Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24]
5,951 sequences; 50,853,738 total letters
Query= NC_020864.1
Length=205622
Score E
Sequences producing significant alignments: (Bits) Value
seq282 306 5e-78
seq117 136 5e-27
seq1863 134 2e-26
seq332 134 2e-26
seq326 134 2e-26
seq2524 131 2e-25
seq69 122 1e-22
seq5215 109 7e-19
seq6 100 4e-16
>seq282
Length=46907
Score = 306 bits (338), Expect = 5e-78
Identities = 485/692 (70%), Gaps = 9/692 (1%)
Strand=Plus/Plus
Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358
|||||||| || ||||| || ||||| ||| |||||||| || | || ||| |
Sbjct 11257 GCTATTGGAATTGATTTGGGTACTACGTACAGTTGTGTTGGCGTGTTCCAGCATGGTAAA 11316
Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418
|| || ||||| | || || ||||| || ||||| || ||| || ||||| || ||
Sbjct 11317 GTTGAAATTATTGCCAACGATCAAGGGAATCGTACCACGCCAAGTTATGTTGCTTTCACC 11376
Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478
|||| ||||| || |||||||||| ||||||||||| || |||| ||| |||
Sbjct 11377 GATACCGAACGACTGATTGGAGATGCGGCAAAAAATCAAGTTGCGTTGAATCCTCATAAT 11436
Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538
|| || ||||| |||||||| || || ||||| ||| ||| || ||
Sbjct 11437 ACAGTTTTTGATGCGAAGCGACTCATCGGTCGTCGATTTGATGATGCTGCGGTGCAGTCT 11496
Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGAT--AAGCCTATGATTA 195596
||||| || | ||| | | || || | || || ||| || |||| |||
Sbjct 11497 GATATGAAACATTGGCCATTCAAAATTATCAACGATG-----GATCGAAACCTAAAATTC 11551
Query 195597 ATGTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGT 195656
| || |||| | || ||| ||| |||| | || |||||||| |||||||||
Sbjct 11552 AAGTCGAATACAAAGGCGAGTCGAAGTCATTTACACCAGAAGAAATCAGTGCTATGGTGT 11611
Query 195657 TGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTG 195716
| | ||||||||||| ||||| ||| ||| |||| |||||||| || ||||| ||
Sbjct 11612 TAGTGAAGATGAAGGAAACTGCCGAAGCTTATTTGGGAAAAACTGTTAAGGATGCCGTAA 11671
Query 195717 TGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTA 195776
| ||||| || || || || | ||||| || || |||||||| || ||||||| | |
Sbjct 11672 TTACTGTTCCGGCATATTTTAACGATTCTCAGCGTCAGGCGACCAAAGACGCTGGAACGA 11731
Query 195777 TTGCGGGTCTAAACTGTCTT-AGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTAT 195835
|| | ||| | || ||| || | || ||||| |||||||||||||||||||||||||||
Sbjct 11732 TTTCTGGTTTGAA-TGTTTTGCGTATCATCAACGAACCAACAGCGGCTGCAATTGCTTAT 11790
Query 195836 GGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGT 195895
|| || || | || | || || |||||| |||| ||||| || |||||||||
Sbjct 11791 GGACTTGATAGAAAGGGTGGCGGTGAACGAAATGTTCTGATATTTGACCTTGGTGGTGGT 11850
Query 195896 ACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCT 195955
|| |||||||| || || | | || |||| ||| || || || || ||| |||| |||
Sbjct 11851 ACTTTTGATGTGTCTATTTTGACCATCGAAGATGGCATTTTTGAGGTCAAGTCTACCGCT 11910
Query 195956 GGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987
||||| |||||| | |||||||| || |||||
Sbjct 11911 GGTGACACTCATTTGGGTGGTGAGGACTTCGA 11942
>seq117
Length=123509
Score = 136 bits (150), Expect = 5e-27
Identities = 117/145 (81%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 171860 GTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGT 171919
||||||| || ||||||||||| | ||||||||||| ||||| | || || ||| | |
Sbjct 9445 GTATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCAT 9386
Query 171920 CAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATC 171979
|||| || || || || | ||| || |||||||||||||||||||||||||| ||||
Sbjct 9385 CAGATACGATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATC 9326
Query 171980 AGCAACGACTTATTTTTGCTGGTAA 172004
|||||||| | || |||||||||||
Sbjct 9325 AGCAACGATTGATATTTGCTGGTAA 9301
Score = 134 bits (148), Expect = 2e-26
Identities = 116/144 (81%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 171860 GTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGT 171919
||||||| || ||||||||||| | ||||||||||| ||||| | || || ||| | |
Sbjct 9731 GTATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCAT 9672
Query 171920 CAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATC 171979
|||| || || || || | ||| || |||||||||||||||||||||||||| ||||
Sbjct 9671 CAGATACGATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATC 9612
Query 171980 AGCAACGACTTATTTTTGCTGGTA 172003
|||||||| | || ||||||||||
Sbjct 9611 AGCAACGATTGATATTTGCTGGTA 9588
Score = 129 bits (142), Expect = 8e-25
Identities = 115/144 (80%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 171861 TATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTC 171920
|||||| || || ||||| || ||||||||||||||||| || || || ||||| | ||
Sbjct 10412 TATGCAGATATTCGTGAAGACACTTACTGGAAAAACTATAACACTAGAAGTTGAACCATC 10353
Query 171921 AGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCA 171980
|||||| ||||| || | ||| || ||||| ||||||||||||||||| || |||||
Sbjct 10352 AGACACCATCGAAAATGTTAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTCCTGATCA 10293
Query 171981 GCAACGACTTATTTTTGCTGGTAA 172004
|||| || | || ||||| |||||
Sbjct 10292 GCAAAGATTAATCTTTGCAGGTAA 10269
Score = 127 bits (140), Expect = 3e-24
Identities = 114/143 (80%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||| || ||||||||||| | ||||||||||| ||||| | || || ||| | ||
Sbjct 9156 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCT 9097
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| || || || || | ||| || |||||||||||||||||||||||||| ||||||
Sbjct 9096 GATACGATTGAAAATGTAAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCAG 9037
Query 171982 CAACGACTTATTTTTGCTGGTAA 172004
|||||| | || |||||||||||
Sbjct 9036 CAACGATTGATATTTGCTGGTAA 9014
Score = 125 bits (138), Expect = 9e-24
Identities = 113/142 (80%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||| || ||||||||||| | ||||||||||| ||||| | || || ||| | ||
Sbjct 8869 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCT 8810
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| || || || || | ||| || |||||||||||||||||||||||||| ||||||
Sbjct 8809 GATACGATTGAAAATGTAAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCAG 8750
Query 171982 CAACGACTTATTTTTGCTGGTA 172003
|||||| | || ||||||||||
Sbjct 8749 CAACGATTGATATTTGCTGGTA 8728
>seq1863
Length=625
Score = 134 bits (148), Expect = 2e-26
Identities = 115/142 (81%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||| ||||| || || ||||| || ||||| |||||| | || || ||| | ||
Sbjct 7 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAGCCATCT 66
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | |||| ||| ||||||||||| ||||| |||||||| ||||||
Sbjct 67 GATACAATAGAAAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAG 126
Query 171982 CAACGACTTATTTTTGCTGGTA 172003
||||| || |||||||||||||
Sbjct 127 CAACGTCTGATTTTTGCTGGTA 148
Score = 131 bits (144), Expect = 2e-25
Identities = 114/142 (80%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||| ||||| || || ||||| || ||||| |||||| | || || || | ||
Sbjct 290 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 349
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | |||| ||| ||||||||||| ||||| |||||||| ||||||
Sbjct 350 GATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAG 409
Query 171982 CAACGACTTATTTTTGCTGGTA 172003
||||| || |||||||||||||
Sbjct 410 CAACGTCTGATTTTTGCTGGTA 431
>seq332
Length=28044
Score = 134 bits (148), Expect = 2e-26
Identities = 115/142 (81%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||| || ||||||||||| | || |||||||| || || || || |||||| |||||
Sbjct 1253 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 1194
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | ||| |||||||||||| || |||||||| ||||| |||||
Sbjct 1193 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCAGATCAA 1134
Query 171982 CAACGACTTATTTTTGCTGGTA 172003
|| || ||||||||||||||||
Sbjct 1133 CAGCGGCTTATTTTTGCTGGTA 1112
Score = 131 bits (144), Expect = 2e-25
Identities = 114/142 (80%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||| ||||| || || ||||| || ||||| |||||| | || || || | ||
Sbjct 336 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 277
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | |||| ||| ||||||||||| ||||| |||||||| ||||||
Sbjct 276 GATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAG 217
Query 171982 CAACGACTTATTTTTGCTGGTA 172003
||||| || |||||||||||||
Sbjct 216 CAACGTCTGATTTTTGCTGGTA 195
Score = 131 bits (144), Expect = 2e-25
Identities = 114/142 (80%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||| ||||| || || ||||| || ||||| |||||| | || || || | ||
Sbjct 619 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 560
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | |||| ||| ||||||||||| ||||| |||||||| ||||||
Sbjct 559 GATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAG 500
Query 171982 CAACGACTTATTTTTGCTGGTA 172003
||||| || |||||||||||||
Sbjct 499 CAACGTCTGATTTTTGCTGGTA 478
Score = 122 bits (134), Expect = 1e-22
Identities = 112/142 (79%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||| || || || || ||||| || ||||| |||||| | || || || | ||
Sbjct 27079 ATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 27020
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | |||| ||| || || ||||||||||| |||||||| ||||||
Sbjct 27019 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCAGATCAG 26960
Query 171982 CAACGACTTATTTTTGCTGGTA 172003
||||| || |||||||||||||
Sbjct 26959 CAACGTCTGATTTTTGCTGGTA 26938
Score = 118 bits (130), Expect = 1e-21
Identities = 112/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||| ||||| || || ||||| || ||||| |||||| | || || || | ||
Sbjct 26796 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 26737
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | |||| || || || ||||||||||| |||||||| ||||||
Sbjct 26736 GATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAG 26677
Query 171982 CAACGACTTATTTTTGCTGGTAA 172004
||||| | ||||||||||||||
Sbjct 26676 CAACGTTTGATTTTTGCTGGTAA 26654
Score = 118 bits (130), Expect = 1e-21
Identities = 116/150 (77%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||| ||||| || || ||||| || ||||| |||||| | || || || | ||
Sbjct 27638 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 27579
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | |||| || || || ||||||||||| |||||||| |||||
Sbjct 27578 GATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 27519
Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTT 172011
||||| | |||||||||||||| ||| ||
Sbjct 27518 CAACGTTTGATTTTTGCTGGTAAGCAGTTT 27489
Score = 109 bits (120), Expect = 7e-19
Identities = 110/143 (77%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||| || ||||| ||||| || || || ||||| || || || || || || | |||
Sbjct 1585 ATGCAGATATTTGTCAAAACTCTGACCGGGAAAACCATTACTCTGGAAGTGGAACCCTCA 1526
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|||||| | || || | || | || ||||| ||||| || || ||||||||||||||
Sbjct 1525 GACACAGTTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAA 1466
Query 171982 CAACGACTTATTTTTGCTGGTAA 172004
||||| || ||||||||||||||
Sbjct 1465 CAACGTCTGATTTTTGCTGGTAA 1443
Score = 109 bits (120), Expect = 7e-19
Identities = 110/143 (77%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||| || ||||| ||||| || || || ||||| || || || || || || | |||
Sbjct 17942 ATGCAGATATTTGTCAAAACTCTGACCGGGAAAACCATTACTCTGGAAGTGGAACCCTCA 17883
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|||||| | || || | || | || ||||| ||||| || || ||||||||||||||
Sbjct 17882 GACACAGTTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAA 17823
Query 171982 CAACGACTTATTTTTGCTGGTAA 172004
||||| || ||||||||||||||
Sbjct 17822 CAACGTCTGATTTTTGCTGGTAA 17800
Score = 109 bits (120), Expect = 7e-19
Identities = 110/143 (77%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||| ||||| || || ||||| || ||||| |||||| | || || || | ||
Sbjct 27359 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 27300
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | |||| || || || ||||||||||| |||||||| |||||
Sbjct 27299 GATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 27240
Query 171982 CAACGACTTATTTTTGCTGGTAA 172004
|| || | ||||||||||||||
Sbjct 27239 CAGCGTTTGATTTTTGCTGGTAA 27217
Score = 109 bits (120), Expect = 7e-19
Identities = 114/150 (76%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||| ||||| || || |||||||| ||||| ||||| | || || || | ||
Sbjct 27917 ATGCAAATTTTTGTTAAGACTCTTACTGGGAAAACCATCACGTTGGAAGTAGAACCATCT 27858
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | |||| || || |||||||| || || ||||| || |||||
Sbjct 27857 GATACAATAGAAAATGTGAAAGGAAAAATACAAGATAAAGAGGGAATTCCTCCGGATCAA 27798
Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTT 172011
||||| | |||||||||||||| ||| ||
Sbjct 27797 CAACGTTTGATTTTTGCTGGTAAGCAGTTT 27768
Score = 107 bits (118), Expect = 3e-18
Identities = 109/142 (77%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||| || || || || ||||| || ||||| |||||| | || || || | ||
Sbjct 26514 ATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 26455
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | |||| ||| || || ||||| || || |||||||| ||||||
Sbjct 26454 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAAGAGGGAATTCCACCAGATCAG 26395
Query 171982 CAACGACTTATTTTTGCTGGTA 172003
||||| | |||||||||||||
Sbjct 26394 CAACGTTTGATTTTTGCTGGTA 26373
>seq326
Length=30629
Score = 134 bits (148), Expect = 2e-26
Identities = 115/142 (81%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||| || ||||||||||| | || |||||||| || || || || |||||| |||||
Sbjct 19576 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 19517
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | ||| |||||||||||| || |||||||| ||||| |||||
Sbjct 19516 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCAGATCAA 19457
Query 171982 CAACGACTTATTTTTGCTGGTA 172003
|| || ||||||||||||||||
Sbjct 19456 CAGCGGCTTATTTTTGCTGGTA 19435
Score = 125 bits (138), Expect = 9e-24
Identities = 113/142 (80%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||| || || || || ||||| || ||||| |||||| | || || || | ||
Sbjct 17817 ATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 17758
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | |||| ||| ||||||||||| ||||| |||||||| ||||||
Sbjct 17757 GATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAG 17698
Query 171982 CAACGACTTATTTTTGCTGGTA 172003
||||| || |||||||||||||
Sbjct 17697 CAACGTCTGATTTTTGCTGGTA 17676
Score = 122 bits (134), Expect = 1e-22
Identities = 112/142 (79%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||| ||||| || || || || || ||||| ||||| | || || || | ||
Sbjct 18662 ATGCAAATTTTTGTTAAGACTCTCACCGGCAAAACCATCACATTGGAAGTAGAACCATCT 18603
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | |||| ||| ||||||||||| ||||| |||||||| ||||||
Sbjct 18602 GATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAG 18543
Query 171982 CAACGACTTATTTTTGCTGGTA 172003
||||| || |||||||||||||
Sbjct 18542 CAACGTCTGATTTTTGCTGGTA 18521
Score = 118 bits (130), Expect = 1e-21
Identities = 112/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||| || ||||||||||| || ||||| ||||| || || || || || || | ||
Sbjct 19908 ATGCAGATATTTGTGAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAACCCTCT 19849
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|||||||| || || | || | || ||||| ||||| || || ||||||||||||||
Sbjct 19848 GACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAA 19789
Query 171982 CAACGACTTATTTTTGCTGGTAA 172004
||||| || ||||||||||||||
Sbjct 19788 CAACGTCTGATTTTTGCTGGTAA 19766
Score = 113 bits (124), Expect = 6e-20
Identities = 115/150 (77%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||| || || || ||||||||||||||||| || || | || || || | ||
Sbjct 18097 ATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 18038
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | |||| || || || ||||||||||| |||||||| |||||
Sbjct 18037 GATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 17978
Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTT 172011
||||| | |||||||||||| | ||| ||
Sbjct 17977 CAACGTTTGATTTTTGCTGGTGAGCAGTTT 17948
Score = 113 bits (124), Expect = 6e-20
Identities = 115/150 (77%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||| || || || ||||||||||||||||| || || | || || || | ||
Sbjct 18942 ATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 18883
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | |||| || || || ||||||||||| |||||||| |||||
Sbjct 18882 GATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 18823
Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTT 172011
||||| | |||||||||||| | ||| ||
Sbjct 18822 CAACGTTTGATTTTTGCTGGTGAGCAGTTT 18793
Score = 109 bits (120), Expect = 7e-19
Identities = 110/143 (77%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||| || ||||| || || ||||| || ||||| |||||| | || || || | ||
Sbjct 18379 ATGCAGATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 18320
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | |||| || || || ||||||||||| |||||||| |||||
Sbjct 18319 GATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 18260
Query 171982 CAACGACTTATTTTTGCTGGTAA 172004
||||| | ||||||||||||||
Sbjct 18259 CAACGTTTGATTTTTGCTGGTAA 18237
Score = 98.7 bits (108), Expect = 1e-15
Identities = 107/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||| || ||||| || ||||| ||||| ||||| ||||| | || || || | ||
Sbjct 17534 ATGCAGATTTTTGTTAAGACCCTAACTGGGAAAACCATCACGTTGGAAGTGGAACCATCT 17475
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| || | || || | |||| ||||||||||||||||| || ||||| || |||||
Sbjct 17474 GATACTGTTGAGAATGTGAAAGGGAAGATTCAAGATAAGGAGGGAATTCCTCCAGATCAA 17415
Query 171982 CAACGACTTATTTTTGCTGGTA 172003
|| || | |||||||||||||
Sbjct 17414 CAGCGTTTGATTTTTGCTGGTA 17393
>seq2524
Length=468
Score = 131 bits (144), Expect = 2e-25
Identities = 114/142 (80%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||| ||||| || || ||||| || ||||| |||||| | || || || | ||
Sbjct 372 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 313
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | |||| ||| ||||||||||| ||||| |||||||| ||||||
Sbjct 312 GATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAG 253
Query 171982 CAACGACTTATTTTTGCTGGTA 172003
||||| || |||||||||||||
Sbjct 252 CAACGTCTGATTTTTGCTGGTA 231
>seq69
Length=193012
Score = 122 bits (134), Expect = 1e-22
Identities = 318/484 (66%), Gaps = 6/484 (1%)
Strand=Plus/Minus
Query 195333 GTGTTGGTGTATGGCAAAATGATCGTGTAGAGATTATCCCGAATGACCAAGGAAACCGTA 195392
||||||| || | | |||| |||||| || ||||| | ||||| || || || || |
Sbjct 144102 GTGTTGGGGTTTTCAAGAATGGTCGTGTTGAAATTATTGCTAATGATCAGGGCAATCGAA 144043
Query 195393 CAACTCCATCGTACGTTGCCTTTACA---GATAATGAACGTCTCGTTGGAGATGCCGCAA 195449
|| || ||||| || || ||||| || || ||||| | || || ||||| |
Sbjct 144042 TCACCCCGTCGTATGTAGCTTTTACGCCGGAAGGGGAGCGTCTGATCGGCGACGCCGCGA 143983
Query 195450 AAAATCAGACAGCTATGAACCCTATCAATACTGTCTTTGACGCGAAGCGTCTTATTGGTC 195509
|||||||| | | || ||| ||||| || || || || |||||| | | ||||
Sbjct 143982 AAAATCAGTTGACCACCAATCCTGAGAATACGGTATTCGATGCAAAGCGTATGGTCGGTC 143923
Query 195510 GCAAGTTTTCGGATAAGAAAGTCCAAGACGATATAAAGGACTGGTCTTATGAAGTTGTTC 195569
| | | |||||||||| | |||| ||| || ||| | | || || |||
Sbjct 143922 GAGAATGGTCGGATAAGAGTCTTCAAGCGGATCGTAAAATGTGGCCATTTGCGGTGGTT- 143864
Query 195570 CCGGTGTGGCTGATAAGCCTATGATTAATGTTGAATTTCACGGTGAGAAGAAACAATTTG 195629
| | || || | || | || || ||||||| |||||| ||
Sbjct 143863 --GAAAAATCGAGCAAACCGAACGTTCAGCTTACTGTTAACGGTGAAAAGAAATTGTTCA 143806
Query 195630 CTCCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCA 195689
|||||||||||||||| | ||||| ||| | || ||||| || | ||| || |||
Sbjct 143805 CTCCCGAAGAAATTTCAGCGATGGTTTTGTTGAAAATGAAAGAAATTGCCGAGGCTTATT 143746
Query 195690 TGGGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAAC 195749
|||| ||| |||||| |||| || || || || || ||||| |||| ||| ||||||
Sbjct 143745 TGGGCAAAGAAGTGAAAAATGCCGTCGTCACGGTTCCAGCTTATTTCAACGATGCACAAC 143686
Query 195750 GACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATG 195809
| || || || || || || | | ||||| ||||| || | || |||| ||||| |
Sbjct 143685 GTCAAGCTACCAAAGATGCAGGCACCATTGCTGGTCTTAATGTTGTTCGAATCATCAACG 143626
Query 195810 AACC 195813
||||
Sbjct 143625 AACC 143622
Score = 102 bits (112), Expect = 1e-16
Identities = 326/502 (65%), Gaps = 8/502 (2%)
Strand=Plus/Minus
Query 196373 ATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGT 196432
||||| || || ||||| || || || ||||| || || ||||||| || | || |||
Sbjct 142879 ATCAATCCAGACGAAGCTGTCGCCTACGGTGCTGCGGTCCAGGCTGGCGTTATTTCCGGT 142820
Query 196433 GTTGACAATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGT 196492
| || ||| | || |||||| |||| | || || || | | ||||
Sbjct 142819 GAAGAAGATACTG--GT----GATCTTGTGCTGTTGGACGTCAATCCGTTGACTTTGGGA 142766
Query 196493 CTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACT 196552
||||||| | || || || ||||| || | ||| ||||| || | |||||
Sbjct 142765 ATTGAAACTGTCGGCGGAGTGATGACGAAGCTGATTCCCAGGAATACGGTAGTGCCGACC 142706
Query 196553 AAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGTA 196612
||||| || | || || | |||| ||||| || ||| |||||||||
Sbjct 142705 AAGAAATCCCAGATATTCAGCACCGCTGCCGACAATCAGCCCACAGTTACTATTCAAGTT 142646
Query 196613 TATGAAGGAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACTTTCGATTTGAC 196671
| ||||| ||||| || || | || || || ||||| ||||| | || ||| ||||
Sbjct 142645 TTCGAAGGCGAACGA-CCAATGACCAAAGACAATCATCTTCTTGGGAAATTTGATCTGAC 142587
Query 196672 GGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGC 196731
|| || || | || || | || || ||||| ||| | ||| |||||||| ||||
Sbjct 142586 CGGCATACCTCCGGCTCCGCGTGGGGTACCACAAATTGAAGTTACATTCGATATCGACGT 142527
Query 196732 AAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATTGT 196791
|| || ||| | ||||||| || || ||||| | | | ||||| | |||||
Sbjct 142526 GAACGGCATTTTGCACGTCACCGCCGAAGACAAAGGTACCGGCAACAAGAACAAGATCAC 142467
Query 196792 GATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAGATGC 196851
||||||||||| | || || || ||| || ||||| || ||| | | |||||
Sbjct 142466 CATTACCAATGATCACAATCGTCTGTCGCCGGAAGATATTGACCGCATGATCAACGATGC 142407
Query 196852 GGAAAAGTACAGGGAAGAAGAC 196873
||||| || |||||| |||
Sbjct 142406 CGAAAAATATGCGGAAGAGGAC 142385
Score = 93.3 bits (102), Expect = 6e-14
Identities = 117/160 (73%), Gaps = 3/160 (2%)
Strand=Plus/Minus
Query 195814 AACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATT 195873
||| || ||||||||||| || ||||||||||| || ||| ||| |||||| | ||
Sbjct 143569 AACTGCTGCTGCAATTGCATACGGTCTGGACAAAAAGGAGGGTGAA---AAAAATATTTT 143513
Query 195874 GATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTAT 195933
| | ||||| || ||||| |||||||| || | | || | |||||| |||| |
Sbjct 143512 AGTTTACGATCTTGGAGGTGGAACGTTTGACGTTACTTTGCTTACTATTGACAATGGTGT 143453
Query 195934 ATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGT 195973
|||||||| | ||||| ||||||||||||| | |||
Sbjct 143452 TTTCGAAGTGCTGTCTACTAATGGTGATACTCATTTGGGT 143413
>seq5215
Length=241
Score = 109 bits (120), Expect = 7e-19
Identities = 110/143 (77%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||| ||||| || || ||||| || ||||| |||||| | || || ||| | ||
Sbjct 235 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAGCCATCT 176
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | |||| || || |||||||| || || ||||| || |||||
Sbjct 175 GATACAATAGAAAATGTGAAAGGAAAAATACAAGATAAAGAGGGAATTCCTCCGGATCAA 116
Query 171982 CAACGACTTATTTTTGCTGGTAA 172004
||||| | ||||||||||||||
Sbjct 115 CAACGTTTGATTTTTGCTGGTAA 93
>seq6
Length=459386
Score = 100 bits (110), Expect = 4e-16
Identities = 77/90 (86%), Gaps = 1/90 (1%)
Strand=Plus/Plus
Query 171963 AGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACG 172022
||| |||||||| |||||||| ||||| ||||||||||| ||||||||||||||||||||
Sbjct 122501 AGGGATTCCACCTGATCAGCAGCGACTGATTTTTGCTGGAAAACAGCTTGAAGATGGACG 122560
Query 172023 TACCCTCGCTGATTACAACGTTCA-AAAGG 172051
||| | | |||||||| |||| |||||
Sbjct 122561 TACTTTGTCCGATTACAATATTCAGAAAGG 122590
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657813463260720
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