Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24]
5,951 sequences; 50,853,738 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq332 140 3e-28
seq5215 136 3e-27
seq326 136 3e-27
seq117 127 2e-24
seq2524 125 6e-24
seq1863 125 6e-24
>seq332
Length=28044
Score = 140 bits (154), Expect = 3e-28
Identities = 131/166 (79%), Gaps = 3/166 (2%)
Strand=Plus/Plus
Query 101323 TTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAAT 101382
|| |||||| ||||| |||| ||| ||||||||||| ||||| || |||||||| |||||
Sbjct 1439 TTACTTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAAT 1498
Query 101383 TTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCC 101442
||| || ||| |||| || ||||| || | ||||||||| ||||| | ||||| ||
Sbjct 1499 TTTACCCTTCACATTTTCAACTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCC 1558
Query 101443 GGTTAAAGTTTTTACAAATATCTGCATGGTTACGCGAAGATTTGTA 101488
||| | |||||| ||||||||||||| || ||||| || || ||
Sbjct 1559 GGTCAGAGTTTTGACAAATATCTGCA---TTTCGCGATGAATTCTA 1601
Score = 140 bits (154), Expect = 3e-28
Identities = 131/166 (79%), Gaps = 3/166 (2%)
Strand=Plus/Plus
Query 101323 TTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAAT 101382
|| |||||| ||||| |||| ||| ||||||||||| ||||| || |||||||| |||||
Sbjct 17796 TTACTTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAAT 17855
Query 101383 TTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCC 101442
||| || ||| |||| || ||||| || | ||||||||| ||||| | ||||| ||
Sbjct 17856 TTTACCCTTCACATTTTCAACTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCC 17915
Query 101443 GGTTAAAGTTTTTACAAATATCTGCATGGTTACGCGAAGATTTGTA 101488
||| | |||||| ||||||||||||| || ||||| || || ||
Sbjct 17916 GGTCAGAGTTTTGACAAATATCTGCA---TTTCGCGATGAATTCTA 17958
Score = 136 bits (150), Expect = 3e-27
Identities = 120/150 (80%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379
||||| |||||| ||||| ||||||||||||||||| || ||||| ||||| ||||| ||
Sbjct 27210 CAATTACTTACCAGCAAAAATCAAACGCTGTTGATCCGGTGGAATTCCTTCCTTATCCTG 27269
Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439
||||| ||||||| | |||| || ||||| | ||| ||||| | |||| ||||||
Sbjct 27270 TATTTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTT 27329
Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|||||| | ||| || ||||| || |||||
Sbjct 27330 GCCGGTAAGAGTCTTAACAAAAATTTGCAT 27359
Score = 129 bits (142), Expect = 5e-25
Identities = 118/149 (79%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380
|| |||||||| ||||| |||||||| |||||||| || ||||| ||||| ||||| ||
Sbjct 27490 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGT 27549
Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440
||||| ||||||| | |||| || ||||| | ||| ||||| | |||| |||||||
Sbjct 27550 ATTTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTG 27609
Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469
||||| | ||| || ||||| || |||||
Sbjct 27610 CCGGTAAGAGTCTTAACAAAAATTTGCAT 27638
Score = 127 bits (140), Expect = 2e-24
Identities = 118/150 (79%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379
||||| |||||| ||||| |||||||| || ||||| || ||||| ||||| ||||| ||
Sbjct 26647 CAATTACTTACCAGCAAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCCTTATCCTG 26706
Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439
||||| ||||||| | |||| || ||||| | ||| ||||| | |||| ||||||
Sbjct 26707 TATTTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTT 26766
Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|||||| | ||| || ||||| || |||||
Sbjct 26767 GCCGGTAAGAGTCTTAACAAAAATTTGCAT 26796
Score = 125 bits (138), Expect = 6e-24
Identities = 113/142 (80%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387
|||| ||||| |||| ||| || ||||| || ||||| ||||||||||||||||||||
Sbjct 195 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGC 254
Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447
||||||| | |||| || ||||| | ||| ||||| | |||| |||||||||||| |
Sbjct 255 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAA 314
Query 101448 AAGTTTTTACAAATATCTGCAT 101469
||| || ||||| || |||||
Sbjct 315 GAGTCTTAACAAAAATTTGCAT 336
Score = 125 bits (138), Expect = 6e-24
Identities = 113/142 (80%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387
|||| ||||| |||| ||| || ||||| || ||||| ||||||||||||||||||||
Sbjct 478 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGC 537
Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447
||||||| | |||| || ||||| | ||| ||||| | |||| |||||||||||| |
Sbjct 538 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAA 597
Query 101448 AAGTTTTTACAAATATCTGCAT 101469
||| || ||||| || |||||
Sbjct 598 GAGTCTTAACAAAAATTTGCAT 619
Score = 125 bits (138), Expect = 6e-24
Identities = 117/149 (79%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380
|| |||||||| ||||| |||||||| |||||||| || ||||| || |||||||||||
Sbjct 27769 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGT 27828
Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440
|||||| ||| ||| |||||| || ||||| | ||| ||||| | |||| |||||
Sbjct 27829 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAACGTGATGGTTTTC 27888
Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| || | ||| || ||||| || |||||
Sbjct 27889 CCAGTAAGAGTCTTAACAAAAATTTGCAT 27917
Score = 122 bits (134), Expect = 7e-23
Identities = 114/145 (79%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 101325 GCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTT 101384
|| |||| ||||| || | ||||||||||| || || ||||||||||| |||||||| |
Sbjct 1109 GCATACCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCT 1168
Query 101385 TTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGG 101444
| ||||||| |||| | || || |||| || |||||||| || | |||||| || |
Sbjct 1169 TGCTTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTG 1228
Query 101445 TTAAAGTTTTTACAAATATCTGCAT 101469
| || ||||| ||||||||||||||
Sbjct 1229 TCAACGTTTTCACAAATATCTGCAT 1253
Score = 113 bits (124), Expect = 4e-20
Identities = 110/142 (77%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387
|||| ||||| |||||||| || ||||| || ||||| || |||||||| || |||||
Sbjct 26373 TACCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGC 26432
Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447
||||||| | |||| || ||||| | ||| ||||| | |||| |||||||||||| |
Sbjct 26433 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAA 26492
Query 101448 AAGTTTTTACAAATATCTGCAT 101469
||| || || || || |||||
Sbjct 26493 GAGTCTTAACGAAAATTTGCAT 26514
Score = 107 bits (118), Expect = 2e-18
Identities = 109/142 (77%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387
|||| ||||| |||| ||| || ||||| || ||||| ||||| ||||| || |||||
Sbjct 26938 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGC 26997
Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447
||||||| | |||| || ||||| | ||| ||||| | |||| |||||||||||| |
Sbjct 26998 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAA 27057
Query 101448 AAGTTTTTACAAATATCTGCAT 101469
||| || || || || |||||
Sbjct 27058 GAGTCTTAACGAAAATTTGCAT 27079
>seq5215
Length=241
Score = 136 bits (150), Expect = 3e-27
Identities = 120/150 (80%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379
||||| |||||| ||||| |||||||| |||||||| || ||||| || |||||||||||
Sbjct 86 CAATTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTG 145
Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439
|||||| ||| ||| |||||| || ||||| | || ||||| | |||| ||||||
Sbjct 146 TATTTTTCCTTTCACATTTTCTATTGTATCAGATGGCTCTACTTCCAAGGTGATCGTTTT 205
Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|||||| | ||| || ||||| || |||||
Sbjct 206 GCCGGTAAGAGTCTTAACAAAAATTTGCAT 235
>seq326
Length=30629
Score = 136 bits (150), Expect = 3e-27
Identities = 120/150 (80%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379
||||| |||||| ||||| |||||||| |||||||| || ||||| ||||| ||||| ||
Sbjct 18230 CAATTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTG 18289
Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439
||||| ||||||| | |||| || ||||| | ||| ||||| | |||| ||||||
Sbjct 18290 TATTTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTT 18349
Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|||||| | ||| || ||||| ||||||||
Sbjct 18350 GCCGGTAAGAGTCTTAACAAAAATCTGCAT 18379
Score = 134 bits (148), Expect = 1e-26
Identities = 118/147 (80%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 101323 TTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAAT 101382
|| |||||| ||||| |||| ||| ||||||||||| ||||| || |||||||| |||||
Sbjct 19762 TTACTTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAAT 19821
Query 101383 TTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCC 101442
||| || ||| |||| | |||||||| | ||||||||| ||||| | ||||| ||
Sbjct 19822 TTTACCCTTCACATTTTCAATTGTGTCAGAGGGTTCCACTTCCAGAGTAATGGTTTTCCC 19881
Query 101443 GGTTAAAGTTTTTACAAATATCTGCAT 101469
|| | |||||| ||||||||||||||
Sbjct 19882 AGTCAGAGTTTTCACAAATATCTGCAT 19908
Score = 122 bits (134), Expect = 7e-23
Identities = 112/142 (79%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387
|||| ||||| ||||||||||||||||| || ||||| || || ||||||||||| ||
Sbjct 17393 TACCAGCAAAAATCAAACGCTGTTGATCTGGAGGAATTCCCTCCTTATCTTGAATCTTCC 17452
Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447
||| ||| | || ||||| ||||| | ||||||||| | |||| ||||| || ||||
Sbjct 17453 CTTTCACATTCTCAACAGTATCAGATGGTTCCACTTCCAACGTGATGGTTTTCCCAGTTA 17512
Query 101448 AAGTTTTTACAAATATCTGCAT 101469
|| || ||||| ||||||||
Sbjct 17513 GGGTCTTAACAAAAATCTGCAT 17534
Score = 122 bits (134), Expect = 7e-23
Identities = 112/142 (79%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387
|||| ||||| |||| ||| || ||||| || ||||| ||||||||||||||||||||
Sbjct 17676 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGC 17735
Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447
||||||| | |||| || ||||| | ||| ||||| | |||| |||||||||||| |
Sbjct 17736 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAA 17795
Query 101448 AAGTTTTTACAAATATCTGCAT 101469
||| || || || || |||||
Sbjct 17796 GAGTCTTAACGAAAATTTGCAT 17817
Score = 122 bits (134), Expect = 7e-23
Identities = 112/142 (79%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387
|||| ||||| |||| ||| || ||||| || ||||| ||||||||||||||||||||
Sbjct 18521 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGC 18580
Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447
||||||| | |||| || ||||| | ||| ||||| | |||| ||||||||||| |
Sbjct 18581 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAATGTGATGGTTTTGCCGGTGA 18640
Query 101448 AAGTTTTTACAAATATCTGCAT 101469
||| || ||||| || |||||
Sbjct 18641 GAGTCTTAACAAAAATTTGCAT 18662
Score = 122 bits (134), Expect = 7e-23
Identities = 114/145 (79%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 101325 GCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTT 101384
|| |||| ||||| || | ||||||||||| || || ||||||||||| |||||||| |
Sbjct 19432 GCATACCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCT 19491
Query 101385 TTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGG 101444
| ||||||| |||| | || || |||| || |||||||| || | |||||| || |
Sbjct 19492 TGCTTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTG 19551
Query 101445 TTAAAGTTTTTACAAATATCTGCAT 101469
| || ||||| ||||||||||||||
Sbjct 19552 TCAACGTTTTCACAAATATCTGCAT 19576
>seq117
Length=123509
Score = 127 bits (140), Expect = 2e-24
Identities = 114/143 (80%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
||||| ||||||||||| || || ||||| || ||||||||||| ||||||||||||||
Sbjct 9014 TTACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTA 9073
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
||||||| |||| | || ||||| | || ||||| | |||| ||||| || |||
Sbjct 9074 CTTTTTACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 9133
Query 101447 AAAGTTTTTACAAATATCTGCAT 101469
|| ||||| ||||| ||||||||
Sbjct 9134 AATGTTTTCACAAAAATCTGCAT 9156
Score = 125 bits (138), Expect = 6e-24
Identities = 113/142 (80%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387
|||| ||||||||||| || || ||||| || ||||||||||| ||||||||||||||
Sbjct 8728 TACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTAC 8787
Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447
||||||| |||| | || ||||| | || ||||| | |||| ||||| || ||||
Sbjct 8788 TTTTTACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTA 8847
Query 101448 AAGTTTTTACAAATATCTGCAT 101469
| ||||| ||||| ||||||||
Sbjct 8848 ATGTTTTCACAAAAATCTGCAT 8869
Score = 118 bits (130), Expect = 8e-22
Identities = 112/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
||||| ||||||||||| || || ||||| || ||||||||||| ||||||||||||||
Sbjct 9301 TTACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTA 9360
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
||| ||| |||| | || || || | || ||||| | |||| ||||| || |||
Sbjct 9361 CTTTTCACATTTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 9420
Query 101447 AAAGTTTTTACAAATATCTGCAT 101469
|| ||||| ||||| ||||||||
Sbjct 9421 AATGTTTTCACAAAAATCTGCAT 9443
Score = 116 bits (128), Expect = 3e-21
Identities = 111/142 (78%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387
|||| ||||||||||| || || ||||| || ||||||||||| ||||||||||||||
Sbjct 9588 TACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTAC 9647
Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447
||| ||| |||| | || || || | || ||||| | |||| ||||| || ||||
Sbjct 9648 TTTTCACATTTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTA 9707
Query 101448 AAGTTTTTACAAATATCTGCAT 101469
| ||||| ||||| ||||||||
Sbjct 9708 ATGTTTTCACAAAAATCTGCAT 9729
Score = 100 bits (110), Expect = 2e-16
Identities = 108/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
||||||||||| || || | || ||||| || ||||||||||| ||||| ||||||||
Sbjct 10269 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 10328
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
||| ||| |||| | ||||| || | ||| ||||| || || | ||||| || ||
Sbjct 10329 CTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 10388
Query 101447 AAAGTTTTTACAAATATCTGCAT 101469
| || || || |||||||||||
Sbjct 10389 AGTGTCTTCACGAATATCTGCAT 10411
>seq2524
Length=468
Score = 125 bits (138), Expect = 6e-24
Identities = 113/142 (80%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387
|||| ||||| |||| ||| || ||||| || ||||| ||||||||||||||||||||
Sbjct 231 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGC 290
Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447
||||||| | |||| || ||||| | ||| ||||| | |||| |||||||||||| |
Sbjct 291 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAA 350
Query 101448 AAGTTTTTACAAATATCTGCAT 101469
||| || ||||| || |||||
Sbjct 351 GAGTCTTAACAAAAATTTGCAT 372
>seq1863
Length=625
Score = 125 bits (138), Expect = 6e-24
Identities = 113/142 (80%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387
|||| ||||| |||| ||| || ||||| || ||||| ||||||||||||||||||||
Sbjct 148 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGC 89
Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447
||||||| |||||| || ||||| | || ||||| | |||| |||||||||||| |
Sbjct 88 CTTTTACATTTTCTATTGTATCAGATGGCTCTACTTCCAAGGTGATCGTTTTGCCGGTAA 29
Query 101448 AAGTTTTTACAAATATCTGCAT 101469
||| || ||||| || |||||
Sbjct 28 GAGTCTTAACAAAAATTTGCAT 7
Score = 125 bits (138), Expect = 6e-24
Identities = 113/142 (80%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387
|||| ||||| |||| ||| || ||||| || ||||| ||||||||||||||||||||
Sbjct 431 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGC 372
Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447
||||||| | |||| || ||||| | ||| ||||| | |||| |||||||||||| |
Sbjct 371 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAA 312
Query 101448 AAGTTTTTACAAATATCTGCAT 101469
||| || ||||| || |||||
Sbjct 311 GAGTCTTAACAAAAATTTGCAT 290
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396249658794507
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