| || || ||||| ||||| || ||| | || || ||| |||| Sbjct 18098 AATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 18039 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| |||||| | | ||| ||||| || ||||||||||||||||| || ||||| Sbjct 18038 TGATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCA 17979 Query 391169 ACAACGTTTAATTTT 391183 ||||||||| ||||| Sbjct 17978 ACAACGTTTGATTTT 17964 Score = 122 bits (134), Expect = 3e-22 Identities = 108/135 (80%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||||||||| || || ||||| ||||| || ||| | || || ||| |||| Sbjct 18943 AATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 18884 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| |||||| | | ||| ||||| || ||||||||||||||||| || ||||| Sbjct 18883 TGATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCA 18824 Query 391169 ACAACGTTTAATTTT 391183 ||||||||| ||||| Sbjct 18823 ACAACGTTTGATTTT 18809 Score = 104 bits (114), Expect = 9e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||| ||||| || || ||||| ||||| || || | || || ||| |||| Sbjct 17535 AATGCAGATTTTTGTTAAGACCCTAACTGGGAAAACCATCACGTTGGAAGTGGAACCATC 17476 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| |||| | | ||| || |||||||||||||| ||||||||||| ||||| Sbjct 17475 TGATACTGTTGAGAATGTGAAAGGGAAGATTCAAGATAAGGAGGGAATTCCTCCAGATCA 17416 Query 391169 ACAACGTTTAATTTT 391183 ||| ||||| ||||| Sbjct 17415 ACAGCGTTTGATTTT 17401 Score = 104 bits (114), Expect = 9e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || || ||||| |||||||| ||||| |||||||| || || ||| | || Sbjct 19909 AATGCAGATATTTGTGAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAACCCTC 19850 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||| | |||||| | | || |||||||| ||||| || |||||||| || ||||| Sbjct 19849 TGACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCA 19790 Query 391169 ACAACGTTTAATTTT 391183 ||||||| | ||||| Sbjct 19789 ACAACGTCTGATTTT 19775 Score = 100 bits (110), Expect = 1e-15 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||||||||| || || || || ||||| || || | || || ||| |||| Sbjct 17818 AATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATC 17759 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| || || | | ||| |||||||||||||| ||||||||||| || ||||| Sbjct 17758 TGATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCA 17699 Query 391169 ACAACGTTTAATTTT 391183 |||||| | ||||| Sbjct 17698 GCAACGTCTGATTTT 17684 Score = 100 bits (110), Expect = 1e-15 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||| ||||| || || || || ||||| || || | || || ||| |||| Sbjct 18380 AATGCAGATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATC 18321 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| || || | | ||| ||||| || ||||||||||||||||| || ||||| Sbjct 18320 TGATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCA 18261 Query 391169 ACAACGTTTAATTTT 391183 ||||||||| ||||| Sbjct 18260 ACAACGTTTGATTTT 18246 Score = 95.1 bits (104), Expect = 5e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||| ||||| || || || || ||||| || || | || || ||| |||| Sbjct 18663 AATGCAAATTTTTGTTAAGACTCTCACCGGCAAAACCATCACATTGGAAGTAGAACCATC 18604 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| || || | | ||| |||||||||||||| ||||||||||| || ||||| Sbjct 18603 TGATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCA 18544 Query 391169 ACAACGTTTAATTTT 391183 |||||| | ||||| Sbjct 18543 GCAACGTCTGATTTT 18529 >seq117 Length=123509 Score = 120 bits (132), Expect = 1e-21 Identities = 114/146 (78%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 391047 ATAATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCA 391106 || ||| | || ||||| || ||||| ||||| |||||||| || || || |||||| || Sbjct 10414 ATTATGCAGATATTCGTGAAGACACTTACTGGAAAAACTATAACACTAGAAGTTGAACCA 10355 Query 391107 TCTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGAT 391166 || || | ||| ||| | ||||| |||||||| ||||||||||| |||||||||||| Sbjct 10354 TCAGACACCATCGAAAATGTTAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTCCTGAT 10295 Query 391167 CAACAACGTTTAATTTTCTCAGGGAA 391192 || ||| | ||||| || |||| || Sbjct 10294 CAGCAAAGATTAATCTTTGCAGGTAA 10269 Score = 104 bits (114), Expect = 9e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||| || |||||| | ||||| ||||| || || | || || || |||| Sbjct 8870 AATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATC 8811 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| |||||| | | ||| |||||||||||||||||||| ||||| |||||||| Sbjct 8810 TGATACGATTGAAAATGTAAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCA 8751 Query 391169 ACAACGTTTAATTTT 391183 ||||| || || || Sbjct 8750 GCAACGATTGATATT 8736 Score = 104 bits (114), Expect = 9e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||| || |||||| | ||||| ||||| || || | || || || |||| Sbjct 9157 AATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATC 9098 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| |||||| | | ||| |||||||||||||||||||| ||||| |||||||| Sbjct 9097 TGATACGATTGAAAATGTAAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCA 9038 Query 391169 ACAACGTTTAATTTT 391183 ||||| || || || Sbjct 9037 GCAACGATTGATATT 9023 Score = 98.7 bits (108), Expect = 4e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || |||||| | ||||| ||||| || || | || || || |||| Sbjct 9443 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCA 9384 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| |||||| | | ||| |||||||||||||||||||| ||||| |||||||| Sbjct 9383 GATACGATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCAG 9324 Query 391170 CAACGTTTAATTTT 391183 ||||| || || || Sbjct 9323 CAACGATTGATATT 9310 Score = 98.7 bits (108), Expect = 4e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || |||||| | ||||| ||||| || || | || || || |||| Sbjct 9729 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCA 9670 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| |||||| | | ||| |||||||||||||||||||| ||||| |||||||| Sbjct 9669 GATACGATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCAG 9610 Query 391170 CAACGTTTAATTTT 391183 ||||| || || || Sbjct 9609 CAACGATTGATATT 9596 >seq332 Length=28044 Score = 113 bits (124), Expect = 2e-19 Identities = 106/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||| ||||| || || ||||| ||||| || || | || || ||| |||| Sbjct 27918 AATGCAAATTTTTGTTAAGACTCTTACTGGGAAAACCATCACGTTGGAAGTAGAACCATC 27859 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| || ||| | | ||| |||||| |||||||| || ||||||||||| ||||| Sbjct 27858 TGATACAATAGAAAATGTGAAAGGAAAAATACAAGATAAAGAGGGAATTCCTCCGGATCA 27799 Query 391169 ACAACGTTTAATTTT 391183 ||||||||| ||||| Sbjct 27798 ACAACGTTTGATTTT 27784 Score = 100 bits (110), Expect = 1e-15 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||| ||||| || || || || ||||| || || | || || ||| |||| Sbjct 27639 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATC 27580 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| || || | | ||| ||||| || ||||||||||||||||| || ||||| Sbjct 27579 TGATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCA 27520 Query 391169 ACAACGTTTAATTTT 391183 ||||||||| ||||| Sbjct 27519 ACAACGTTTGATTTT 27505 Score = 95.1 bits (104), Expect = 5e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||| ||||| || || || || ||||| || || | || || ||| |||| Sbjct 337 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATC 278 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| || || | | ||| |||||||||||||| ||||||||||| || ||||| Sbjct 277 TGATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCA 218 Query 391169 ACAACGTTTAATTTT 391183 |||||| | ||||| Sbjct 217 GCAACGTCTGATTTT 203 Score = 95.1 bits (104), Expect = 5e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||| ||||| || || || || ||||| || || | || || ||| |||| Sbjct 620 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATC 561 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| || || | | ||| |||||||||||||| ||||||||||| || ||||| Sbjct 560 TGATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCA 501 Query 391169 ACAACGTTTAATTTT 391183 |||||| | ||||| Sbjct 500 GCAACGTCTGATTTT 486 Score = 95.1 bits (104), Expect = 5e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||| ||||| || || || || ||||| || || | || || ||| |||| Sbjct 26797 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATC 26738 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| || || | | ||| ||||| || ||||||||||||||||| || ||||| Sbjct 26737 TGATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCA 26678 Query 391169 ACAACGTTTAATTTT 391183 |||||||| ||||| Sbjct 26677 GCAACGTTTGATTTT 26663 Score = 95.1 bits (104), Expect = 5e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||||||||| || || || || ||||| || || | || || ||| |||| Sbjct 27080 AATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATC 27021 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| || || | | ||| ||||| || ||||||||||||||||| || ||||| Sbjct 27020 TGATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCAGATCA 26961 Query 391169 ACAACGTTTAATTTT 391183 |||||| | ||||| Sbjct 26960 GCAACGTCTGATTTT 26946 Score = 95.1 bits (104), Expect = 5e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||| ||||| || || || || ||||| || || | || || ||| |||| Sbjct 27360 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATC 27301 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| || || | | ||| ||||| || ||||||||||||||||| || ||||| Sbjct 27300 TGATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCA 27241 Query 391169 ACAACGTTTAATTTT 391183 ||| ||||| ||||| Sbjct 27240 ACAGCGTTTGATTTT 27226 Score = 91.5 bits (100), Expect = 6e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || || ||||| ||||| || ||||| |||||||| || || ||| | || Sbjct 1586 AATGCAGATATTTGTCAAAACTCTGACCGGGAAAACCATTACTCTGGAAGTGGAACCCTC 1527 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | ||||| | | || |||||||| ||||| || |||||||| || ||||| Sbjct 1526 AGACACAGTTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCA 1467 Query 391169 ACAACGTTTAATTTT 391183 ||||||| | ||||| Sbjct 1466 ACAACGTCTGATTTT 1452 Score = 91.5 bits (100), Expect = 6e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || || ||||| ||||| || ||||| |||||||| || || ||| | || Sbjct 17943 AATGCAGATATTTGTCAAAACTCTGACCGGGAAAACCATTACTCTGGAAGTGGAACCCTC 17884 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | ||||| | | || |||||||| ||||| || |||||||| || ||||| Sbjct 17883 AGACACAGTTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCA 17824 Query 391169 ACAACGTTTAATTTT 391183 ||||||| | ||||| Sbjct 17823 ACAACGTCTGATTTT 17809 Score = 91.5 bits (100), Expect = 6e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||||||||| || || || || ||||| || || | || || ||| |||| Sbjct 26515 AATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATC 26456 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| || || | | ||| ||||| || ||||| || |||||||| || ||||| Sbjct 26455 TGATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAAGAGGGAATTCCACCAGATCA 26396 Query 391169 ACAACGTTTAATTTT 391183 |||||||| ||||| Sbjct 26395 GCAACGTTTGATTTT 26381 >seq5215 Length=241 Score = 104 bits (114), Expect = 9e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||| ||||| || || || || ||||| || || | || || || |||| Sbjct 236 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAGCCATC 177 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| || ||| | | ||| |||||| |||||||| || ||||||||||| ||||| Sbjct 176 TGATACAATAGAAAATGTGAAAGGAAAAATACAAGATAAAGAGGGAATTCCTCCGGATCA 117 Query 391169 ACAACGTTTAATTTT 391183 ||||||||| ||||| Sbjct 116 ACAACGTTTGATTTT 102 >seq2524 Length=468 Score = 95.1 bits (104), Expect = 5e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||| ||||| || || || || ||||| || || | || || ||| |||| Sbjct 373 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATC 314 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| || || | | ||| |||||||||||||| ||||||||||| || ||||| Sbjct 313 TGATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCA 254 Query 391169 ACAACGTTTAATTTT 391183 |||||| | ||||| Sbjct 253 GCAACGTCTGATTTT 239 >seq1863 Length=625 Score = 95.1 bits (104), Expect = 5e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||| ||||| || || || || ||||| || || | || || || |||| Sbjct 6 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAGCCATC 65 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| || ||| | | ||| |||||||||||||| ||||||||||| || ||||| Sbjct 66 TGATACAATAGAAAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCA 125 Query 391169 ACAACGTTTAATTTT 391183 |||||| | ||||| Sbjct 126 GCAACGTCTGATTTT 140 Score = 95.1 bits (104), Expect = 5e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||| ||||| || || || || ||||| || || | || || ||| |||| Sbjct 289 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATC 348 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| || || | | ||| |||||||||||||| ||||||||||| || ||||| Sbjct 349 TGATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCA 408 Query 391169 ACAACGTTTAATTTT 391183 |||||| | ||||| Sbjct 409 GCAACGTCTGATTTT 423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975567757028708