Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24]
5,951 sequences; 50,853,738 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq117 120 4e-22
seq332 118 2e-21
seq326 109 8e-19
seq5215 104 3e-17
seq1863 91.5 2e-13
seq2524 87.8 3e-12
>seq117
Length=123509
Score = 120 bits (132), Expect = 4e-22
Identities = 113/144 (78%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
|||||| || ||| | |||||||| ||||||||||| || ||||| ||||| || ||
Sbjct 9157 AATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATC 9098
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
||||| ||| ||| || |||| |||||| |||||||| |||||||| || || || ||
Sbjct 9097 TGATACGATTGAAAATGTAAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCA 9038
Query 155942 ACAAAGATTGATTTATGCCGGTAA 155965
||| ||||||| | ||| |||||
Sbjct 9037 GCAACGATTGATATTTGCTGGTAA 9014
Score = 118 bits (130), Expect = 2e-21
Identities = 112/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
|||||| || ||| | |||||||| ||||||||||| || ||||| ||||| || ||
Sbjct 8870 AATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATC 8811
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
||||| ||| ||| || |||| |||||| |||||||| |||||||| || || || ||
Sbjct 8810 TGATACGATTGAAAATGTAAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCA 8751
Query 155942 ACAAAGATTGATTTATGCCGGTA 155964
||| ||||||| | ||| ||||
Sbjct 8750 GCAACGATTGATATTTGCTGGTA 8728
Score = 118 bits (130), Expect = 2e-21
Identities = 112/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| | |||||||| ||||||||||| || ||||| ||||| || ||
Sbjct 9443 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCA 9384
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| ||| ||||||| |||||| |||||||| |||||||| || || || ||
Sbjct 9383 GATACGATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCAG 9324
Query 155943 CAAAGATTGATTTATGCCGGTAA 155965
||| ||||||| | ||| |||||
Sbjct 9323 CAACGATTGATATTTGCTGGTAA 9301
Score = 116 bits (128), Expect = 5e-21
Identities = 111/142 (78%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| | |||||||| ||||||||||| || ||||| ||||| || ||
Sbjct 9729 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCA 9670
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| ||| ||||||| |||||| |||||||| |||||||| || || || ||
Sbjct 9669 GATACGATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCAG 9610
Query 155943 CAAAGATTGATTTATGCCGGTA 155964
||| ||||||| | ||| ||||
Sbjct 9609 CAACGATTGATATTTGCTGGTA 9588
Score = 105 bits (116), Expect = 1e-17
Identities = 119/158 (75%), Gaps = 1/158 (1%)
Strand=Plus/Minus
Query 155808 AATTTATGTAATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTA 155867
||||||| || | ||||| ||||| | || ||| | |||||||||||||| ||| ||
Sbjct 10425 AATTTATTCAA-ATTATGCAGATATTCGTGAAGACACTTACTGGAAAAACTATAACACTA 10367
Query 155868 GAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGC 155927
||||| ||| || || | || ||| || |||| |||||| || ||||| ||||||
Sbjct 10366 GAAGTTGAACCATCAGACACCATCGAAAATGTTAAAAGTAAAATTCAGGATAAGGAAGGC 10307
Query 155928 ATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAA 155965
|| ||||| || || |||||||| || | ||| |||||
Sbjct 10306 ATTCCTCCTGATCAGCAAAGATTAATCTTTGCAGGTAA 10269
>seq332
Length=28044
Score = 118 bits (130), Expect = 2e-21
Identities = 115/148 (78%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
||||||||| ||| |||| || | ||||| ||||| || || || ||||| ||| ||
Sbjct 27918 AATGCAAATTTTTGTTAAGACTCTTACTGGGAAAACCATCACGTTGGAAGTAGAACCATC 27859
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
||||| || ||| |||||| ||||||||||||||||| || || ||||| || ||
Sbjct 27858 TGATACAATAGAAAATGTGAAAGGAAAAATACAAGATAAAGAGGGAATTCCTCCGGATCA 27799
Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAG 155969
|||| | ||||||| ||| |||||||||
Sbjct 27798 ACAACGTTTGATTTTTGCTGGTAAGCAG 27771
Score = 100 bits (110), Expect = 4e-16
Identities = 109/145 (75%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| |||||| | ||||| ||||| |||||||| |||||| | ||||| || ||
Sbjct 1253 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 1194
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| ||| || |||| || || ||||| ||||||||||| || ||||| |||
Sbjct 1193 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCAGATCAA 1134
Query 155943 CAAAGATTGATTTATGCCGGTAAGC 155967
|| | | |||| ||| |||| ||
Sbjct 1133 CAGCGGCTTATTTTTGCTGGTATGC 1109
Score = 91.5 bits (100), Expect = 2e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
||||||||| ||| |||| || | || || ||||| || || |||||||| ||| ||
Sbjct 337 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATC 278
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
||||| || || || ||| ||||| |||||||||||||| || || ||||| ||
Sbjct 277 TGATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCA 218
Query 155942 ACAAAGATTGATTTATGCCGGTA 155964
||| | |||||| ||| ||||
Sbjct 217 GCAACGTCTGATTTTTGCTGGTA 195
Score = 87.8 bits (96), Expect = 3e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
||||||||| ||| |||| || | || || ||||| || || || ||||| ||| ||
Sbjct 620 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATC 561
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
||||| || || || ||| ||||| |||||||||||||| || || ||||| ||
Sbjct 560 TGATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCA 501
Query 155942 ACAAAGATTGATTTATGCCGGTA 155964
||| | |||||| ||| ||||
Sbjct 500 GCAACGTCTGATTTTTGCTGGTA 478
>seq326
Length=30629
Score = 109 bits (120), Expect = 8e-19
Identities = 113/148 (76%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
||||||||| || |||| || | ||||||||||| || || || ||||| ||| ||
Sbjct 18098 AATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 18039
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
||||| ||| ||| |||||| |||||||| ||||| ||||| || || || || ||
Sbjct 18038 TGATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCA 17979
Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAG 155969
|||| | ||||||| ||| ||| |||||
Sbjct 17978 ACAACGTTTGATTTTTGCTGGTGAGCAG 17951
Score = 109 bits (120), Expect = 8e-19
Identities = 113/148 (76%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
||||||||| || |||| || | ||||||||||| || || || ||||| ||| ||
Sbjct 18943 AATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 18884
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
||||| ||| ||| |||||| |||||||| ||||| ||||| || || || || ||
Sbjct 18883 TGATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCA 18824
Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAG 155969
|||| | ||||||| ||| ||| |||||
Sbjct 18823 ACAACGTTTGATTTTTGCTGGTGAGCAG 18796
Score = 100 bits (110), Expect = 4e-16
Identities = 109/145 (75%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| |||||| | ||||| ||||| |||||||| |||||| | ||||| || ||
Sbjct 19576 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 19517
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| ||| || |||| || || ||||| ||||||||||| || ||||| |||
Sbjct 19516 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCAGATCAA 19457
Query 155943 CAAAGATTGATTTATGCCGGTAAGC 155967
|| | | |||| ||| |||| ||
Sbjct 19456 CAGCGGCTTATTTTTGCTGGTATGC 19432
Score = 91.5 bits (100), Expect = 2e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
||||||||| ||| |||| || | || || ||||| || ||||| ||||| ||| ||
Sbjct 18663 AATGCAAATTTTTGTTAAGACTCTCACCGGCAAAACCATCACATTGGAAGTAGAACCATC 18604
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
||||| || || || ||| ||||| |||||||||||||| || || ||||| ||
Sbjct 18603 TGATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCA 18544
Query 155942 ACAAAGATTGATTTATGCCGGTA 155964
||| | |||||| ||| ||||
Sbjct 18543 GCAACGTCTGATTTTTGCTGGTA 18521
>seq5215
Length=241
Score = 104 bits (114), Expect = 3e-17
Identities = 110/145 (76%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
||||||||| ||| |||| || | || || ||||| || || || ||||| || ||
Sbjct 236 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAGCCATC 177
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
||||| || ||| |||||| ||||||||||||||||| || || ||||| || ||
Sbjct 176 TGATACAATAGAAAATGTGAAAGGAAAAATACAAGATAAAGAGGGAATTCCTCCGGATCA 117
Query 155942 ACAAAGATTGATTTATGCCGGTAAG 155966
|||| | ||||||| ||| ||||||
Sbjct 116 ACAACGTTTGATTTTTGCTGGTAAG 92
>seq1863
Length=625
Score = 91.5 bits (100), Expect = 2e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
||||||||| ||| |||| || | || || ||||| || || |||||||| ||| ||
Sbjct 289 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATC 348
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
||||| || || || ||| ||||| |||||||||||||| || || ||||| ||
Sbjct 349 TGATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCA 408
Query 155942 ACAAAGATTGATTTATGCCGGTA 155964
||| | |||||| ||| ||||
Sbjct 409 GCAACGTCTGATTTTTGCTGGTA 431
Score = 87.8 bits (96), Expect = 3e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
||||||||| ||| |||| || | || || ||||| || || || ||||| || ||
Sbjct 6 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAGCCATC 65
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
||||| || ||| || ||| ||||| |||||||||||||| || || ||||| ||
Sbjct 66 TGATACAATAGAAAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCA 125
Query 155942 ACAAAGATTGATTTATGCCGGTA 155964
||| | |||||| ||| ||||
Sbjct 126 GCAACGTCTGATTTTTGCTGGTA 148
>seq2524
Length=468
Score = 87.8 bits (96), Expect = 3e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
||||||||| ||| |||| || | || || ||||| || || || ||||| ||| ||
Sbjct 373 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATC 314
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
||||| || || || ||| ||||| |||||||||||||| || || ||||| ||
Sbjct 313 TGATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCA 254
Query 155942 ACAAAGATTGATTTATGCCGGTA 155964
||| | |||||| ||| ||||
Sbjct 253 GCAACGTCTGATTTTTGCTGGTA 231
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731817557871600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |