Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24]
5,951 sequences; 50,853,738 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq146 89.7 6e-13
seq5 87.8 2e-12
seq93 82.4 9e-11
>seq146
Length=107015
Score = 89.7 bits (98), Expect = 6e-13
Identities = 130/181 (72%), Gaps = 2/181 (1%)
Strand=Plus/Minus
Query 109413 ATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAGAGTTT 109472
||| ||||| || ||||| ||||| |||||| |||| | ||||||||| | | |||
Sbjct 12345 ATAGTACATCCCAGTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTT 12286
Query 109473 GGAAAGTGTCGGACTCTCC-ATAAACAAGTTCATCGACTGAGACTGATCGATGAATCGAC 109531
| | |||| ||| | || | |||| |||||| || || || |||||| |
Sbjct 12285 AGCATAATTCGG-CTCGGCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTC 12227
Query 109532 CACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTGTACA 109591
| | ||||| |||||||| |||| || |||||| ||||||||| || ||||||||||
Sbjct 12226 CCCTTTCAGCGGCCATGTCTATGACGCATTTTTGGGAAATTTCCCAAACCGTCTTGTACA 12167
Query 109592 A 109592
|
Sbjct 12166 A 12166
>seq5
Length=469529
Score = 87.8 bits (96), Expect = 2e-12
Identities = 54/58 (93%), Gaps = 0/58 (0%)
Strand=Plus/Minus
Query 136716 ATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCC 136773
|||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||
Sbjct 346799 ATAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCTAAGGTCGTGGGTTCGAGCCCC 346742
>seq93
Length=151061
Score = 82.4 bits (90), Expect = 9e-11
Identities = 53/58 (91%), Gaps = 0/58 (0%)
Strand=Plus/Plus
Query 136716 ATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCC 136773
|||||||||| ||||||||||||||||| ||||||| |||||| |||||||||||||
Sbjct 111729 ATAGCTCAGTCGGTTAGAGCGTGGTGCTAATAACGCTAAGGTCGTGGGTTCGAGCCCC 111786
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588932187547800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |