Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24] 5,951 sequences; 50,853,738 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq282 306 5e-78 seq117 136 5e-27 seq1863 134 2e-26 seq332 134 2e-26 seq326 134 2e-26 seq2524 131 2e-25 seq69 122 1e-22 seq5215 109 7e-19 seq6 100 4e-16 >seq282 Length=46907 Score = 306 bits (338), Expect = 5e-78 Identities = 485/692 (70%), Gaps = 9/692 (1%) Strand=Plus/Plus Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358 |||||||| || ||||| || ||||| ||| |||||||| || | || ||| | Sbjct 11257 GCTATTGGAATTGATTTGGGTACTACGTACAGTTGTGTTGGCGTGTTCCAGCATGGTAAA 11316 Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 || || ||||| | || || ||||| || ||||| || ||| || ||||| || || Sbjct 11317 GTTGAAATTATTGCCAACGATCAAGGGAATCGTACCACGCCAAGTTATGTTGCTTTCACC 11376 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478 |||| ||||| || |||||||||| ||||||||||| || |||| ||| ||| Sbjct 11377 GATACCGAACGACTGATTGGAGATGCGGCAAAAAATCAAGTTGCGTTGAATCCTCATAAT 11436 Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538 || || ||||| |||||||| || || ||||| ||| ||| || || Sbjct 11437 ACAGTTTTTGATGCGAAGCGACTCATCGGTCGTCGATTTGATGATGCTGCGGTGCAGTCT 11496 Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGAT--AAGCCTATGATTA 195596 ||||| || | ||| | | || || | || || ||| || |||| ||| Sbjct 11497 GATATGAAACATTGGCCATTCAAAATTATCAACGATG-----GATCGAAACCTAAAATTC 11551 Query 195597 ATGTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGT 195656 | || |||| | || ||| ||| |||| | || |||||||| ||||||||| Sbjct 11552 AAGTCGAATACAAAGGCGAGTCGAAGTCATTTACACCAGAAGAAATCAGTGCTATGGTGT 11611 Query 195657 TGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTG 195716 | | ||||||||||| ||||| ||| ||| |||| |||||||| || ||||| || Sbjct 11612 TAGTGAAGATGAAGGAAACTGCCGAAGCTTATTTGGGAAAAACTGTTAAGGATGCCGTAA 11671 Query 195717 TGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTA 195776 | ||||| || || || || | ||||| || || |||||||| || ||||||| | | Sbjct 11672 TTACTGTTCCGGCATATTTTAACGATTCTCAGCGTCAGGCGACCAAAGACGCTGGAACGA 11731 Query 195777 TTGCGGGTCTAAACTGTCTT-AGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTAT 195835 || | ||| | || ||| || | || ||||| ||||||||||||||||||||||||||| Sbjct 11732 TTTCTGGTTTGAA-TGTTTTGCGTATCATCAACGAACCAACAGCGGCTGCAATTGCTTAT 11790 Query 195836 GGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGT 195895 || || || | || | || || |||||| |||| ||||| || ||||||||| Sbjct 11791 GGACTTGATAGAAAGGGTGGCGGTGAACGAAATGTTCTGATATTTGACCTTGGTGGTGGT 11850 Query 195896 ACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCT 195955 || |||||||| || || | | || |||| ||| || || || || ||| |||| ||| Sbjct 11851 ACTTTTGATGTGTCTATTTTGACCATCGAAGATGGCATTTTTGAGGTCAAGTCTACCGCT 11910 Query 195956 GGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 ||||| |||||| | |||||||| || ||||| Sbjct 11911 GGTGACACTCATTTGGGTGGTGAGGACTTCGA 11942 >seq117 Length=123509 Score = 136 bits (150), Expect = 5e-27 Identities = 117/145 (81%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 171860 GTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGT 171919 ||||||| || ||||||||||| | ||||||||||| ||||| | || || ||| | | Sbjct 9445 GTATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCAT 9386 Query 171920 CAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATC 171979 |||| || || || || | ||| || |||||||||||||||||||||||||| |||| Sbjct 9385 CAGATACGATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATC 9326 Query 171980 AGCAACGACTTATTTTTGCTGGTAA 172004 |||||||| | || ||||||||||| Sbjct 9325 AGCAACGATTGATATTTGCTGGTAA 9301 Score = 134 bits (148), Expect = 2e-26 Identities = 116/144 (81%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 171860 GTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGT 171919 ||||||| || ||||||||||| | ||||||||||| ||||| | || || ||| | | Sbjct 9731 GTATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCAT 9672 Query 171920 CAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATC 171979 |||| || || || || | ||| || |||||||||||||||||||||||||| |||| Sbjct 9671 CAGATACGATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATC 9612 Query 171980 AGCAACGACTTATTTTTGCTGGTA 172003 |||||||| | || |||||||||| Sbjct 9611 AGCAACGATTGATATTTGCTGGTA 9588 Score = 129 bits (142), Expect = 8e-25 Identities = 115/144 (80%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 171861 TATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTC 171920 |||||| || || ||||| || ||||||||||||||||| || || || ||||| | || Sbjct 10412 TATGCAGATATTCGTGAAGACACTTACTGGAAAAACTATAACACTAGAAGTTGAACCATC 10353 Query 171921 AGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCA 171980 |||||| ||||| || | ||| || ||||| ||||||||||||||||| || ||||| Sbjct 10352 AGACACCATCGAAAATGTTAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTCCTGATCA 10293 Query 171981 GCAACGACTTATTTTTGCTGGTAA 172004 |||| || | || ||||| ||||| Sbjct 10292 GCAAAGATTAATCTTTGCAGGTAA 10269 Score = 127 bits (140), Expect = 3e-24 Identities = 114/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || ||||||||||| | ||||||||||| ||||| | || || ||| | || Sbjct 9156 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCT 9097 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || || || || | ||| || |||||||||||||||||||||||||| |||||| Sbjct 9096 GATACGATTGAAAATGTAAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCAG 9037 Query 171982 CAACGACTTATTTTTGCTGGTAA 172004 |||||| | || ||||||||||| Sbjct 9036 CAACGATTGATATTTGCTGGTAA 9014 Score = 125 bits (138), Expect = 9e-24 Identities = 113/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || ||||||||||| | ||||||||||| ||||| | || || ||| | || Sbjct 8869 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCT 8810 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || || || || | ||| || |||||||||||||||||||||||||| |||||| Sbjct 8809 GATACGATTGAAAATGTAAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCAG 8750 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 |||||| | || |||||||||| Sbjct 8749 CAACGATTGATATTTGCTGGTA 8728 >seq1863 Length=625 Score = 134 bits (148), Expect = 2e-26 Identities = 115/142 (81%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| || || ||||| || ||||| |||||| | || || ||| | || Sbjct 7 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAGCCATCT 66 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | |||| ||| ||||||||||| ||||| |||||||| |||||| Sbjct 67 GATACAATAGAAAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAG 126 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 ||||| || ||||||||||||| Sbjct 127 CAACGTCTGATTTTTGCTGGTA 148 Score = 131 bits (144), Expect = 2e-25 Identities = 114/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| || || ||||| || ||||| |||||| | || || || | || Sbjct 290 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 349 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | |||| ||| ||||||||||| ||||| |||||||| |||||| Sbjct 350 GATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAG 409 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 ||||| || ||||||||||||| Sbjct 410 CAACGTCTGATTTTTGCTGGTA 431 >seq332 Length=28044 Score = 134 bits (148), Expect = 2e-26 Identities = 115/142 (81%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || ||||||||||| | || |||||||| || || || || |||||| ||||| Sbjct 1253 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 1194 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | ||| |||||||||||| || |||||||| ||||| ||||| Sbjct 1193 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCAGATCAA 1134 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 || || |||||||||||||||| Sbjct 1133 CAGCGGCTTATTTTTGCTGGTA 1112 Score = 131 bits (144), Expect = 2e-25 Identities = 114/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| || || ||||| || ||||| |||||| | || || || | || Sbjct 336 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 277 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | |||| ||| ||||||||||| ||||| |||||||| |||||| Sbjct 276 GATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAG 217 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 ||||| || ||||||||||||| Sbjct 216 CAACGTCTGATTTTTGCTGGTA 195 Score = 131 bits (144), Expect = 2e-25 Identities = 114/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| || || ||||| || ||||| |||||| | || || || | || Sbjct 619 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 560 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | |||| ||| ||||||||||| ||||| |||||||| |||||| Sbjct 559 GATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAG 500 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 ||||| || ||||||||||||| Sbjct 499 CAACGTCTGATTTTTGCTGGTA 478 Score = 122 bits (134), Expect = 1e-22 Identities = 112/142 (79%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| || || || || ||||| || ||||| |||||| | || || || | || Sbjct 27079 ATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 27020 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | |||| ||| || || ||||||||||| |||||||| |||||| Sbjct 27019 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCAGATCAG 26960 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 ||||| || ||||||||||||| Sbjct 26959 CAACGTCTGATTTTTGCTGGTA 26938 Score = 118 bits (130), Expect = 1e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| || || ||||| || ||||| |||||| | || || || | || Sbjct 26796 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 26737 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | |||| || || || ||||||||||| |||||||| |||||| Sbjct 26736 GATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAG 26677 Query 171982 CAACGACTTATTTTTGCTGGTAA 172004 ||||| | |||||||||||||| Sbjct 26676 CAACGTTTGATTTTTGCTGGTAA 26654 Score = 118 bits (130), Expect = 1e-21 Identities = 116/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| || || ||||| || ||||| |||||| | || || || | || Sbjct 27638 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 27579 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | |||| || || || ||||||||||| |||||||| ||||| Sbjct 27578 GATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 27519 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTT 172011 ||||| | |||||||||||||| ||| || Sbjct 27518 CAACGTTTGATTTTTGCTGGTAAGCAGTTT 27489 Score = 109 bits (120), Expect = 7e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || ||||| ||||| || || || ||||| || || || || || || | ||| Sbjct 1585 ATGCAGATATTTGTCAAAACTCTGACCGGGAAAACCATTACTCTGGAAGTGGAACCCTCA 1526 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 |||||| | || || | || | || ||||| ||||| || || |||||||||||||| Sbjct 1525 GACACAGTTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAA 1466 Query 171982 CAACGACTTATTTTTGCTGGTAA 172004 ||||| || |||||||||||||| Sbjct 1465 CAACGTCTGATTTTTGCTGGTAA 1443 Score = 109 bits (120), Expect = 7e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || ||||| ||||| || || || ||||| || || || || || || | ||| Sbjct 17942 ATGCAGATATTTGTCAAAACTCTGACCGGGAAAACCATTACTCTGGAAGTGGAACCCTCA 17883 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 |||||| | || || | || | || ||||| ||||| || || |||||||||||||| Sbjct 17882 GACACAGTTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAA 17823 Query 171982 CAACGACTTATTTTTGCTGGTAA 172004 ||||| || |||||||||||||| Sbjct 17822 CAACGTCTGATTTTTGCTGGTAA 17800 Score = 109 bits (120), Expect = 7e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| || || ||||| || ||||| |||||| | || || || | || Sbjct 27359 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 27300 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | |||| || || || ||||||||||| |||||||| ||||| Sbjct 27299 GATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 27240 Query 171982 CAACGACTTATTTTTGCTGGTAA 172004 || || | |||||||||||||| Sbjct 27239 CAGCGTTTGATTTTTGCTGGTAA 27217 Score = 109 bits (120), Expect = 7e-19 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| || || |||||||| ||||| ||||| | || || || | || Sbjct 27917 ATGCAAATTTTTGTTAAGACTCTTACTGGGAAAACCATCACGTTGGAAGTAGAACCATCT 27858 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | |||| || || |||||||| || || ||||| || ||||| Sbjct 27857 GATACAATAGAAAATGTGAAAGGAAAAATACAAGATAAAGAGGGAATTCCTCCGGATCAA 27798 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTT 172011 ||||| | |||||||||||||| ||| || Sbjct 27797 CAACGTTTGATTTTTGCTGGTAAGCAGTTT 27768 Score = 107 bits (118), Expect = 3e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| || || || || ||||| || ||||| |||||| | || || || | || Sbjct 26514 ATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 26455 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | |||| ||| || || ||||| || || |||||||| |||||| Sbjct 26454 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAAGAGGGAATTCCACCAGATCAG 26395 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 ||||| | ||||||||||||| Sbjct 26394 CAACGTTTGATTTTTGCTGGTA 26373 >seq326 Length=30629 Score = 134 bits (148), Expect = 2e-26 Identities = 115/142 (81%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || ||||||||||| | || |||||||| || || || || |||||| ||||| Sbjct 19576 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 19517 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | ||| |||||||||||| || |||||||| ||||| ||||| Sbjct 19516 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCAGATCAA 19457 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 || || |||||||||||||||| Sbjct 19456 CAGCGGCTTATTTTTGCTGGTA 19435 Score = 125 bits (138), Expect = 9e-24 Identities = 113/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| || || || || ||||| || ||||| |||||| | || || || | || Sbjct 17817 ATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 17758 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | |||| ||| ||||||||||| ||||| |||||||| |||||| Sbjct 17757 GATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAG 17698 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 ||||| || ||||||||||||| Sbjct 17697 CAACGTCTGATTTTTGCTGGTA 17676 Score = 122 bits (134), Expect = 1e-22 Identities = 112/142 (79%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| || || || || || ||||| ||||| | || || || | || Sbjct 18662 ATGCAAATTTTTGTTAAGACTCTCACCGGCAAAACCATCACATTGGAAGTAGAACCATCT 18603 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | |||| ||| ||||||||||| ||||| |||||||| |||||| Sbjct 18602 GATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAG 18543 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 ||||| || ||||||||||||| Sbjct 18542 CAACGTCTGATTTTTGCTGGTA 18521 Score = 118 bits (130), Expect = 1e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || ||||||||||| || ||||| ||||| || || || || || || | || Sbjct 19908 ATGCAGATATTTGTGAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAACCCTCT 19849 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 |||||||| || || | || | || ||||| ||||| || || |||||||||||||| Sbjct 19848 GACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAA 19789 Query 171982 CAACGACTTATTTTTGCTGGTAA 172004 ||||| || |||||||||||||| Sbjct 19788 CAACGTCTGATTTTTGCTGGTAA 19766 Score = 113 bits (124), Expect = 6e-20 Identities = 115/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| || || || ||||||||||||||||| || || | || || || | || Sbjct 18097 ATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 18038 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | |||| || || || ||||||||||| |||||||| ||||| Sbjct 18037 GATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 17978 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTT 172011 ||||| | |||||||||||| | ||| || Sbjct 17977 CAACGTTTGATTTTTGCTGGTGAGCAGTTT 17948 Score = 113 bits (124), Expect = 6e-20 Identities = 115/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| || || || ||||||||||||||||| || || | || || || | || Sbjct 18942 ATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 18883 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | |||| || || || ||||||||||| |||||||| ||||| Sbjct 18882 GATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 18823 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTT 172011 ||||| | |||||||||||| | ||| || Sbjct 18822 CAACGTTTGATTTTTGCTGGTGAGCAGTTT 18793 Score = 109 bits (120), Expect = 7e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || ||||| || || ||||| || ||||| |||||| | || || || | || Sbjct 18379 ATGCAGATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 18320 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | |||| || || || ||||||||||| |||||||| ||||| Sbjct 18319 GATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 18260 Query 171982 CAACGACTTATTTTTGCTGGTAA 172004 ||||| | |||||||||||||| Sbjct 18259 CAACGTTTGATTTTTGCTGGTAA 18237 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || ||||| || ||||| ||||| ||||| ||||| | || || || | || Sbjct 17534 ATGCAGATTTTTGTTAAGACCCTAACTGGGAAAACCATCACGTTGGAAGTGGAACCATCT 17475 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || | || || | |||| ||||||||||||||||| || ||||| || ||||| Sbjct 17474 GATACTGTTGAGAATGTGAAAGGGAAGATTCAAGATAAGGAGGGAATTCCTCCAGATCAA 17415 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 || || | ||||||||||||| Sbjct 17414 CAGCGTTTGATTTTTGCTGGTA 17393 >seq2524 Length=468 Score = 131 bits (144), Expect = 2e-25 Identities = 114/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| || || ||||| || ||||| |||||| | || || || | || Sbjct 372 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 313 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | |||| ||| ||||||||||| ||||| |||||||| |||||| Sbjct 312 GATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAG 253 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 ||||| || ||||||||||||| Sbjct 252 CAACGTCTGATTTTTGCTGGTA 231 >seq69 Length=193012 Score = 122 bits (134), Expect = 1e-22 Identities = 318/484 (66%), Gaps = 6/484 (1%) Strand=Plus/Minus Query 195333 GTGTTGGTGTATGGCAAAATGATCGTGTAGAGATTATCCCGAATGACCAAGGAAACCGTA 195392 ||||||| || | | |||| |||||| || ||||| | ||||| || || || || | Sbjct 144102 GTGTTGGGGTTTTCAAGAATGGTCGTGTTGAAATTATTGCTAATGATCAGGGCAATCGAA 144043 Query 195393 CAACTCCATCGTACGTTGCCTTTACA---GATAATGAACGTCTCGTTGGAGATGCCGCAA 195449 || || ||||| || || ||||| || || ||||| | || || ||||| | Sbjct 144042 TCACCCCGTCGTATGTAGCTTTTACGCCGGAAGGGGAGCGTCTGATCGGCGACGCCGCGA 143983 Query 195450 AAAATCAGACAGCTATGAACCCTATCAATACTGTCTTTGACGCGAAGCGTCTTATTGGTC 195509 |||||||| | | || ||| ||||| || || || || |||||| | | |||| Sbjct 143982 AAAATCAGTTGACCACCAATCCTGAGAATACGGTATTCGATGCAAAGCGTATGGTCGGTC 143923 Query 195510 GCAAGTTTTCGGATAAGAAAGTCCAAGACGATATAAAGGACTGGTCTTATGAAGTTGTTC 195569 | | | |||||||||| | |||| ||| || ||| | | || || ||| Sbjct 143922 GAGAATGGTCGGATAAGAGTCTTCAAGCGGATCGTAAAATGTGGCCATTTGCGGTGGTT- 143864 Query 195570 CCGGTGTGGCTGATAAGCCTATGATTAATGTTGAATTTCACGGTGAGAAGAAACAATTTG 195629 | | || || | || | || || ||||||| |||||| || Sbjct 143863 --GAAAAATCGAGCAAACCGAACGTTCAGCTTACTGTTAACGGTGAAAAGAAATTGTTCA 143806 Query 195630 CTCCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCA 195689 |||||||||||||||| | ||||| ||| | || ||||| || | ||| || ||| Sbjct 143805 CTCCCGAAGAAATTTCAGCGATGGTTTTGTTGAAAATGAAAGAAATTGCCGAGGCTTATT 143746 Query 195690 TGGGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAAC 195749 |||| ||| |||||| |||| || || || || || ||||| |||| ||| |||||| Sbjct 143745 TGGGCAAAGAAGTGAAAAATGCCGTCGTCACGGTTCCAGCTTATTTCAACGATGCACAAC 143686 Query 195750 GACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATG 195809 | || || || || || || | | ||||| ||||| || | || |||| ||||| | Sbjct 143685 GTCAAGCTACCAAAGATGCAGGCACCATTGCTGGTCTTAATGTTGTTCGAATCATCAACG 143626 Query 195810 AACC 195813 |||| Sbjct 143625 AACC 143622 Score = 102 bits (112), Expect = 1e-16 Identities = 326/502 (65%), Gaps = 8/502 (2%) Strand=Plus/Minus Query 196373 ATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGT 196432 ||||| || || ||||| || || || ||||| || || ||||||| || | || ||| Sbjct 142879 ATCAATCCAGACGAAGCTGTCGCCTACGGTGCTGCGGTCCAGGCTGGCGTTATTTCCGGT 142820 Query 196433 GTTGACAATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGT 196492 | || ||| | || |||||| |||| | || || || | | |||| Sbjct 142819 GAAGAAGATACTG--GT----GATCTTGTGCTGTTGGACGTCAATCCGTTGACTTTGGGA 142766 Query 196493 CTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACT 196552 ||||||| | || || || ||||| || | ||| ||||| || | ||||| Sbjct 142765 ATTGAAACTGTCGGCGGAGTGATGACGAAGCTGATTCCCAGGAATACGGTAGTGCCGACC 142706 Query 196553 AAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGTA 196612 ||||| || | || || | |||| ||||| || ||| ||||||||| Sbjct 142705 AAGAAATCCCAGATATTCAGCACCGCTGCCGACAATCAGCCCACAGTTACTATTCAAGTT 142646 Query 196613 TATGAAGGAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACTTTCGATTTGAC 196671 | ||||| ||||| || || | || || || ||||| ||||| | || ||| |||| Sbjct 142645 TTCGAAGGCGAACGA-CCAATGACCAAAGACAATCATCTTCTTGGGAAATTTGATCTGAC 142587 Query 196672 GGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGC 196731 || || || | || || | || || ||||| ||| | ||| |||||||| |||| Sbjct 142586 CGGCATACCTCCGGCTCCGCGTGGGGTACCACAAATTGAAGTTACATTCGATATCGACGT 142527 Query 196732 AAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATTGT 196791 || || ||| | ||||||| || || ||||| | | | ||||| | ||||| Sbjct 142526 GAACGGCATTTTGCACGTCACCGCCGAAGACAAAGGTACCGGCAACAAGAACAAGATCAC 142467 Query 196792 GATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAGATGC 196851 ||||||||||| | || || || ||| || ||||| || ||| | | ||||| Sbjct 142466 CATTACCAATGATCACAATCGTCTGTCGCCGGAAGATATTGACCGCATGATCAACGATGC 142407 Query 196852 GGAAAAGTACAGGGAAGAAGAC 196873 ||||| || |||||| ||| Sbjct 142406 CGAAAAATATGCGGAAGAGGAC 142385 Score = 93.3 bits (102), Expect = 6e-14 Identities = 117/160 (73%), Gaps = 3/160 (2%) Strand=Plus/Minus Query 195814 AACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATT 195873 ||| || ||||||||||| || ||||||||||| || ||| ||| |||||| | || Sbjct 143569 AACTGCTGCTGCAATTGCATACGGTCTGGACAAAAAGGAGGGTGAA---AAAAATATTTT 143513 Query 195874 GATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTAT 195933 | | ||||| || ||||| |||||||| || | | || | |||||| |||| | Sbjct 143512 AGTTTACGATCTTGGAGGTGGAACGTTTGACGTTACTTTGCTTACTATTGACAATGGTGT 143453 Query 195934 ATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGT 195973 |||||||| | ||||| ||||||||||||| | ||| Sbjct 143452 TTTCGAAGTGCTGTCTACTAATGGTGATACTCATTTGGGT 143413 >seq5215 Length=241 Score = 109 bits (120), Expect = 7e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| || || ||||| || ||||| |||||| | || || ||| | || Sbjct 235 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAGCCATCT 176 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | |||| || || |||||||| || || ||||| || ||||| Sbjct 175 GATACAATAGAAAATGTGAAAGGAAAAATACAAGATAAAGAGGGAATTCCTCCGGATCAA 116 Query 171982 CAACGACTTATTTTTGCTGGTAA 172004 ||||| | |||||||||||||| Sbjct 115 CAACGTTTGATTTTTGCTGGTAA 93 >seq6 Length=459386 Score = 100 bits (110), Expect = 4e-16 Identities = 77/90 (86%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 171963 AGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACG 172022 ||| |||||||| |||||||| ||||| ||||||||||| |||||||||||||||||||| Sbjct 122501 AGGGATTCCACCTGATCAGCAGCGACTGATTTTTGCTGGAAAACAGCTTGAAGATGGACG 122560 Query 172023 TACCCTCGCTGATTACAACGTTCA-AAAGG 172051 ||| | | |||||||| |||| ||||| Sbjct 122561 TACTTTGTCCGATTACAATATTCAGAAAGG 122590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657813463260720