Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24] 5,951 sequences; 50,853,738 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq282 297 2e-74 seq69 134 1e-25 seq326 122 7e-22 seq2524 116 3e-20 seq1863 116 3e-20 seq332 116 3e-20 seq5215 100 2e-15 seq72 100 2e-15 seq21 93.3 3e-13 seq117 91.5 1e-12 seq95 86.0 5e-11 >seq282 Length=46907 Score = 297 bits (328), Expect = 2e-74 Identities = 397/548 (72%), Gaps = 8/548 (1%) Strand=Plus/Plus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 ||||| || || ||||| || || || || ||||||||||| || | || |||||||| Sbjct 11257 GCTATTGGAATTGATTTGGGTACTACGTACAGTTGTGTTGGCGTGTTCCAGCATGGTAAA 11316 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 ||||||||||||||||| |||||||| || | || || ||| ||||||| ||||||| Sbjct 11317 GTTGAAATTATTGCCAACGATCAAGGGAATCGTACCACGCCAAGTTATGTTGCTTTCACC 11376 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || |||| | |||| ||||| |||||| |||||| | |||||| ||| Sbjct 11377 GATACCGAACGACTGATTGGAGATGCGGCAAAAAATCAAGTTGCGTTGAATCCTCATAAT 11436 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || |||||||||| || || | || || | | ||| ||||| | | || ||| | Sbjct 11437 ACAGTTTTTGATGCGAAGCGACTCATCGGTCGTCGATTTGATGATGCTGCGGTGCAGTCT 11496 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGA---AAACCTTATATTGAA 550288 |||||||| |||||||| ||| ||||| | || | |||| |||||| | ||| || Sbjct 11497 GATATGAAACATTGGCCATTCAAAATTATCAACG---ATGGATCGAAACCTAAAATTCAA 11553 Query 550289 G-CTACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTT 550347 | | | | | |||| || |||| |||||||| |||| ||||||| || Sbjct 11554 GTCGAAT-ACAAAGGCGAGTCGAAGTCATTTACACCAGAAGAAATCAGTGCTATGGTGTT 11612 Query 550348 AATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAAT 550407 | |||| ||||| |||| ||| |||| | | || || |||| |||||| ||||| Sbjct 11613 AGTGAAGATGAAGGAAACTGCCGAAGCTTATTTGGGAAAAACTGTTAAGGATGCCGTAAT 11672 Query 550408 AACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTAT 550467 ||||| || ||||||||||| || || || ||||| || || ||||| |||||| || Sbjct 11673 TACTGTTCCGGCATATTTTAACGATTCTCAGCGTCAGGCGACCAAAGACGCTGGAACGAT 11732 Query 550468 TGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 | |||| | |||||| | ||||| ||||| ||||| || || |||||| |||| ||||| Sbjct 11733 TTCTGGTTTGAATGTTTTGCGTATCATCAACGAACCAACAGCGGCTGCAATTGCTTATGG 11792 Query 550528 ACTTGATA 550535 |||||||| Sbjct 11793 ACTTGATA 11800 Score = 87.8 bits (96), Expect = 1e-11 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566 || || || |||||||| ||||| || || ||||||||||||||||| || ||||||||| Sbjct 12828 GGAATCCCACCTGCTCCACGTGGTGTTCCACAAATTGAAGTTACTTTTGACATCGATGCC 12887 Query 552567 AATGGAATTTTGAATGTGACTGC 552589 || || |||||||| || |||| Sbjct 12888 AACGGCATTTTGAACGTTTCTGC 12910 >seq69 Length=193012 Score = 134 bits (148), Expect = 1e-25 Identities = 139/182 (76%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 550322 CCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTT 550381 || ||| |||||||| | |||||||| ||||||||||| ||| ||| |||| | | Sbjct 143803 CCCGAAGAAATTTCAGCGATGGTTTTGTTGAAAATGAAAGAAATTGCCGAGGCTTATTTG 143744 Query 550382 GGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGT 550441 || ||||||| | |||| || | || || ||||| ||||| || || |||||||| Sbjct 143743 GGCAAAGAAGTGAAAAATGCCGTCGTCACGGTTCCAGCTTATTTCAACGATGCACAACGT 143684 Query 550442 CAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAA 550501 |||||||| |||||||| || |||||||| ||||||||| |||| || ||||| ||| Sbjct 143683 CAAGCTACCAAAGATGCAGGCACCATTGCTGGTCTTAATGTTGTTCGAATCATCAACGAA 143624 Query 550502 CC 550503 || Sbjct 143623 CC 143622 Score = 109 bits (120), Expect = 4e-18 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 552432 GTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGT 552491 ||||| |||||| |||| ||||| ||| || | | || ||||| ||| ||| ||||| Sbjct 142660 GTTACTATTCAAGTTTTCGAAGGCGAACGACCAATGACCAAAGACAATCATCTTCTTGGG 142601 Query 552492 ACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACT 552551 | ||| || | || || ||||| ||||| ||||| ||||| |||||||||||||| Sbjct 142600 AAATTTGATCTGACCGGCATACCTCCGGCTCCGCGTGGGGTACCACAAATTGAAGTTACA 142541 Query 552552 TTCGATATCGATGCCAATGGAATTTTGAATGTGACTGC 552589 ||||||||||| | || || |||||| | || || || Sbjct 142540 TTCGATATCGACGTGAACGGCATTTTGCACGTCACCGC 142503 >seq326 Length=30629 Score = 122 bits (134), Expect = 7e-22 Identities = 113/141 (80%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || |||||||| || | ||||||||| || |||||||||||||||||||||||||| | Sbjct 17678 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 17737 Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453 ||||| ||| |||||||||| || ||| ||| | || | ||||| || ||||| Sbjct 17738 TTTACATTCTCTATTGTATCAGATGGTTCTAC-TTCCAAGGTGATCGTTTTGCCGGTAAG 17796 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 ||| ||||||||||||||||| Sbjct 17797 AGTCTTAACGAAAATTTGCAT 17817 Score = 113 bits (124), Expect = 4e-19 Identities = 111/141 (79%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || |||||||| || | ||||||||| || |||||||||||||||||||||||||| | Sbjct 18523 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 18582 Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453 ||||| ||| |||||||||| || ||| ||| | || | ||||| || || || Sbjct 18583 TTTACATTCTCTATTGTATCAGATGGTTCTAC-TTCCAATGTGATGGTTTTGCCGGTGAG 18641 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 ||| ||||| ||||||||||| Sbjct 18642 AGTCTTAACAAAAATTTGCAT 18662 Score = 98.7 bits (108), Expect = 8e-15 Identities = 108/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || |||||||| | | ||| ||||| || ||||||||||| ||||| || ||||| | Sbjct 17958 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 18017 Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453 || || ||||||||||||| || ||| ||| | ||| | ||||| |||||||| Sbjct 18018 TTCACATTTTCAATTGTATCAGATGGTTCTAC-TTCCAAAGTTATTGTTTTTCCAGTAAG 18076 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 || ||||||||||||||||| Sbjct 18077 GGTCTTAACGAAAATTTGCAT 18097 Score = 98.7 bits (108), Expect = 8e-15 Identities = 108/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || |||||||| | | ||| ||||| || ||||||||||| ||||| || ||||| | Sbjct 18803 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 18862 Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453 || || ||||||||||||| || ||| ||| | ||| | ||||| |||||||| Sbjct 18863 TTCACATTTTCAATTGTATCAGATGGTTCTAC-TTCCAAAGTTATTGTTTTTCCAGTAAG 18921 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 || ||||||||||||||||| Sbjct 18922 GGTCTTAACGAAAATTTGCAT 18942 Score = 91.5 bits (100), Expect = 1e-12 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391 || || |||||||| | | ||| ||||| || ||||||||||| ||||| || ||||| Sbjct 18237 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTC 18296 Query 563392 TGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGT 563450 |||||| ||| |||||||||| || ||| ||| | || | ||||| || || Sbjct 18297 CCTTTTACATTCTCTATTGTATCAGATGGTTCTAC-TTCCAAGGTGATCGTTTTGCCGGT 18355 Query 563451 AAGAGTTTTAACGAAAATTTGCAT 563474 |||||| ||||| ||||| ||||| Sbjct 18356 AAGAGTCTTAACAAAAATCTGCAT 18379 >seq2524 Length=468 Score = 116 bits (128), Expect = 3e-20 Identities = 112/141 (79%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || |||||||| || | ||||||||| || |||||||||||||||||||||||||| | Sbjct 233 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 292 Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453 ||||| ||| |||||||||| || ||| ||| | || | ||||| || ||||| Sbjct 293 TTTACATTCTCTATTGTATCAGATGGTTCTAC-TTCCAAGGTGATCGTTTTGCCGGTAAG 351 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 ||| ||||| ||||||||||| Sbjct 352 AGTCTTAACAAAAATTTGCAT 372 >seq1863 Length=625 Score = 116 bits (128), Expect = 3e-20 Identities = 112/141 (79%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || |||||||| || | ||||||||| || |||||||||||||||||||||||||| | Sbjct 429 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 370 Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453 ||||| ||| |||||||||| || ||| ||| | || | ||||| || ||||| Sbjct 369 TTTACATTCTCTATTGTATCAGATGGTTCTAC-TTCTAAGGTGATCGTTTTGCCGGTAAG 311 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 ||| ||||| ||||||||||| Sbjct 310 AGTCTTAACAAAAATTTGCAT 290 Score = 113 bits (124), Expect = 4e-19 Identities = 111/141 (79%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || |||||||| || | ||||||||| || |||||||||||||||||||||||||| | Sbjct 146 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 87 Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453 ||||| || |||||||||| || ||| ||| | || | ||||| || ||||| Sbjct 86 TTTACATTTTCTATTGTATCAGATGGCTCTAC-TTCCAAGGTGATCGTTTTGCCGGTAAG 28 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 ||| ||||| ||||||||||| Sbjct 27 AGTCTTAACAAAAATTTGCAT 7 >seq332 Length=28044 Score = 116 bits (128), Expect = 3e-20 Identities = 112/141 (79%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || |||||||| || | ||||||||| || |||||||||||||||||||||||||| | Sbjct 197 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 256 Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453 ||||| ||| |||||||||| || ||| ||| | || | ||||| || ||||| Sbjct 257 TTTACATTCTCTATTGTATCAGATGGTTCTAC-TTCTAAGGTGATCGTTTTGCCGGTAAG 315 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 ||| ||||| ||||||||||| Sbjct 316 AGTCTTAACAAAAATTTGCAT 336 Score = 116 bits (128), Expect = 3e-20 Identities = 112/141 (79%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || |||||||| || | ||||||||| || |||||||||||||||||||||||||| | Sbjct 480 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 539 Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453 ||||| ||| |||||||||| || ||| ||| | || | ||||| || ||||| Sbjct 540 TTTACATTCTCTATTGTATCAGATGGTTCTAC-TTCCAAGGTGATCGTTTTGCCGGTAAG 598 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 ||| ||||| ||||||||||| Sbjct 599 AGTCTTAACAAAAATTTGCAT 619 Score = 107 bits (118), Expect = 2e-17 Identities = 110/141 (78%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || |||||||| || | ||||||||| || ||||||||||| ||||| || ||||| | Sbjct 26940 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 26999 Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453 ||||| ||| |||||||||| || ||| ||| | || | ||||| || ||||| Sbjct 27000 TTTACATTCTCTATTGTATCAGATGGTTCTAC-TTCTAAGGTGATCGTTTTGCCGGTAAG 27058 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 ||| ||||||||||||||||| Sbjct 27059 AGTCTTAACGAAAATTTGCAT 27079 Score = 105 bits (116), Expect = 5e-17 Identities = 113/147 (77%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 563329 TGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATT 563388 || || || |||||||| | | ||| ||||| ||||||||||| ||||||||||| ||| Sbjct 27772 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGTATT 27831 Query 563389 TTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACC 563447 ||| ||| || || |||||||||| || ||| ||| | || | ||||| || Sbjct 27832 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTAC-TTCCAACGTGATGGTTTTCCC 27890 Query 563448 AGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||||||||| ||||| ||||||||||| Sbjct 27891 AGTAAGAGTCTTAACAAAAATTTGCAT 27917 Score = 104 bits (114), Expect = 2e-16 Identities = 109/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || |||||||| | | ||||||||| || |||||||| |||||||| || ||||| | Sbjct 26375 CCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 26434 Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453 ||||| ||| |||||||||| || ||| ||| | || | ||||| || ||||| Sbjct 26435 TTTACATTCTCTATTGTATCAGATGGTTCTAC-TTCTAAGGTGATCGTTTTGCCGGTAAG 26493 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 ||| ||||||||||||||||| Sbjct 26494 AGTCTTAACGAAAATTTGCAT 26514 Score = 100 bits (110), Expect = 2e-15 Identities = 110/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391 || || |||||||| | | ||||||||| || ||||||||||| ||||| || ||||| Sbjct 26654 TTACCAGCAAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTC 26713 Query 563392 TGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGT 563450 |||||| ||| |||||||||| || ||| ||| | || | ||||| || || Sbjct 26714 CCTTTTACATTCTCTATTGTATCAGATGGTTCTAC-TTCCAAGGTGATCGTTTTGCCGGT 26772 Query 563451 AAGAGTTTTAACGAAAATTTGCAT 563474 |||||| ||||| ||||||||||| Sbjct 26773 AAGAGTCTTAACAAAAATTTGCAT 26796 Score = 96.9 bits (106), Expect = 3e-14 Identities = 111/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 563329 TGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATT 563388 || || || |||||||| | | ||| ||||| || ||||||||||| ||||| || ||| Sbjct 27493 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATT 27552 Query 563389 TTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACC 563447 || |||||| ||| |||||||||| || ||| ||| | || | ||||| || Sbjct 27553 TTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTAC-TTCCAAGGTGATCGTTTTGCC 27611 Query 563448 AGTAAGAGTTTTAACGAAAATTTGCAT 563474 |||||||| ||||| ||||||||||| Sbjct 27612 GGTAAGAGTCTTAACAAAAATTTGCAT 27638 Score = 91.5 bits (100), Expect = 1e-12 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391 || || |||||||| | | || ||||| || ||||||||||| ||||| || ||||| Sbjct 27217 TTACCAGCAAAAATCAAACGCTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTC 27276 Query 563392 TGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGT 563450 |||||| ||| |||||||||| || ||| ||| | || | ||||| || || Sbjct 27277 CCTTTTACATTCTCTATTGTATCAGATGGTTCTAC-TTCCAAGGTGATCGTTTTGCCGGT 27335 Query 563451 AAGAGTTTTAACGAAAATTTGCAT 563474 |||||| ||||| ||||||||||| Sbjct 27336 AAGAGTCTTAACAAAAATTTGCAT 27359 >seq5215 Length=241 Score = 100 bits (110), Expect = 2e-15 Identities = 110/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391 || || |||||||| | | ||| ||||| ||||||||||| ||||||||||| |||||| Sbjct 93 TTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGTATTTTT 152 Query 563392 TGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGT 563450 ||| || || |||||||||| || ||| ||| | || | ||||| || || Sbjct 153 CCTTTCACATTTTCTATTGTATCAGATGGCTCTAC-TTCCAAGGTGATCGTTTTGCCGGT 211 Query 563451 AAGAGTTTTAACGAAAATTTGCAT 563474 |||||| ||||| ||||||||||| Sbjct 212 AAGAGTCTTAACAAAAATTTGCAT 235 >seq72 Length=186561 Score = 100 bits (110), Expect = 2e-15 Identities = 122/164 (74%), Gaps = 2/164 (1%) Strand=Plus/Minus Query 370652 TGCAACTGATGATGAAATTAAAAAAGCATACAAAAAACTAGCAATGAAATATCATCCTGA 370711 ||| || || |||||||| |||||||| || || | || |||||||||||||||| Sbjct 173316 TGCCACGGAAGATGAAATCAAAAAAGCTTATCGGAAGATGGCGTTGAAATATCATCCTGA 173257 Query 370712 TAGAAACAAAAGTCCTGATGCTGAAGAAAAGTTTaaaaaaaTTAGCA-ATGCACATGGTA 370770 | |||||||| ||||| || ||| ||||||||| | ||| ||| | ||| | | | Sbjct 173256 CAAGAACAAAAGCCCTGACGCAGAAAGCAAGTTTAAAGAGATT-GCAGAAGCATACGATG 173198 Query 370771 TTCTTTCTGATCCTGAAAAGAAACAAACTTATGATAGATTTGGT 370814 |||| |||| || |||||||| ||| || |||| ||||||| Sbjct 173197 TTCTGAGTGATGCTAAAAAGAAAGAAATATACGATAAATTTGGT 173154 >seq21 Length=314379 Score = 93.3 bits (102), Expect = 3e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 367540 GAACGTATTGGAAGATGGATTGACGTAAAAAATGAATATAAAACAATGGATACTAATTTC 367599 ||||| |||| ||||||| || | |||||||| |||||||| | || | | |||| Sbjct 175245 GAACGGCTTGGTCGATGGATAGATTTTAAAAATGACTATAAAACTTTATATCCAAGTTTC 175186 Query 367600 ATGGAATCTGTTATTTGGGCATTTAAACAATTATACGAACGCGGTATGATTTTTGAAGGT 367659 ||||||||||| |||| ||| ||||| | || | ||| | | | |||| Sbjct 175185 ATGGAATCTGTATGGTGGGTATTCAAACAGCTGTATAACAAAGGTCTTGTCTACAGAGGT 175126 Query 367660 TATAAAGTAATGCCATATTCAACTGGTTGTAATACTGCTTTGTCACATTTTGAAGCCAAA 367719 ||||| ||||||| ||| |||| ||| ||| | |||||| |||||||| | | Sbjct 175125 GTAAAAGTGATGCCATTTTCTACTGCTTGCGGGACTCCATTGTCAAATTTTGAATCTGGA 175066 Query 367720 CAAAATTATCGAGAAGTAGTTGATCC 367745 |||||||| |||||| ||||||| Sbjct 175065 CAAAATTACAAAGAAGTCATTGATCC 175040 >seq117 Length=123509 Score = 91.5 bits (100), Expect = 1e-12 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391 || || ||||| || | || |||||||||||| ||||| ||||| |||||||||||||| Sbjct 9014 TTACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTA 9073 Query 563392 TGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGT 563450 |||||| ||||| ||||||| || ||| ||| | || | ||||| ||||| Sbjct 9074 CTTTTTACATTTTCAATCGTATCAGATGGCTCTAC-TTCCAATGTGATTGTTTTTCCAGT 9132 Query 563451 AAGAGTTTTAACGAAAATTTGCAT 563474 | ||||| || ||||| ||||| Sbjct 9133 TAATGTTTTCACAAAAATCTGCAT 9156 Score = 91.5 bits (100), Expect = 1e-12 Identities = 109/146 (75%), Gaps = 4/146 (3%) Strand=Plus/Plus Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391 || || ||||| || | ||||||||||||||||||||| ||||| ||||| |||||||| Sbjct 10269 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 10328 Query 563392 TGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA--TTCGAGAGTAACAGTTTTACCAG 563449 ||| || || || || || || || || ||| || || | |||||| |||| Sbjct 10329 CTTTTAACATTTTCGATGGTGTC--TGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAG 10386 Query 563450 TAAGAGTTTTAACGAAAATTTGCATA 563475 |||| || || ||||| || |||||| Sbjct 10387 TAAGTGTCTTCACGAATATCTGCATA 10412 Score = 89.7 bits (98), Expect = 4e-12 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || ||||| || | || |||||||||||| ||||| ||||| |||||||||||||| | Sbjct 8730 CCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTACTT 8789 Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453 ||||| ||||| ||||||| || ||| ||| | || | ||||| ||||| | Sbjct 8790 TTTACATTTTCAATCGTATCAGATGGCTCTAC-TTCCAATGTGATTGTTTTTCCAGTTAA 8848 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 ||||| || ||||| ||||| Sbjct 8849 TGTTTTCACAAAAATCTGCAT 8869 >seq95 Length=149630 Score = 86.0 bits (94), Expect = 5e-11 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566 ||||| ||||| || ||||||||||| || ||||| ||||||||||| ||||||||||| Sbjct 15782 GGTATACCTCCGGCCCCTCGTGGAGTTCCACAAATAGAAGTTACTTTTGATATCGATGCA 15723 Query 552567 AATGGAATTTTGAATGTGACTGCTTGTGAT 552596 ||||| || | |||| | |||| | ||| Sbjct 15722 AATGGTATAGTTCATGTCAGTGCTCGAGAT 15693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028981284280990