Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24]
5,951 sequences; 50,853,738 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq282 336 1e-86
seq5215 120 2e-21
seq1863 116 2e-20
seq326 116 2e-20
seq332 113 3e-19
seq69 113 3e-19
seq2524 111 1e-18
seq21 96.9 2e-14
seq72 93.3 3e-13
seq95 91.5 1e-12
>seq282
Length=46907
Score = 336 bits (372), Expect = 1e-86
Identities = 444/611 (73%), Gaps = 11/611 (2%)
Strand=Plus/Plus
Query 474317 ATGTCCAGAATTGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGG 474376
||||| | | ||| ||||| |||||||| || ||||| ||||||||||| | || |
Sbjct 11245 ATGTCGAAGAATGCTATTGGAATTGATTTGGGTACTACGTACAGTTGTGTTGGCGTGTTC 11304
Query 474377 CAAAATGGTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATAT 474436
|| |||||||||| ||||| |||||||| || ||||| ||| | || || ||| |||
Sbjct 11305 CAGCATGGTAAAGTTGAAATTATTGCCAACGATCAAGGGAATCGTACCACGCCAAGTTAT 11364
Query 474437 GTTTCTTTTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCT 474496
||| |||| || || || |||| || ||||||||||| || ||| |||||| ||| |
Sbjct 11365 GTTGCTTTCACCGATACCGAACGACTGATTGGAGATGCGGCAAAAAATCAAGTTGCGTTG 11424
Query 474497 AATCCTGTTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACC 474556
|||||| |||||| |||||||||| || || | || |||||| ||||||||| |
Sbjct 11425 AATCCTCATAATACAGTTTTTGATGCGAAGCGACTCATCGGTCGTCGATTTGATGATGCT 11484
Query 474557 ACTGTCCAATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCA 474616
| || || ||||||||| |||||||| || || | || || | ||| |||||
Sbjct 11485 GCGGTGCAGTCTGATATGAAACATTGGCCATTCAAAATTATCAACGATGGATCGAAACCT 11544
Query 474617 TATATAGAAG--CAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTT 474674
| || ||| |||||| ||| || | || |||| |||| ||| |||| |
Sbjct 11545 AAAATTCAAGTCGAATACA--AAGGCGAGTCGAAGTCATTTACACCAGAAGAAATCAGTG 11602
Query 474675 CAATGGTTTTAGCCAAAATGAAACAAACCGC--GAGCTCATATCTTGGACAAGAAGTAAC 474732
| ||||| |||| || ||||| |||| || |||| ||| | ||| || || |
Sbjct 11603 CTATGGTGTTAGTGAAGATGAAGGAAACTGCCGAAGCT--TATTTGGGAAAAACTGTTAA 11660
Query 474733 TGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGA 474792
||||| |||||||||||||| ||||||||||| |||||||| ||||| || || |||||
Sbjct 11661 GGATGCCGTAATTACTGTTCCGGCATATTTTAACGATTCTCAGCGTCAGGCGACCAAAGA 11720
Query 474793 TGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGC 474852
|| |||| ||| | ||| | |||||||| ||||| || || ||||||||||| || ||
Sbjct 11721 CGCTGGAACGATTTCTGGTTTGAATGTTTTGCGTATCATCAACGAACCAACAGCGGCTGC 11780
Query 474853 ACTTGCTTATGGTCTTGATAAGAATTCTGACAAAGAAGTAAATGTTTTAATCTTTGA--- 474909
| |||||||||| ||||||| || || | ||| ||||||| | || |||||
Sbjct 11781 AATTGCTTATGGACTTGATAGAAAGGGTGGCGGTGAACGAAATGTTCTGATATTTGACCT 11840
Query 474910 TTGTGGAGGTA 474920
| |||| ||||
Sbjct 11841 TGGTGGTGGTA 11851
>seq5215
Length=241
Score = 120 bits (132), Expect = 2e-21
Identities = 115/145 (79%), Gaps = 2/145 (1%)
Strand=Plus/Plus
Query 480626 TTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAAT 480685
|| ||| ||||||||||| | |||||||||||| ||||||||||| || || ||||| ||
Sbjct 89 TTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGTAT 148
Query 480686 CTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTAC 480744
||| ||| ||| ||| || ||||||| || | | || ||| ||| || ||||| |
Sbjct 149 TTTTCCTTTCACATTTTCTATTGTATCAGATGGCTCTACTTCCAA-GGTGATCGTTTTGC 207
Query 480745 CGGTGAGAGTCTTAACGAAAATTTG 480769
|||| ||||||||||| ||||||||
Sbjct 208 CGGTAAGAGTCTTAACAAAAATTTG 232
>seq1863
Length=625
Score = 116 bits (128), Expect = 2e-20
Identities = 110/138 (80%), Gaps = 2/138 (1%)
Strand=Plus/Minus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
||||||||||| |||||||| ||||| || ||||||||||| || |||||||| || |
Sbjct 146 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 87
Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751
|| ||| ||| || ||||||| || | | || ||| ||| || ||||| ||||| ||
Sbjct 86 TTTACATTTTCTATTGTATCAGATGGCTCTACTTCCAA-GGTGATCGTTTTGCCGGTAAG 28
Query 480752 AGTCTTAACGAAAATTTG 480769
||||||||| ||||||||
Sbjct 27 AGTCTTAACAAAAATTTG 10
Score = 107 bits (118), Expect = 1e-17
Identities = 106/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
||||||||||| |||||||| ||||| || ||||||||||| || |||||||| || |
Sbjct 429 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 370
Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752
|| ||| || || ||||||| || ||| | ||| || ||||| ||||| |||
Sbjct 369 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 310
Query 480753 GTCTTAACGAAAATTTG 480769
|||||||| ||||||||
Sbjct 309 GTCTTAACAAAAATTTG 293
>seq326
Length=30629
Score = 116 bits (128), Expect = 2e-20
Identities = 110/138 (80%), Gaps = 2/138 (1%)
Strand=Plus/Plus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
||||||||||| |||||||| ||||| || ||||||||||| || |||||||| || |
Sbjct 17678 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 17737
Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751
|| ||| || || ||||||| || | | || ||| ||| || ||||| ||||| ||
Sbjct 17738 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAA-GGTGATCGTTTTGCCGGTAAG 17796
Query 480752 AGTCTTAACGAAAATTTG 480769
||||||||||||||||||
Sbjct 17797 AGTCTTAACGAAAATTTG 17814
Score = 111 bits (122), Expect = 1e-18
Identities = 109/138 (79%), Gaps = 2/138 (1%)
Strand=Plus/Plus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
||||||||||| |||||||| ||||| || ||||||||||| || |||||||| || |
Sbjct 18523 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 18582
Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751
|| ||| || || ||||||| || | | || ||| || || ||||| ||||||||
Sbjct 18583 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAA-TGTGATGGTTTTGCCGGTGAG 18641
Query 480752 AGTCTTAACGAAAATTTG 480769
||||||||| ||||||||
Sbjct 18642 AGTCTTAACAAAAATTTG 18659
Score = 109 bits (120), Expect = 4e-18
Identities = 112/144 (78%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 480627 TGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATC 480686
|||| ||||||||||| | |||||||||||| || |||||||||||||| || || ||
Sbjct 17952 TGCTCACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATT 18011
Query 480687 TTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACC 480745
|| ||| ||| |||||| ||||||| || | | || ||| || || ||||| ||
Sbjct 18012 TTCCCTTTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAA-AGTTATTGTTTTTCC 18070
Query 480746 GGTGAGAGTCTTAACGAAAATTTG 480769
|| || |||||||||||||||||
Sbjct 18071 AGTAAGGGTCTTAACGAAAATTTG 18094
Score = 109 bits (120), Expect = 4e-18
Identities = 112/144 (78%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 480627 TGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATC 480686
|||| ||||||||||| | |||||||||||| || |||||||||||||| || || ||
Sbjct 18797 TGCTCACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATT 18856
Query 480687 TTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACC 480745
|| ||| ||| |||||| ||||||| || | | || ||| || || ||||| ||
Sbjct 18857 TTCCCTTTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAA-AGTTATTGTTTTTCC 18915
Query 480746 GGTGAGAGTCTTAACGAAAATTTG 480769
|| || |||||||||||||||||
Sbjct 18916 AGTAAGGGTCTTAACGAAAATTTG 18939
Score = 105 bits (116), Expect = 4e-17
Identities = 112/145 (77%), Gaps = 2/145 (1%)
Strand=Plus/Plus
Query 480626 TTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAAT 480685
|| ||| ||||||||||| | |||||||||||| || |||||||||||||| || || ||
Sbjct 18233 TTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTAT 18292
Query 480686 CTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTAC 480744
|| ||| ||| || || ||||||| || | | || ||| ||| || ||||| |
Sbjct 18293 TTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAA-GGTGATCGTTTTGC 18351
Query 480745 CGGTGAGAGTCTTAACGAAAATTTG 480769
|||| ||||||||||| ||||| ||
Sbjct 18352 CGGTAAGAGTCTTAACAAAAATCTG 18376
Score = 102 bits (112), Expect = 5e-16
Identities = 107/138 (78%), Gaps = 2/138 (1%)
Strand=Plus/Plus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
||||||||||| | ||| |||||||| ||||||||||| ||||| ||||||||||| |
Sbjct 17395 CCAGCAAAAATCAAACGCTGTTGATCTGGAGGAATTCCCTCCTTATCTTGAATCTTCCCT 17454
Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751
|| ||| |||| |||||||| || | | || ||| || || ||||| || || ||
Sbjct 17455 TTCACATTCTCAACAGTATCAGATGGTTCCACTTCCAA-CGTGATGGTTTTCCCAGTTAG 17513
Query 480752 AGTCTTAACGAAAATTTG 480769
|||||||| ||||| ||
Sbjct 17514 GGTCTTAACAAAAATCTG 17531
Score = 93.3 bits (102), Expect = 3e-13
Identities = 107/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 480626 TTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAAT 480685
|| ||| ||||||||||| |||||||||||||| || |||||||| || || || |||||
Sbjct 19762 TTACTTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAAT 19821
Query 480686 CTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACC 480745
|| || ||| |||||| || |||| | || ||| || ||||| ||||| ||
Sbjct 19822 TTTACCCTTCACATTTTCAATTGTGTCAGAGGGTTCCACTTCCAGAGTAATGGTTTTCCC 19881
Query 480746 GGTGAGAGTCTTAACGAAAATTTG 480769
|| ||||| || || || || ||
Sbjct 19882 AGTCAGAGTTTTCACAAATATCTG 19905
Score = 89.7 bits (98), Expect = 3e-12
Identities = 102/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
|||||||||||||| || |||||||| || || || ||||| |||||||||||||| |
Sbjct 19437 CCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCTTGCTT 19496
Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752
|| ||| |||||| ||||| | | | |||||| ||||| ||||| || || |
Sbjct 19497 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 19556
Query 480753 GTCTTAACGAAAATTTG 480769
|| || || || || ||
Sbjct 19557 GTTTTCACAAATATCTG 19573
>seq332
Length=28044
Score = 113 bits (124), Expect = 3e-19
Identities = 113/144 (78%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 480627 TGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATC 480686
||||| ||||||||||| | |||||||||||| || |||||||||||||| || || ||
Sbjct 27493 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATT 27552
Query 480687 TTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACC 480745
|| ||| ||| || || ||||||| || | | || ||| ||| || ||||| ||
Sbjct 27553 TTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAA-GGTGATCGTTTTGCC 27611
Query 480746 GGTGAGAGTCTTAACGAAAATTTG 480769
||| ||||||||||| ||||||||
Sbjct 27612 GGTAAGAGTCTTAACAAAAATTTG 27635
Score = 113 bits (124), Expect = 3e-19
Identities = 113/144 (78%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 480627 TGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATC 480686
||||| ||||||||||| | |||||||||||| ||||||||||| || || ||||| ||
Sbjct 27772 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGTATT 27831
Query 480687 TTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACC 480745
||| ||| ||| ||| || ||||||| || | | || ||| || || ||||| ||
Sbjct 27832 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAA-CGTGATGGTTTTCCC 27890
Query 480746 GGTGAGAGTCTTAACGAAAATTTG 480769
|| ||||||||||| ||||||||
Sbjct 27891 AGTAAGAGTCTTAACAAAAATTTG 27914
Score = 111 bits (122), Expect = 1e-18
Identities = 109/138 (79%), Gaps = 2/138 (1%)
Strand=Plus/Plus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
||||||||||| |||||||| ||||| || ||||||||||| || |||||||| || |
Sbjct 480 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 539
Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751
|| ||| || || ||||||| || | | || ||| ||| || ||||| ||||| ||
Sbjct 540 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAA-GGTGATCGTTTTGCCGGTAAG 598
Query 480752 AGTCTTAACGAAAATTTG 480769
||||||||| ||||||||
Sbjct 599 AGTCTTAACAAAAATTTG 616
Score = 107 bits (118), Expect = 1e-17
Identities = 106/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
||||||||||| |||||||| ||||| || ||||||||||| || |||||||| || |
Sbjct 197 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 256
Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752
|| ||| || || ||||||| || ||| | ||| || ||||| ||||| |||
Sbjct 257 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 316
Query 480753 GTCTTAACGAAAATTTG 480769
|||||||| ||||||||
Sbjct 317 GTCTTAACAAAAATTTG 333
Score = 107 bits (118), Expect = 1e-17
Identities = 106/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
||||||||||| |||||||| ||||| || |||||||||||||| || || || || |
Sbjct 26940 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 26999
Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752
|| ||| || || ||||||| || ||| | ||| || ||||| ||||| |||
Sbjct 27000 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 27059
Query 480753 GTCTTAACGAAAATTTG 480769
|||||||||||||||||
Sbjct 27060 GTCTTAACGAAAATTTG 27076
Score = 105 bits (116), Expect = 4e-17
Identities = 112/145 (77%), Gaps = 2/145 (1%)
Strand=Plus/Plus
Query 480626 TTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAAT 480685
|| ||| ||||||||||| | |||||| ||||| || |||||||||||||| || || ||
Sbjct 26650 TTACTTACCAGCAAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCCTTATCCTGTAT 26709
Query 480686 CTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTAC 480744
|| ||| ||| || || ||||||| || | | || ||| ||| || ||||| |
Sbjct 26710 TTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAA-GGTGATCGTTTTGC 26768
Query 480745 CGGTGAGAGTCTTAACGAAAATTTG 480769
|||| ||||||||||| ||||||||
Sbjct 26769 CGGTAAGAGTCTTAACAAAAATTTG 26793
Score = 105 bits (116), Expect = 4e-17
Identities = 112/145 (77%), Gaps = 2/145 (1%)
Strand=Plus/Plus
Query 480626 TTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAAT 480685
|| ||| ||||||||||| | ||| |||||||| || |||||||||||||| || || ||
Sbjct 27213 TTACTTACCAGCAAAAATCAAACGCTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTAT 27272
Query 480686 CTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTAC 480744
|| ||| ||| || || ||||||| || | | || ||| ||| || ||||| |
Sbjct 27273 TTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAA-GGTGATCGTTTTGC 27331
Query 480745 CGGTGAGAGTCTTAACGAAAATTTG 480769
|||| ||||||||||| ||||||||
Sbjct 27332 CGGTAAGAGTCTTAACAAAAATTTG 27356
Score = 95.1 bits (104), Expect = 8e-14
Identities = 103/137 (75%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
||||||||||| | |||||| ||||| || |||||||| || || || || || || |
Sbjct 26375 CCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 26434
Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752
|| ||| || || ||||||| || ||| | ||| || ||||| ||||| |||
Sbjct 26435 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 26494
Query 480753 GTCTTAACGAAAATTTG 480769
|||||||||||||||||
Sbjct 26495 GTCTTAACGAAAATTTG 26511
Score = 89.7 bits (98), Expect = 3e-12
Identities = 102/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
|||||||||||||| || |||||||| || || || ||||| |||||||||||||| |
Sbjct 1114 CCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCTTGCTT 1173
Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752
|| ||| |||||| ||||| | | | |||||| ||||| ||||| || || |
Sbjct 1174 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 1233
Query 480753 GTCTTAACGAAAATTTG 480769
|| || || || || ||
Sbjct 1234 GTTTTCACAAATATCTG 1250
Score = 89.7 bits (98), Expect = 3e-12
Identities = 106/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 480626 TTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAAT 480685
|| ||| ||||||||||| |||||||||||||| || |||||||| || || || |||||
Sbjct 1439 TTACTTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAAT 1498
Query 480686 CTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACC 480745
|| || ||| ||||| || || | | || ||| || ||||| ||||| ||
Sbjct 1499 TTTACCCTTCACATTTTCAACTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCC 1558
Query 480746 GGTGAGAGTCTTAACGAAAATTTG 480769
||| ||||| || || || || ||
Sbjct 1559 GGTCAGAGTTTTGACAAATATCTG 1582
Score = 89.7 bits (98), Expect = 3e-12
Identities = 106/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 480626 TTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAAT 480685
|| ||| ||||||||||| |||||||||||||| || |||||||| || || || |||||
Sbjct 17796 TTACTTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAAT 17855
Query 480686 CTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACC 480745
|| || ||| ||||| || || | | || ||| || ||||| ||||| ||
Sbjct 17856 TTTACCCTTCACATTTTCAACTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCC 17915
Query 480746 GGTGAGAGTCTTAACGAAAATTTG 480769
||| ||||| || || || || ||
Sbjct 17916 GGTCAGAGTTTTGACAAATATCTG 17939
>seq69
Length=193012
Score = 113 bits (124), Expect = 3e-19
Identities = 149/204 (73%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 474638 GGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAA 474697
||||||| ||| || | || ||| ||||||| | |||||||| |||||||||
Sbjct 143824 GGTGAAAAGAAATTGTTCACTCCCGAAGAAATTTCAGCGATGGTTTTGTTGAAAATGAAA 143765
Query 474698 CAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGC 474756
||| || ||| | ||| | || ||||||| | |||| || | || ||||||||
Sbjct 143764 GAAATTGCCGAGG-CTTATTTGGGCAAAGAAGTGAAAAATGCCGTCGTCACGGTTCCAGC 143706
Query 474757 ATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAA 474816
||||| || ||| | ||||||||||| || |||||||| || | ||||| ||||||||
Sbjct 143705 TTATTTCAACGATGCACAACGTCAAGCTACCAAAGATGCAGGCACCATTGCTGGTCTTAA 143646
Query 474817 TGTTTTACGTATTATTAATGAACC 474840
|||| | || || || || |||||
Sbjct 143645 TGTTGTTCGAATCATCAACGAACC 143622
Score = 93.3 bits (102), Expect = 3e-13
Identities = 242/366 (66%), Gaps = 6/366 (2%)
Strand=Plus/Minus
Query 475793 AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAA 475852
||||| || |||||||| || || || ||||| ||||| || | || | || ||| ||
Sbjct 142876 AATCCAGACGAAGCTGTCGCCTACGGTGCTGCGGTCCAGGCTGGCGTTATTTCCGGTGAA 142817
Query 475853 TCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGTCTT 475912
|| ||| ||| | || |||| || | ||||| | ||| | | || || ||
Sbjct 142816 ---GA--AGATACTGG-TGATCTTGTGCTGTTGGACGTCAATCCGTTGACTTTGGGAATT 142763
Query 475913 GAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCATGCAAA 475972
||||| || || || | ||||| || || ||| ||| ||||| | || |||
Sbjct 142762 GAAACTGTCGGCGGAGTGATGACGAAGCTGATTCCCAGGAATACGGTAGTGCCGACCAAG 142703
Query 475973 AAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAATCTTT 476032
||||| | |||| ||| | | || ||||| | || || || || ||| | ||
Sbjct 142702 AAATCCCAGATATTCAGCACCGCTGCCGACAATCAGCCCACAGTTACTATTCAAGTTTTC 142643
Query 476033 GAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGT 476092
||||| ||| || | | || ||||| ||| | ||||| | ||| |||| ||
Sbjct 142642 GAAGGCGAACGACCAATGACCAAAGACAATCATCTTCTTGGGAAATTTGATCTGACCGGC 142583
Query 476093 ATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAAT 476152
|| ||||| ||||| | || || || |||||||||||||| || ||||| || | ||
Sbjct 142582 ATACCTCCGGCTCCGCGTGGGGTACCACAAATTGAAGTTACATTCGATATCGACGTGAAC 142523
Query 476153 GGTATT 476158
|| |||
Sbjct 142522 GGCATT 142517
>seq2524
Length=468
Score = 111 bits (122), Expect = 1e-18
Identities = 109/138 (79%), Gaps = 2/138 (1%)
Strand=Plus/Plus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
||||||||||| |||||||| ||||| || ||||||||||| || |||||||| || |
Sbjct 233 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 292
Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751
|| ||| || || ||||||| || | | || ||| ||| || ||||| ||||| ||
Sbjct 293 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAA-GGTGATCGTTTTGCCGGTAAG 351
Query 480752 AGTCTTAACGAAAATTTG 480769
||||||||| ||||||||
Sbjct 352 AGTCTTAACAAAAATTTG 369
>seq21
Length=314379
Score = 96.9 bits (106), Expect = 2e-14
Identities = 143/200 (72%), Gaps = 2/200 (1%)
Strand=Plus/Minus
Query 296075 TTGGAAGATGGATTGATATTAATAATGAATATAAAACAATGGATAAAAATTTTATGGAAT 296134
|||| ||||||| ||| |||| ||||| |||||||| | || || ||| |||||||
Sbjct 175238 TTGGTCGATGGATAGATTTTAAAAATGACTATAAAACTTTATATCCAAGTTTCATGGAAT 175179
Query 296135 CTGTTATTTGGTCATTTAAACAACTTTATGA-AAAGGAAATGATTTTTGAAGGTTATAAA 296193
|||| ||| ||| ||||| || ||| | ||||| || | | |||| |||
Sbjct 175178 CTGTATGGTGGGTATTCAAACAGCTGTATAACAAAGGTCTTG-TCTACAGAGGTGTAAAA 175120
Query 296194 GTTATGCCTTATTCTACTGGTTGCAATACACCATTATCTCATTTTGAGGCAAAACAAAAT 296253
|| ||||| | |||||||| |||| || ||||| || ||||||| | |||||||
Sbjct 175119 GTGATGCCATTTTCTACTGCTTGCGGGACTCCATTGTCAAATTTTGAATCTGGACAAAAT 175060
Query 296254 TATAAAGAGATTATTGATCC 296273
|| ||||| | ||||||||
Sbjct 175059 TACAAAGAAGTCATTGATCC 175040
>seq72
Length=186561
Score = 93.3 bits (102), Expect = 3e-13
Identities = 119/164 (73%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 299114 GAAGAAGAGATTAAAAAAGCTTATAAAAAATTAGCTATGAAATATCATCCTGACAGAAAT 299173
||||| || || |||||||||||| || | || |||||||||||||||||| ||
Sbjct 173309 GAAGATGAAATCAAAAAAGCTTATCGGAAGATGGCGTTGAAATATCATCCTGACAAGAAC 173250
Query 299174 AAAAGTCCTGAAGCGGAAGAAAAGTTTaaaaaaaTAAGTCATGCTTATAGTATTCTTTCA 299233
||||| ||||| || ||| ||||||||| | || | || || | ||||
Sbjct 173249 AAAAGCCCTGACGCAGAAAGCAAGTTTAAAGAGATTGCAGAAGCATACGATGTTCTGAGT 173190
Query 299234 GATCCAACCAAAAAAGAAGTATATGATAAATTTGGAGAAGAAGG 299277
||| | | || |||||| |||| ||||||||||| ||||||||
Sbjct 173189 GATGCTAAAAAGAAAGAAATATACGATAAATTTGGTGAAGAAGG 173146
>seq95
Length=149630
Score = 91.5 bits (100), Expect = 1e-12
Identities = 74/90 (82%), Gaps = 0/90 (0%)
Strand=Plus/Minus
Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149
||||| ||||| || || | |||||||| ||||| ||||||||||||||||| ||||||
Sbjct 15782 GGTATACCTCCGGCCCCTCGTGGAGTTCCACAAATAGAAGTTACTTTTGATATCGATGCA 15723
Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGAT 476179
|||||||| || |||| | |||| | |||
Sbjct 15722 AATGGTATAGTTCATGTCAGTGCTCGAGAT 15693
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3267923932735748
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |