Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24] 5,951 sequences; 50,853,738 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq332 140 3e-28 seq5215 136 3e-27 seq326 136 3e-27 seq117 127 2e-24 seq2524 125 6e-24 seq1863 125 6e-24 >seq332 Length=28044 Score = 140 bits (154), Expect = 3e-28 Identities = 131/166 (79%), Gaps = 3/166 (2%) Strand=Plus/Plus Query 101323 TTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAAT 101382 || |||||| ||||| |||| ||| ||||||||||| ||||| || |||||||| ||||| Sbjct 1439 TTACTTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAAT 1498 Query 101383 TTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCC 101442 ||| || ||| |||| || ||||| || | ||||||||| ||||| | ||||| || Sbjct 1499 TTTACCCTTCACATTTTCAACTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCC 1558 Query 101443 GGTTAAAGTTTTTACAAATATCTGCATGGTTACGCGAAGATTTGTA 101488 ||| | |||||| ||||||||||||| || ||||| || || || Sbjct 1559 GGTCAGAGTTTTGACAAATATCTGCA---TTTCGCGATGAATTCTA 1601 Score = 140 bits (154), Expect = 3e-28 Identities = 131/166 (79%), Gaps = 3/166 (2%) Strand=Plus/Plus Query 101323 TTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAAT 101382 || |||||| ||||| |||| ||| ||||||||||| ||||| || |||||||| ||||| Sbjct 17796 TTACTTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAAT 17855 Query 101383 TTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCC 101442 ||| || ||| |||| || ||||| || | ||||||||| ||||| | ||||| || Sbjct 17856 TTTACCCTTCACATTTTCAACTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCC 17915 Query 101443 GGTTAAAGTTTTTACAAATATCTGCATGGTTACGCGAAGATTTGTA 101488 ||| | |||||| ||||||||||||| || ||||| || || || Sbjct 17916 GGTCAGAGTTTTGACAAATATCTGCA---TTTCGCGATGAATTCTA 17958 Score = 136 bits (150), Expect = 3e-27 Identities = 120/150 (80%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 ||||| |||||| ||||| ||||||||||||||||| || ||||| ||||| ||||| || Sbjct 27210 CAATTACTTACCAGCAAAAATCAAACGCTGTTGATCCGGTGGAATTCCTTCCTTATCCTG 27269 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 ||||| ||||||| | |||| || ||||| | ||| ||||| | |||| |||||| Sbjct 27270 TATTTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTT 27329 Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||| | ||| || ||||| || ||||| Sbjct 27330 GCCGGTAAGAGTCTTAACAAAAATTTGCAT 27359 Score = 129 bits (142), Expect = 5e-25 Identities = 118/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 || |||||||| ||||| |||||||| |||||||| || ||||| ||||| ||||| || Sbjct 27490 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGT 27549 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 ||||| ||||||| | |||| || ||||| | ||| ||||| | |||| ||||||| Sbjct 27550 ATTTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTG 27609 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| | ||| || ||||| || ||||| Sbjct 27610 CCGGTAAGAGTCTTAACAAAAATTTGCAT 27638 Score = 127 bits (140), Expect = 2e-24 Identities = 118/150 (79%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 ||||| |||||| ||||| |||||||| || ||||| || ||||| ||||| ||||| || Sbjct 26647 CAATTACTTACCAGCAAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCCTTATCCTG 26706 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 ||||| ||||||| | |||| || ||||| | ||| ||||| | |||| |||||| Sbjct 26707 TATTTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTT 26766 Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||| | ||| || ||||| || ||||| Sbjct 26767 GCCGGTAAGAGTCTTAACAAAAATTTGCAT 26796 Score = 125 bits (138), Expect = 6e-24 Identities = 113/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||| ||||| |||| ||| || ||||| || ||||| |||||||||||||||||||| Sbjct 195 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGC 254 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 ||||||| | |||| || ||||| | ||| ||||| | |||| |||||||||||| | Sbjct 255 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAA 314 Query 101448 AAGTTTTTACAAATATCTGCAT 101469 ||| || ||||| || ||||| Sbjct 315 GAGTCTTAACAAAAATTTGCAT 336 Score = 125 bits (138), Expect = 6e-24 Identities = 113/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||| ||||| |||| ||| || ||||| || ||||| |||||||||||||||||||| Sbjct 478 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGC 537 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 ||||||| | |||| || ||||| | ||| ||||| | |||| |||||||||||| | Sbjct 538 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAA 597 Query 101448 AAGTTTTTACAAATATCTGCAT 101469 ||| || ||||| || ||||| Sbjct 598 GAGTCTTAACAAAAATTTGCAT 619 Score = 125 bits (138), Expect = 6e-24 Identities = 117/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 || |||||||| ||||| |||||||| |||||||| || ||||| || ||||||||||| Sbjct 27769 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGT 27828 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 |||||| ||| ||| |||||| || ||||| | ||| ||||| | |||| ||||| Sbjct 27829 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAACGTGATGGTTTTC 27888 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | ||| || ||||| || ||||| Sbjct 27889 CCAGTAAGAGTCTTAACAAAAATTTGCAT 27917 Score = 122 bits (134), Expect = 7e-23 Identities = 114/145 (79%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 101325 GCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTT 101384 || |||| ||||| || | ||||||||||| || || ||||||||||| |||||||| | Sbjct 1109 GCATACCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCT 1168 Query 101385 TTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGG 101444 | ||||||| |||| | || || |||| || |||||||| || | |||||| || | Sbjct 1169 TGCTTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTG 1228 Query 101445 TTAAAGTTTTTACAAATATCTGCAT 101469 | || ||||| |||||||||||||| Sbjct 1229 TCAACGTTTTCACAAATATCTGCAT 1253 Score = 113 bits (124), Expect = 4e-20 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||| ||||| |||||||| || ||||| || ||||| || |||||||| || ||||| Sbjct 26373 TACCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGC 26432 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 ||||||| | |||| || ||||| | ||| ||||| | |||| |||||||||||| | Sbjct 26433 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAA 26492 Query 101448 AAGTTTTTACAAATATCTGCAT 101469 ||| || || || || ||||| Sbjct 26493 GAGTCTTAACGAAAATTTGCAT 26514 Score = 107 bits (118), Expect = 2e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||| ||||| |||| ||| || ||||| || ||||| ||||| ||||| || ||||| Sbjct 26938 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGC 26997 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 ||||||| | |||| || ||||| | ||| ||||| | |||| |||||||||||| | Sbjct 26998 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAA 27057 Query 101448 AAGTTTTTACAAATATCTGCAT 101469 ||| || || || || ||||| Sbjct 27058 GAGTCTTAACGAAAATTTGCAT 27079 >seq5215 Length=241 Score = 136 bits (150), Expect = 3e-27 Identities = 120/150 (80%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 ||||| |||||| ||||| |||||||| |||||||| || ||||| || ||||||||||| Sbjct 86 CAATTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTG 145 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 |||||| ||| ||| |||||| || ||||| | || ||||| | |||| |||||| Sbjct 146 TATTTTTCCTTTCACATTTTCTATTGTATCAGATGGCTCTACTTCCAAGGTGATCGTTTT 205 Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||| | ||| || ||||| || ||||| Sbjct 206 GCCGGTAAGAGTCTTAACAAAAATTTGCAT 235 >seq326 Length=30629 Score = 136 bits (150), Expect = 3e-27 Identities = 120/150 (80%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 ||||| |||||| ||||| |||||||| |||||||| || ||||| ||||| ||||| || Sbjct 18230 CAATTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTG 18289 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 ||||| ||||||| | |||| || ||||| | ||| ||||| | |||| |||||| Sbjct 18290 TATTTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTT 18349 Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||| | ||| || ||||| |||||||| Sbjct 18350 GCCGGTAAGAGTCTTAACAAAAATCTGCAT 18379 Score = 134 bits (148), Expect = 1e-26 Identities = 118/147 (80%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 101323 TTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAAT 101382 || |||||| ||||| |||| ||| ||||||||||| ||||| || |||||||| ||||| Sbjct 19762 TTACTTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAAT 19821 Query 101383 TTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCC 101442 ||| || ||| |||| | |||||||| | ||||||||| ||||| | ||||| || Sbjct 19822 TTTACCCTTCACATTTTCAATTGTGTCAGAGGGTTCCACTTCCAGAGTAATGGTTTTCCC 19881 Query 101443 GGTTAAAGTTTTTACAAATATCTGCAT 101469 || | |||||| |||||||||||||| Sbjct 19882 AGTCAGAGTTTTCACAAATATCTGCAT 19908 Score = 122 bits (134), Expect = 7e-23 Identities = 112/142 (79%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||| ||||| ||||||||||||||||| || ||||| || || ||||||||||| || Sbjct 17393 TACCAGCAAAAATCAAACGCTGTTGATCTGGAGGAATTCCCTCCTTATCTTGAATCTTCC 17452 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 ||| ||| | || ||||| ||||| | ||||||||| | |||| ||||| || |||| Sbjct 17453 CTTTCACATTCTCAACAGTATCAGATGGTTCCACTTCCAACGTGATGGTTTTCCCAGTTA 17512 Query 101448 AAGTTTTTACAAATATCTGCAT 101469 || || ||||| |||||||| Sbjct 17513 GGGTCTTAACAAAAATCTGCAT 17534 Score = 122 bits (134), Expect = 7e-23 Identities = 112/142 (79%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||| ||||| |||| ||| || ||||| || ||||| |||||||||||||||||||| Sbjct 17676 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGC 17735 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 ||||||| | |||| || ||||| | ||| ||||| | |||| |||||||||||| | Sbjct 17736 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAA 17795 Query 101448 AAGTTTTTACAAATATCTGCAT 101469 ||| || || || || ||||| Sbjct 17796 GAGTCTTAACGAAAATTTGCAT 17817 Score = 122 bits (134), Expect = 7e-23 Identities = 112/142 (79%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||| ||||| |||| ||| || ||||| || ||||| |||||||||||||||||||| Sbjct 18521 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGC 18580 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 ||||||| | |||| || ||||| | ||| ||||| | |||| ||||||||||| | Sbjct 18581 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAATGTGATGGTTTTGCCGGTGA 18640 Query 101448 AAGTTTTTACAAATATCTGCAT 101469 ||| || ||||| || ||||| Sbjct 18641 GAGTCTTAACAAAAATTTGCAT 18662 Score = 122 bits (134), Expect = 7e-23 Identities = 114/145 (79%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 101325 GCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTT 101384 || |||| ||||| || | ||||||||||| || || ||||||||||| |||||||| | Sbjct 19432 GCATACCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCT 19491 Query 101385 TTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGG 101444 | ||||||| |||| | || || |||| || |||||||| || | |||||| || | Sbjct 19492 TGCTTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTG 19551 Query 101445 TTAAAGTTTTTACAAATATCTGCAT 101469 | || ||||| |||||||||||||| Sbjct 19552 TCAACGTTTTCACAAATATCTGCAT 19576 >seq117 Length=123509 Score = 127 bits (140), Expect = 2e-24 Identities = 114/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||| ||||||||||| || || ||||| || ||||||||||| |||||||||||||| Sbjct 9014 TTACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTA 9073 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||||||| |||| | || ||||| | || ||||| | |||| ||||| || ||| Sbjct 9074 CTTTTTACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 9133 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 || ||||| ||||| |||||||| Sbjct 9134 AATGTTTTCACAAAAATCTGCAT 9156 Score = 125 bits (138), Expect = 6e-24 Identities = 113/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||| ||||||||||| || || ||||| || ||||||||||| |||||||||||||| Sbjct 8728 TACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTAC 8787 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 ||||||| |||| | || ||||| | || ||||| | |||| ||||| || |||| Sbjct 8788 TTTTTACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTA 8847 Query 101448 AAGTTTTTACAAATATCTGCAT 101469 | ||||| ||||| |||||||| Sbjct 8848 ATGTTTTCACAAAAATCTGCAT 8869 Score = 118 bits (130), Expect = 8e-22 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||| ||||||||||| || || ||||| || ||||||||||| |||||||||||||| Sbjct 9301 TTACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTA 9360 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||| ||| |||| | || || || | || ||||| | |||| ||||| || ||| Sbjct 9361 CTTTTCACATTTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 9420 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 || ||||| ||||| |||||||| Sbjct 9421 AATGTTTTCACAAAAATCTGCAT 9443 Score = 116 bits (128), Expect = 3e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||| ||||||||||| || || ||||| || ||||||||||| |||||||||||||| Sbjct 9588 TACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTAC 9647 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 ||| ||| |||| | || || || | || ||||| | |||| ||||| || |||| Sbjct 9648 TTTTCACATTTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTA 9707 Query 101448 AAGTTTTTACAAATATCTGCAT 101469 | ||||| ||||| |||||||| Sbjct 9708 ATGTTTTCACAAAAATCTGCAT 9729 Score = 100 bits (110), Expect = 2e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||||||||| || || | || ||||| || ||||||||||| ||||| |||||||| Sbjct 10269 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 10328 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||| ||| |||| | ||||| || | ||| ||||| || || | ||||| || || Sbjct 10329 CTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 10388 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || || ||||||||||| Sbjct 10389 AGTGTCTTCACGAATATCTGCAT 10411 >seq2524 Length=468 Score = 125 bits (138), Expect = 6e-24 Identities = 113/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||| ||||| |||| ||| || ||||| || ||||| |||||||||||||||||||| Sbjct 231 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGC 290 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 ||||||| | |||| || ||||| | ||| ||||| | |||| |||||||||||| | Sbjct 291 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAA 350 Query 101448 AAGTTTTTACAAATATCTGCAT 101469 ||| || ||||| || ||||| Sbjct 351 GAGTCTTAACAAAAATTTGCAT 372 >seq1863 Length=625 Score = 125 bits (138), Expect = 6e-24 Identities = 113/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||| ||||| |||| ||| || ||||| || ||||| |||||||||||||||||||| Sbjct 148 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGC 89 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 ||||||| |||||| || ||||| | || ||||| | |||| |||||||||||| | Sbjct 88 CTTTTACATTTTCTATTGTATCAGATGGCTCTACTTCCAAGGTGATCGTTTTGCCGGTAA 29 Query 101448 AAGTTTTTACAAATATCTGCAT 101469 ||| || ||||| || ||||| Sbjct 28 GAGTCTTAACAAAAATTTGCAT 7 Score = 125 bits (138), Expect = 6e-24 Identities = 113/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||| ||||| |||| ||| || ||||| || ||||| |||||||||||||||||||| Sbjct 431 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGC 372 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 ||||||| | |||| || ||||| | ||| ||||| | |||| |||||||||||| | Sbjct 371 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAA 312 Query 101448 AAGTTTTTACAAATATCTGCAT 101469 ||| || ||||| || ||||| Sbjct 311 GAGTCTTAACAAAAATTTGCAT 290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396249658794507