Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24] 5,951 sequences; 50,853,738 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq282 336 1e-86 seq5215 120 2e-21 seq1863 116 2e-20 seq326 116 2e-20 seq332 113 3e-19 seq69 113 3e-19 seq2524 111 1e-18 seq21 96.9 2e-14 seq72 93.3 3e-13 seq95 91.5 1e-12 >seq282 Length=46907 Score = 336 bits (372), Expect = 1e-86 Identities = 444/611 (73%), Gaps = 11/611 (2%) Strand=Plus/Plus Query 474317 ATGTCCAGAATTGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGG 474376 ||||| | | ||| ||||| |||||||| || ||||| ||||||||||| | || | Sbjct 11245 ATGTCGAAGAATGCTATTGGAATTGATTTGGGTACTACGTACAGTTGTGTTGGCGTGTTC 11304 Query 474377 CAAAATGGTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATAT 474436 || |||||||||| ||||| |||||||| || ||||| ||| | || || ||| ||| Sbjct 11305 CAGCATGGTAAAGTTGAAATTATTGCCAACGATCAAGGGAATCGTACCACGCCAAGTTAT 11364 Query 474437 GTTTCTTTTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCT 474496 ||| |||| || || || |||| || ||||||||||| || ||| |||||| ||| | Sbjct 11365 GTTGCTTTCACCGATACCGAACGACTGATTGGAGATGCGGCAAAAAATCAAGTTGCGTTG 11424 Query 474497 AATCCTGTTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACC 474556 |||||| |||||| |||||||||| || || | || |||||| ||||||||| | Sbjct 11425 AATCCTCATAATACAGTTTTTGATGCGAAGCGACTCATCGGTCGTCGATTTGATGATGCT 11484 Query 474557 ACTGTCCAATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCA 474616 | || || ||||||||| |||||||| || || | || || | ||| ||||| Sbjct 11485 GCGGTGCAGTCTGATATGAAACATTGGCCATTCAAAATTATCAACGATGGATCGAAACCT 11544 Query 474617 TATATAGAAG--CAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTT 474674 | || ||| |||||| ||| || | || |||| |||| ||| |||| | Sbjct 11545 AAAATTCAAGTCGAATACA--AAGGCGAGTCGAAGTCATTTACACCAGAAGAAATCAGTG 11602 Query 474675 CAATGGTTTTAGCCAAAATGAAACAAACCGC--GAGCTCATATCTTGGACAAGAAGTAAC 474732 | ||||| |||| || ||||| |||| || |||| ||| | ||| || || | Sbjct 11603 CTATGGTGTTAGTGAAGATGAAGGAAACTGCCGAAGCT--TATTTGGGAAAAACTGTTAA 11660 Query 474733 TGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGA 474792 ||||| |||||||||||||| ||||||||||| |||||||| ||||| || || ||||| Sbjct 11661 GGATGCCGTAATTACTGTTCCGGCATATTTTAACGATTCTCAGCGTCAGGCGACCAAAGA 11720 Query 474793 TGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGC 474852 || |||| ||| | ||| | |||||||| ||||| || || ||||||||||| || || Sbjct 11721 CGCTGGAACGATTTCTGGTTTGAATGTTTTGCGTATCATCAACGAACCAACAGCGGCTGC 11780 Query 474853 ACTTGCTTATGGTCTTGATAAGAATTCTGACAAAGAAGTAAATGTTTTAATCTTTGA--- 474909 | |||||||||| ||||||| || || | ||| ||||||| | || ||||| Sbjct 11781 AATTGCTTATGGACTTGATAGAAAGGGTGGCGGTGAACGAAATGTTCTGATATTTGACCT 11840 Query 474910 TTGTGGAGGTA 474920 | |||| |||| Sbjct 11841 TGGTGGTGGTA 11851 >seq5215 Length=241 Score = 120 bits (132), Expect = 2e-21 Identities = 115/145 (79%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 480626 TTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAAT 480685 || ||| ||||||||||| | |||||||||||| ||||||||||| || || ||||| || Sbjct 89 TTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGTAT 148 Query 480686 CTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTAC 480744 ||| ||| ||| ||| || ||||||| || | | || ||| ||| || ||||| | Sbjct 149 TTTTCCTTTCACATTTTCTATTGTATCAGATGGCTCTACTTCCAA-GGTGATCGTTTTGC 207 Query 480745 CGGTGAGAGTCTTAACGAAAATTTG 480769 |||| ||||||||||| |||||||| Sbjct 208 CGGTAAGAGTCTTAACAAAAATTTG 232 >seq1863 Length=625 Score = 116 bits (128), Expect = 2e-20 Identities = 110/138 (80%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 ||||||||||| |||||||| ||||| || ||||||||||| || |||||||| || | Sbjct 146 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 87 Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751 || ||| ||| || ||||||| || | | || ||| ||| || ||||| ||||| || Sbjct 86 TTTACATTTTCTATTGTATCAGATGGCTCTACTTCCAA-GGTGATCGTTTTGCCGGTAAG 28 Query 480752 AGTCTTAACGAAAATTTG 480769 ||||||||| |||||||| Sbjct 27 AGTCTTAACAAAAATTTG 10 Score = 107 bits (118), Expect = 1e-17 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 ||||||||||| |||||||| ||||| || ||||||||||| || |||||||| || | Sbjct 429 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 370 Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752 || ||| || || ||||||| || ||| | ||| || ||||| ||||| ||| Sbjct 369 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 310 Query 480753 GTCTTAACGAAAATTTG 480769 |||||||| |||||||| Sbjct 309 GTCTTAACAAAAATTTG 293 >seq326 Length=30629 Score = 116 bits (128), Expect = 2e-20 Identities = 110/138 (80%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 ||||||||||| |||||||| ||||| || ||||||||||| || |||||||| || | Sbjct 17678 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 17737 Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751 || ||| || || ||||||| || | | || ||| ||| || ||||| ||||| || Sbjct 17738 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAA-GGTGATCGTTTTGCCGGTAAG 17796 Query 480752 AGTCTTAACGAAAATTTG 480769 |||||||||||||||||| Sbjct 17797 AGTCTTAACGAAAATTTG 17814 Score = 111 bits (122), Expect = 1e-18 Identities = 109/138 (79%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 ||||||||||| |||||||| ||||| || ||||||||||| || |||||||| || | Sbjct 18523 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 18582 Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751 || ||| || || ||||||| || | | || ||| || || ||||| |||||||| Sbjct 18583 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAA-TGTGATGGTTTTGCCGGTGAG 18641 Query 480752 AGTCTTAACGAAAATTTG 480769 ||||||||| |||||||| Sbjct 18642 AGTCTTAACAAAAATTTG 18659 Score = 109 bits (120), Expect = 4e-18 Identities = 112/144 (78%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 480627 TGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATC 480686 |||| ||||||||||| | |||||||||||| || |||||||||||||| || || || Sbjct 17952 TGCTCACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATT 18011 Query 480687 TTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACC 480745 || ||| ||| |||||| ||||||| || | | || ||| || || ||||| || Sbjct 18012 TTCCCTTTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAA-AGTTATTGTTTTTCC 18070 Query 480746 GGTGAGAGTCTTAACGAAAATTTG 480769 || || ||||||||||||||||| Sbjct 18071 AGTAAGGGTCTTAACGAAAATTTG 18094 Score = 109 bits (120), Expect = 4e-18 Identities = 112/144 (78%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 480627 TGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATC 480686 |||| ||||||||||| | |||||||||||| || |||||||||||||| || || || Sbjct 18797 TGCTCACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATT 18856 Query 480687 TTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACC 480745 || ||| ||| |||||| ||||||| || | | || ||| || || ||||| || Sbjct 18857 TTCCCTTTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAA-AGTTATTGTTTTTCC 18915 Query 480746 GGTGAGAGTCTTAACGAAAATTTG 480769 || || ||||||||||||||||| Sbjct 18916 AGTAAGGGTCTTAACGAAAATTTG 18939 Score = 105 bits (116), Expect = 4e-17 Identities = 112/145 (77%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 480626 TTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAAT 480685 || ||| ||||||||||| | |||||||||||| || |||||||||||||| || || || Sbjct 18233 TTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTAT 18292 Query 480686 CTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTAC 480744 || ||| ||| || || ||||||| || | | || ||| ||| || ||||| | Sbjct 18293 TTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAA-GGTGATCGTTTTGC 18351 Query 480745 CGGTGAGAGTCTTAACGAAAATTTG 480769 |||| ||||||||||| ||||| || Sbjct 18352 CGGTAAGAGTCTTAACAAAAATCTG 18376 Score = 102 bits (112), Expect = 5e-16 Identities = 107/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 ||||||||||| | ||| |||||||| ||||||||||| ||||| ||||||||||| | Sbjct 17395 CCAGCAAAAATCAAACGCTGTTGATCTGGAGGAATTCCCTCCTTATCTTGAATCTTCCCT 17454 Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751 || ||| |||| |||||||| || | | || ||| || || ||||| || || || Sbjct 17455 TTCACATTCTCAACAGTATCAGATGGTTCCACTTCCAA-CGTGATGGTTTTCCCAGTTAG 17513 Query 480752 AGTCTTAACGAAAATTTG 480769 |||||||| ||||| || Sbjct 17514 GGTCTTAACAAAAATCTG 17531 Score = 93.3 bits (102), Expect = 3e-13 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 480626 TTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAAT 480685 || ||| ||||||||||| |||||||||||||| || |||||||| || || || ||||| Sbjct 19762 TTACTTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAAT 19821 Query 480686 CTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACC 480745 || || ||| |||||| || |||| | || ||| || ||||| ||||| || Sbjct 19822 TTTACCCTTCACATTTTCAATTGTGTCAGAGGGTTCCACTTCCAGAGTAATGGTTTTCCC 19881 Query 480746 GGTGAGAGTCTTAACGAAAATTTG 480769 || ||||| || || || || || Sbjct 19882 AGTCAGAGTTTTCACAAATATCTG 19905 Score = 89.7 bits (98), Expect = 3e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 |||||||||||||| || |||||||| || || || ||||| |||||||||||||| | Sbjct 19437 CCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCTTGCTT 19496 Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752 || ||| |||||| ||||| | | | |||||| ||||| ||||| || || | Sbjct 19497 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 19556 Query 480753 GTCTTAACGAAAATTTG 480769 || || || || || || Sbjct 19557 GTTTTCACAAATATCTG 19573 >seq332 Length=28044 Score = 113 bits (124), Expect = 3e-19 Identities = 113/144 (78%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 480627 TGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATC 480686 ||||| ||||||||||| | |||||||||||| || |||||||||||||| || || || Sbjct 27493 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATT 27552 Query 480687 TTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACC 480745 || ||| ||| || || ||||||| || | | || ||| ||| || ||||| || Sbjct 27553 TTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAA-GGTGATCGTTTTGCC 27611 Query 480746 GGTGAGAGTCTTAACGAAAATTTG 480769 ||| ||||||||||| |||||||| Sbjct 27612 GGTAAGAGTCTTAACAAAAATTTG 27635 Score = 113 bits (124), Expect = 3e-19 Identities = 113/144 (78%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 480627 TGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATC 480686 ||||| ||||||||||| | |||||||||||| ||||||||||| || || ||||| || Sbjct 27772 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGTATT 27831 Query 480687 TTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACC 480745 ||| ||| ||| ||| || ||||||| || | | || ||| || || ||||| || Sbjct 27832 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAA-CGTGATGGTTTTCCC 27890 Query 480746 GGTGAGAGTCTTAACGAAAATTTG 480769 || ||||||||||| |||||||| Sbjct 27891 AGTAAGAGTCTTAACAAAAATTTG 27914 Score = 111 bits (122), Expect = 1e-18 Identities = 109/138 (79%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 ||||||||||| |||||||| ||||| || ||||||||||| || |||||||| || | Sbjct 480 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 539 Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751 || ||| || || ||||||| || | | || ||| ||| || ||||| ||||| || Sbjct 540 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAA-GGTGATCGTTTTGCCGGTAAG 598 Query 480752 AGTCTTAACGAAAATTTG 480769 ||||||||| |||||||| Sbjct 599 AGTCTTAACAAAAATTTG 616 Score = 107 bits (118), Expect = 1e-17 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 ||||||||||| |||||||| ||||| || ||||||||||| || |||||||| || | Sbjct 197 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 256 Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752 || ||| || || ||||||| || ||| | ||| || ||||| ||||| ||| Sbjct 257 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 316 Query 480753 GTCTTAACGAAAATTTG 480769 |||||||| |||||||| Sbjct 317 GTCTTAACAAAAATTTG 333 Score = 107 bits (118), Expect = 1e-17 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 ||||||||||| |||||||| ||||| || |||||||||||||| || || || || | Sbjct 26940 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 26999 Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752 || ||| || || ||||||| || ||| | ||| || ||||| ||||| ||| Sbjct 27000 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 27059 Query 480753 GTCTTAACGAAAATTTG 480769 ||||||||||||||||| Sbjct 27060 GTCTTAACGAAAATTTG 27076 Score = 105 bits (116), Expect = 4e-17 Identities = 112/145 (77%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 480626 TTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAAT 480685 || ||| ||||||||||| | |||||| ||||| || |||||||||||||| || || || Sbjct 26650 TTACTTACCAGCAAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCCTTATCCTGTAT 26709 Query 480686 CTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTAC 480744 || ||| ||| || || ||||||| || | | || ||| ||| || ||||| | Sbjct 26710 TTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAA-GGTGATCGTTTTGC 26768 Query 480745 CGGTGAGAGTCTTAACGAAAATTTG 480769 |||| ||||||||||| |||||||| Sbjct 26769 CGGTAAGAGTCTTAACAAAAATTTG 26793 Score = 105 bits (116), Expect = 4e-17 Identities = 112/145 (77%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 480626 TTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAAT 480685 || ||| ||||||||||| | ||| |||||||| || |||||||||||||| || || || Sbjct 27213 TTACTTACCAGCAAAAATCAAACGCTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTAT 27272 Query 480686 CTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTAC 480744 || ||| ||| || || ||||||| || | | || ||| ||| || ||||| | Sbjct 27273 TTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAA-GGTGATCGTTTTGC 27331 Query 480745 CGGTGAGAGTCTTAACGAAAATTTG 480769 |||| ||||||||||| |||||||| Sbjct 27332 CGGTAAGAGTCTTAACAAAAATTTG 27356 Score = 95.1 bits (104), Expect = 8e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 ||||||||||| | |||||| ||||| || |||||||| || || || || || || | Sbjct 26375 CCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 26434 Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752 || ||| || || ||||||| || ||| | ||| || ||||| ||||| ||| Sbjct 26435 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 26494 Query 480753 GTCTTAACGAAAATTTG 480769 ||||||||||||||||| Sbjct 26495 GTCTTAACGAAAATTTG 26511 Score = 89.7 bits (98), Expect = 3e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 |||||||||||||| || |||||||| || || || ||||| |||||||||||||| | Sbjct 1114 CCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCTTGCTT 1173 Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752 || ||| |||||| ||||| | | | |||||| ||||| ||||| || || | Sbjct 1174 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 1233 Query 480753 GTCTTAACGAAAATTTG 480769 || || || || || || Sbjct 1234 GTTTTCACAAATATCTG 1250 Score = 89.7 bits (98), Expect = 3e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 480626 TTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAAT 480685 || ||| ||||||||||| |||||||||||||| || |||||||| || || || ||||| Sbjct 1439 TTACTTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAAT 1498 Query 480686 CTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACC 480745 || || ||| ||||| || || | | || ||| || ||||| ||||| || Sbjct 1499 TTTACCCTTCACATTTTCAACTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCC 1558 Query 480746 GGTGAGAGTCTTAACGAAAATTTG 480769 ||| ||||| || || || || || Sbjct 1559 GGTCAGAGTTTTGACAAATATCTG 1582 Score = 89.7 bits (98), Expect = 3e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 480626 TTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAAT 480685 || ||| ||||||||||| |||||||||||||| || |||||||| || || || ||||| Sbjct 17796 TTACTTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAAT 17855 Query 480686 CTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACC 480745 || || ||| ||||| || || | | || ||| || ||||| ||||| || Sbjct 17856 TTTACCCTTCACATTTTCAACTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCC 17915 Query 480746 GGTGAGAGTCTTAACGAAAATTTG 480769 ||| ||||| || || || || || Sbjct 17916 GGTCAGAGTTTTGACAAATATCTG 17939 >seq69 Length=193012 Score = 113 bits (124), Expect = 3e-19 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 474638 GGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAA 474697 ||||||| ||| || | || ||| ||||||| | |||||||| ||||||||| Sbjct 143824 GGTGAAAAGAAATTGTTCACTCCCGAAGAAATTTCAGCGATGGTTTTGTTGAAAATGAAA 143765 Query 474698 CAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGC 474756 ||| || ||| | ||| | || ||||||| | |||| || | || |||||||| Sbjct 143764 GAAATTGCCGAGG-CTTATTTGGGCAAAGAAGTGAAAAATGCCGTCGTCACGGTTCCAGC 143706 Query 474757 ATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAA 474816 ||||| || ||| | ||||||||||| || |||||||| || | ||||| |||||||| Sbjct 143705 TTATTTCAACGATGCACAACGTCAAGCTACCAAAGATGCAGGCACCATTGCTGGTCTTAA 143646 Query 474817 TGTTTTACGTATTATTAATGAACC 474840 |||| | || || || || ||||| Sbjct 143645 TGTTGTTCGAATCATCAACGAACC 143622 Score = 93.3 bits (102), Expect = 3e-13 Identities = 242/366 (66%), Gaps = 6/366 (2%) Strand=Plus/Minus Query 475793 AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAA 475852 ||||| || |||||||| || || || ||||| ||||| || | || | || ||| || Sbjct 142876 AATCCAGACGAAGCTGTCGCCTACGGTGCTGCGGTCCAGGCTGGCGTTATTTCCGGTGAA 142817 Query 475853 TCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGTCTT 475912 || ||| ||| | || |||| || | ||||| | ||| | | || || || Sbjct 142816 ---GA--AGATACTGG-TGATCTTGTGCTGTTGGACGTCAATCCGTTGACTTTGGGAATT 142763 Query 475913 GAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCATGCAAA 475972 ||||| || || || | ||||| || || ||| ||| ||||| | || ||| Sbjct 142762 GAAACTGTCGGCGGAGTGATGACGAAGCTGATTCCCAGGAATACGGTAGTGCCGACCAAG 142703 Query 475973 AAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAATCTTT 476032 ||||| | |||| ||| | | || ||||| | || || || || ||| | || Sbjct 142702 AAATCCCAGATATTCAGCACCGCTGCCGACAATCAGCCCACAGTTACTATTCAAGTTTTC 142643 Query 476033 GAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGT 476092 ||||| ||| || | | || ||||| ||| | ||||| | ||| |||| || Sbjct 142642 GAAGGCGAACGACCAATGACCAAAGACAATCATCTTCTTGGGAAATTTGATCTGACCGGC 142583 Query 476093 ATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAAT 476152 || ||||| ||||| | || || || |||||||||||||| || ||||| || | || Sbjct 142582 ATACCTCCGGCTCCGCGTGGGGTACCACAAATTGAAGTTACATTCGATATCGACGTGAAC 142523 Query 476153 GGTATT 476158 || ||| Sbjct 142522 GGCATT 142517 >seq2524 Length=468 Score = 111 bits (122), Expect = 1e-18 Identities = 109/138 (79%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 ||||||||||| |||||||| ||||| || ||||||||||| || |||||||| || | Sbjct 233 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 292 Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751 || ||| || || ||||||| || | | || ||| ||| || ||||| ||||| || Sbjct 293 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAA-GGTGATCGTTTTGCCGGTAAG 351 Query 480752 AGTCTTAACGAAAATTTG 480769 ||||||||| |||||||| Sbjct 352 AGTCTTAACAAAAATTTG 369 >seq21 Length=314379 Score = 96.9 bits (106), Expect = 2e-14 Identities = 143/200 (72%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 296075 TTGGAAGATGGATTGATATTAATAATGAATATAAAACAATGGATAAAAATTTTATGGAAT 296134 |||| ||||||| ||| |||| ||||| |||||||| | || || ||| ||||||| Sbjct 175238 TTGGTCGATGGATAGATTTTAAAAATGACTATAAAACTTTATATCCAAGTTTCATGGAAT 175179 Query 296135 CTGTTATTTGGTCATTTAAACAACTTTATGA-AAAGGAAATGATTTTTGAAGGTTATAAA 296193 |||| ||| ||| ||||| || ||| | ||||| || | | |||| ||| Sbjct 175178 CTGTATGGTGGGTATTCAAACAGCTGTATAACAAAGGTCTTG-TCTACAGAGGTGTAAAA 175120 Query 296194 GTTATGCCTTATTCTACTGGTTGCAATACACCATTATCTCATTTTGAGGCAAAACAAAAT 296253 || ||||| | |||||||| |||| || ||||| || ||||||| | ||||||| Sbjct 175119 GTGATGCCATTTTCTACTGCTTGCGGGACTCCATTGTCAAATTTTGAATCTGGACAAAAT 175060 Query 296254 TATAAAGAGATTATTGATCC 296273 || ||||| | |||||||| Sbjct 175059 TACAAAGAAGTCATTGATCC 175040 >seq72 Length=186561 Score = 93.3 bits (102), Expect = 3e-13 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 299114 GAAGAAGAGATTAAAAAAGCTTATAAAAAATTAGCTATGAAATATCATCCTGACAGAAAT 299173 ||||| || || |||||||||||| || | || |||||||||||||||||| || Sbjct 173309 GAAGATGAAATCAAAAAAGCTTATCGGAAGATGGCGTTGAAATATCATCCTGACAAGAAC 173250 Query 299174 AAAAGTCCTGAAGCGGAAGAAAAGTTTaaaaaaaTAAGTCATGCTTATAGTATTCTTTCA 299233 ||||| ||||| || ||| ||||||||| | || | || || | |||| Sbjct 173249 AAAAGCCCTGACGCAGAAAGCAAGTTTAAAGAGATTGCAGAAGCATACGATGTTCTGAGT 173190 Query 299234 GATCCAACCAAAAAAGAAGTATATGATAAATTTGGAGAAGAAGG 299277 ||| | | || |||||| |||| ||||||||||| |||||||| Sbjct 173189 GATGCTAAAAAGAAAGAAATATACGATAAATTTGGTGAAGAAGG 173146 >seq95 Length=149630 Score = 91.5 bits (100), Expect = 1e-12 Identities = 74/90 (82%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 ||||| ||||| || || | |||||||| ||||| ||||||||||||||||| |||||| Sbjct 15782 GGTATACCTCCGGCCCCTCGTGGAGTTCCACAAATAGAAGTTACTTTTGATATCGATGCA 15723 Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGAT 476179 |||||||| || |||| | |||| | ||| Sbjct 15722 AATGGTATAGTTCATGTCAGTGCTCGAGAT 15693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267923932735748