Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24] 5,951 sequences; 50,853,738 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq117 116 7e-21 seq5215 109 1e-18 seq332 104 4e-17 seq1863 102 1e-16 seq2524 93.3 8e-14 seq326 93.3 8e-14 >seq117 Length=123509 Score = 116 bits (128), Expect = 7e-21 Identities = 121/159 (76%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 193218 TTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTG 193277 || || ||||| |||||||| || ||||||||||| || ||||| ||||| || ||||| Sbjct 10269 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 10328 Query 193278 GTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTT 193337 |||| | |||| || || || || | ||||||||||| ||||||||||| || || Sbjct 10329 CTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 10388 Query 193338 AGCGTTTTTACAAATATTTGCATTTTATTAGTAAAATAA 193376 || || || || ||||| ||||| | | | |||| ||| Sbjct 10389 AGTGTCTTCACGAATATCTGCATAATTTGAATAAATTAA 10427 >seq5215 Length=241 Score = 109 bits (120), Expect = 1e-18 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 |||| || || |||||||| || | |||||||| ||||| ||||| |||||||||||| Sbjct 87 AATTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGT 146 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 ||||| ||| | |||| || ||||| || | ||| ||||| | || || ||||| Sbjct 147 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGCTCTACTTCCAAGGTGATCGTTTTG 206 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || || || ||||| ||||||||| Sbjct 207 CCGGTAAGAGTCTTAACAAAAATTTGCATT 236 >seq332 Length=28044 Score = 104 bits (114), Expect = 4e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 || || || || |||||||| || | |||||||| ||||| ||||| |||||||||||| Sbjct 27769 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGT 27828 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 ||||| ||| | |||| || ||||| || | || ||||| | || || ||||| Sbjct 27829 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAACGTGATGGTTTTC 27888 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || || || ||||| ||||||||| Sbjct 27889 CCAGTAAGAGTCTTAACAAAAATTTGCATT 27918 Score = 96.9 bits (106), Expect = 6e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 || |||||||| | | || ||||| || || ||||||||||||||||| |||||| | Sbjct 197 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 256 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 |||| ||| || ||||| || | || ||||||| || || ||||| || || || Sbjct 257 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 316 Query 193341 GTTTTTACAAATATTTGCATT 193361 || || ||||| ||||||||| Sbjct 317 GTCTTAACAAAAATTTGCATT 337 Score = 93.3 bits (102), Expect = 8e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 || |||||||| | | || ||||| || || ||||||||||||||||| |||||| | Sbjct 480 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 539 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 |||| ||| || ||||| || | || ||||| | || || ||||| || || || Sbjct 540 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 599 Query 193341 GTTTTTACAAATATTTGCATT 193361 || || ||||| ||||||||| Sbjct 600 GTCTTAACAAAAATTTGCATT 620 >seq1863 Length=625 Score = 102 bits (112), Expect = 1e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 || |||||||| | | || ||||| || || ||||||||||||||||| |||||| | Sbjct 146 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 87 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 |||| |||| || ||||| || | ||| ||||| | || || ||||| || || || Sbjct 86 TTTACATTTTCTATTGTATCAGATGGCTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 27 Query 193341 GTTTTTACAAATATTTGCATT 193361 || || ||||| ||||||||| Sbjct 26 GTCTTAACAAAAATTTGCATT 6 Score = 96.9 bits (106), Expect = 6e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 || |||||||| | | || ||||| || || ||||||||||||||||| |||||| | Sbjct 429 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 370 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 |||| ||| || ||||| || | || ||||||| || || ||||| || || || Sbjct 369 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 310 Query 193341 GTTTTTACAAATATTTGCATT 193361 || || ||||| ||||||||| Sbjct 309 GTCTTAACAAAAATTTGCATT 289 >seq2524 Length=468 Score = 93.3 bits (102), Expect = 8e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 || |||||||| | | || ||||| || || ||||||||||||||||| |||||| | Sbjct 233 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 292 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 |||| ||| || ||||| || | || ||||| | || || ||||| || || || Sbjct 293 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 352 Query 193341 GTTTTTACAAATATTTGCATT 193361 || || ||||| ||||||||| Sbjct 353 GTCTTAACAAAAATTTGCATT 373 >seq326 Length=30629 Score = 93.3 bits (102), Expect = 8e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 || |||||||| | | || ||||| || || ||||||||||||||||| |||||| | Sbjct 18523 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 18582 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 |||| ||| || ||||| || | || ||||| | || || ||||| || || || Sbjct 18583 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAATGTGATGGTTTTGCCGGTGAGA 18642 Query 193341 GTTTTTACAAATATTTGCATT 193361 || || ||||| ||||||||| Sbjct 18643 GTCTTAACAAAAATTTGCATT 18663 Score = 87.8 bits (96), Expect = 3e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 || |||||||| | | || ||||| || || ||||||||||||||||| |||||| | Sbjct 17678 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 17737 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 |||| ||| || ||||| || | || ||||| | || || ||||| || || || Sbjct 17738 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 17797 Query 193341 GTTTTTACAAATATTTGCATT 193361 || || || || ||||||||| Sbjct 17798 GTCTTAACGAAAATTTGCATT 17818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899587476958320