Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24]
5,951 sequences; 50,853,738 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq282 336 2e-86
seq69 136 3e-26
seq285 111 1e-18
>seq282
Length=46907
Score = 336 bits (372), Expect = 2e-86
Identities = 495/701 (71%), Gaps = 0/701 (0%)
Strand=Plus/Minus
Query 518013 TTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTA 518072
|||| | ||||| || || || ||||| ||||| | ||| | || | |||| | |
Sbjct 11956 TTACCATGCGATTGTCGAAGTCCTCACCACCCAAATGAGTGTCACCAGCGGTAGACTTGA 11897
Query 518073 CTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATAT 518132
| | |||| |||||||| | | ||||| || |||||| || |||||||| | |
Sbjct 11896 CCTCAAAAATGCCATCTTCGATGGTCAAAATAGACACATCAAAAGTACCACCACCAAGGT 11837
Query 518133 CAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAG 518192
|||| || || ||||| ||| | | ||| ||||||| ||||| |||| ||||
Sbjct 11836 CAAATATCAGAACATTTCGTTCACCGCCACCCTTTCTATCAAGTCCATAAGCAATTGCAG 11777
Query 518193 CAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTT 518252
| || |||||||| || || || | ||||||||| | ||||| ||| |||| || ||||
Sbjct 11776 CCGCTGTTGGTTCGTTGATGATACGCAAAACATTCAAACCAGAAATCGTTCCAGCGTCTT 11717
Query 518253 TAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTA 518312
| || || || | || ||||||||||||||||| ||||||||||| |||||||| | |
Sbjct 11716 TGGTCGCCTGACGCTGAGAATCGTTAAAATATGCCGGAACAGTAATTACGGCATCCTTAA 11657
Query 518313 CTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAA 518372
| ||| || | |||||| || |||| ||||| || ||| | ||| | |
Sbjct 11656 CAGTTTTTCCCAAATAAGCTTCGGCAGTTTCCTTCATCTTCACTAACACCATAGCACTGA 11597
Query 518373 TTTGTTCTGGGGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTAT 518432
||| |||||| | | || ||| || || || ||| |||| || | |||||
Sbjct 11596 TTTCTTCTGGTGTAAATGACTTCGACTCGCCTTTGTATTCGACTTGAATTTTAGGTTTCG 11537
Query 518433 TACCAACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCAT 518492
||| | || |||| ||| |||||||| | ||||||||| || || || ||||
Sbjct 11536 ATCCATCGTTGATAATTTTGAATGGCCAATGTTTCATATCAGACTGCACCGCAGCATCAT 11477
Query 518493 TAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAG 518552
||| | ||| || | ||| || |||||||||| ||||| ||||| | |||
Sbjct 11476 CAAATCGACGACCGATGAGTCGCTTCGCATCAAAAACTGTATTATGAGGATTCAACGCAA 11417
Query 518553 CTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATG 518612
|||||| ||| || |||||||||||||| |||| || || || || | |||||| ||
Sbjct 11416 CTTGATTTTTTGCCGCATCTCCAATCAGTCGTTCGGTATCGGTGAAAGCAACATAACTTG 11357
Query 518613 GAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACAC 518672
| || || ||||| |||||||| || |||||||||||||||||||||| || | || |
Sbjct 11356 GCGTGGTACGATTCCCTTGATCGTTGGCAATAATTTCAACTTTACCATGCTGGAACACGC 11297
Query 518673 CTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCA 518713
| |||||||| | || || || |||||||| |||||||||
Sbjct 11296 CAACACAACTGTACGTAGTACCCAAATCAATTCCAATAGCA 11256
Score = 109 bits (120), Expect = 4e-18
Identities = 183/262 (70%), Gaps = 2/262 (1%)
Strand=Plus/Minus
Query 517604 ATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCA 517663
||| | || ||||| ||||||||||| |||||||| | ||| || |||| ||| |||
Sbjct 12421 ATACCTGCTCCATAGGCAACAGCTTCGTCAGGATTGATGCTTTTGTTAAGTTCTTTTCCA 12362
Query 517664 TTGAAAAAAT-TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAA 517722
|| ||||||| ||| || || || | || |||||||| |||| || || || || ||
Sbjct 12361 TTAAAAAAATCTTGCAACAACTTCT-GAACTTTAGGAATGCGAGTAGAACCGCCCACCAA 12303
Query 517723 TACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGG 517782
|||| |||||| | | || ||| || | ||| | ||| | | ||||||| || ||
Sbjct 12302 AACAACTTCATGAATCACTGCTTTGTCTAATTTCGCATCACGAAGAGCTTTTTCTACTGG 12243
Query 517783 TTCAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGT 517842
||| | | | | |||||||| | | | |||||||| |||||| |||| |||
Sbjct 12242 TTCCAAAGTAGAACGGAACAAGTCAGCATTCAACTCTTCGAAGCGAGCTCTTGTAATAGT 12183
Query 517843 GACATTATAATCAATTCCTTCG 517864
| | ||||||| ||||||
Sbjct 12182 GGTGTAGAAATCAATGCCTTCG 12161
>seq69
Length=193012
Score = 136 bits (150), Expect = 3e-26
Identities = 316/469 (67%), Gaps = 13/469 (3%)
Strand=Plus/Plus
Query 518201 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 518260
||||| || || |||| | |||||||||||||||||| | ||||||||||| || |||
Sbjct 143622 GGTTCGTTGATGATTCGAACAACATTAAGACCAGCAATGGTGCCTGCATCTTTGGTAGCT 143681
Query 518261 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTA 518320
|| | ||||| |||||| ||||| || ||||| || | ||||||| | ||||||||
Sbjct 143682 TGACGTTGTGCATCGTTGAAATAAGCTGGAACCGTGACGACGGCATTTTTCACTTCTTTG 143741
Query 518321 CCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCT 518380
|| | |||||| || ||| ||||||||| |||| ||| | |||||||| |||
Sbjct 143742 CCCAAATAAGCCTCGGCAATTTCTTTCATTTTCAACAAAACCATCGCTGAAATTTCTTCG 143801
Query 518381 GG---GGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCA 518437
|| | | ||| ||| |||| | | | | | || | ||||| | | |
Sbjct 143802 GGAGTGAACAATTTCTT---TTCACCGTTAACAGTAAGCTGAACGTTCGGTTTGCT-CGA 143857
Query 518438 ACATT-AATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAA 518496
|| || || ||||||||| ||| ||| | ||||| ||| | || |
Sbjct 143858 TTTTTCAACCACCGCAAATGGCCACATTTTACGATCCGCTTGAAGACTCTTATCCGACCA 143917
Query 518497 ATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTG-CAGCTT 518555
|||| ||| | | || |||||||| || | ||||| ||||| | | || | |
Sbjct 143918 TTCTCGACCGACCATACGCTTTGCATCGAATACCGTATTCTCAGGATTGGTGGTCAAC-T 143976
Query 518556 GATATTTGGCTGCATCTCCAATCAGATGTT---CTGTCTCTGTAAATGAAACATATGATG 518612
||| ||| || || || || |||||| | | || | ||||| | ||||| || |
Sbjct 143977 GATTTTTCGCGGCGTCGCCGATCAGACGCTCCCCTTCCGGCGTAAAAGCTACATACGACG 144036
Query 518613 GAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATT 518661
| || | ||||| || |||||||| |||||||||||||| ||||||
Sbjct 144037 GGGTGATTCGATTGCCCTGATCATTAGCAATAATTTCAACACGACCATT 144085
Score = 89.7 bits (98), Expect = 4e-12
Identities = 121/169 (72%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 517249 TTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAAT 517308
||| || |||| || || | | ||| || || | || | ||| ||||| ||||||||
Sbjct 142493 TTTGTCTTCGGCGGTGACGTGCAAAATGCCGTTCACGTCGATATCGAATGTAACTTCAAT 142552
Query 517309 TTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATT 517368
||| || ||||| | | |||| || || || || || || |||| | || ||| ||
Sbjct 142553 TTGTGGTACCCCACGCGGAGCCGGAGGTATGCCGGTCAGATCAAATTTCCCAAGAAGATG 142612
Query 517369 ATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACT 517417
||| ||||| || | | |||||| || ||||||| ||| |||||||||
Sbjct 142613 ATTGTCTTTGGTCATTGGTCGTTCGCCTTCGAAAACTTGAATAGTAACT 142661
>seq285
Length=45859
Score = 111 bits (122), Expect = 1e-18
Identities = 125/167 (75%), Gaps = 3/167 (2%)
Strand=Plus/Plus
Query 841327 TATTTGTGTGGTACTGATGAATATGGAACTACAACAATGATTAGAGCTCGTAAGGAAGGT 841386
||| | |||||||| ||||||||||| ||| | ||| || | |||| | | ||||||
Sbjct 18422 TATATATGTGGTACAGATGAATATGGGACTGCCACAGAGACAAAAGCTATTGAAGAAGGT 18481
Query 841387 GTAACTTGTCGTGAACTTTGTGATAAGTATTTTGAGTTACACAAAAAAGTTTATGATTGG 841446
|||||| | | | || |||||||| |||| ||| || || |||||||||| |||
Sbjct 18482 GTAACTCCTATTCAGCTCTGTGATAAATATTATGAATTGCATCGCGAAGTTTATGAATGG 18541
Query 841447 TTTAATATTGAATTTGATGTTTTTGGTAGAACATCTACAACAAAACA 841493
|||||||| |||||||| ||||||| | | | |||||||||||
Sbjct 18542 TTTAATATAAAATTTGATTATTTTGGTCGCA---CGACAACAAAACA 18585
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3780527091777406
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |