Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24] 5,951 sequences; 50,853,738 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq117 120 4e-22 seq332 118 2e-21 seq326 109 8e-19 seq5215 104 3e-17 seq1863 91.5 2e-13 seq2524 87.8 3e-12 >seq117 Length=123509 Score = 120 bits (132), Expect = 4e-22 Identities = 113/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| | |||||||| ||||||||||| || ||||| ||||| || || Sbjct 9157 AATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATC 9098 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| ||| ||| || |||| |||||| |||||||| |||||||| || || || || Sbjct 9097 TGATACGATTGAAAATGTAAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCA 9038 Query 155942 ACAAAGATTGATTTATGCCGGTAA 155965 ||| ||||||| | ||| ||||| Sbjct 9037 GCAACGATTGATATTTGCTGGTAA 9014 Score = 118 bits (130), Expect = 2e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| | |||||||| ||||||||||| || ||||| ||||| || || Sbjct 8870 AATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATC 8811 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| ||| ||| || |||| |||||| |||||||| |||||||| || || || || Sbjct 8810 TGATACGATTGAAAATGTAAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCA 8751 Query 155942 ACAAAGATTGATTTATGCCGGTA 155964 ||| ||||||| | ||| |||| Sbjct 8750 GCAACGATTGATATTTGCTGGTA 8728 Score = 118 bits (130), Expect = 2e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | |||||||| ||||||||||| || ||||| ||||| || || Sbjct 9443 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCA 9384 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| ||||||| |||||| |||||||| |||||||| || || || || Sbjct 9383 GATACGATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCAG 9324 Query 155943 CAAAGATTGATTTATGCCGGTAA 155965 ||| ||||||| | ||| ||||| Sbjct 9323 CAACGATTGATATTTGCTGGTAA 9301 Score = 116 bits (128), Expect = 5e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | |||||||| ||||||||||| || ||||| ||||| || || Sbjct 9729 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCA 9670 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| ||||||| |||||| |||||||| |||||||| || || || || Sbjct 9669 GATACGATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCAG 9610 Query 155943 CAAAGATTGATTTATGCCGGTA 155964 ||| ||||||| | ||| |||| Sbjct 9609 CAACGATTGATATTTGCTGGTA 9588 Score = 105 bits (116), Expect = 1e-17 Identities = 119/158 (75%), Gaps = 1/158 (1%) Strand=Plus/Minus Query 155808 AATTTATGTAATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTA 155867 ||||||| || | ||||| ||||| | || ||| | |||||||||||||| ||| || Sbjct 10425 AATTTATTCAA-ATTATGCAGATATTCGTGAAGACACTTACTGGAAAAACTATAACACTA 10367 Query 155868 GAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGC 155927 ||||| ||| || || | || ||| || |||| |||||| || ||||| |||||| Sbjct 10366 GAAGTTGAACCATCAGACACCATCGAAAATGTTAAAAGTAAAATTCAGGATAAGGAAGGC 10307 Query 155928 ATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAA 155965 || ||||| || || |||||||| || | ||| ||||| Sbjct 10306 ATTCCTCCTGATCAGCAAAGATTAATCTTTGCAGGTAA 10269 >seq332 Length=28044 Score = 118 bits (130), Expect = 2e-21 Identities = 115/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| |||| || | ||||| ||||| || || || ||||| ||| || Sbjct 27918 AATGCAAATTTTTGTTAAGACTCTTACTGGGAAAACCATCACGTTGGAAGTAGAACCATC 27859 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| || ||| |||||| ||||||||||||||||| || || ||||| || || Sbjct 27858 TGATACAATAGAAAATGTGAAAGGAAAAATACAAGATAAAGAGGGAATTCCTCCGGATCA 27799 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAG 155969 |||| | ||||||| ||| ||||||||| Sbjct 27798 ACAACGTTTGATTTTTGCTGGTAAGCAG 27771 Score = 100 bits (110), Expect = 4e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | ||||| ||||| |||||||| |||||| | ||||| || || Sbjct 1253 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 1194 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| || |||| || || ||||| ||||||||||| || ||||| ||| Sbjct 1193 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCAGATCAA 1134 Query 155943 CAAAGATTGATTTATGCCGGTAAGC 155967 || | | |||| ||| |||| || Sbjct 1133 CAGCGGCTTATTTTTGCTGGTATGC 1109 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| |||| || | || || ||||| || || |||||||| ||| || Sbjct 337 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATC 278 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| || || || ||| ||||| |||||||||||||| || || ||||| || Sbjct 277 TGATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCA 218 Query 155942 ACAAAGATTGATTTATGCCGGTA 155964 ||| | |||||| ||| |||| Sbjct 217 GCAACGTCTGATTTTTGCTGGTA 195 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| |||| || | || || ||||| || || || ||||| ||| || Sbjct 620 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATC 561 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| || || || ||| ||||| |||||||||||||| || || ||||| || Sbjct 560 TGATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCA 501 Query 155942 ACAAAGATTGATTTATGCCGGTA 155964 ||| | |||||| ||| |||| Sbjct 500 GCAACGTCTGATTTTTGCTGGTA 478 >seq326 Length=30629 Score = 109 bits (120), Expect = 8e-19 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || |||| || | ||||||||||| || || || ||||| ||| || Sbjct 18098 AATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 18039 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| ||| ||| |||||| |||||||| ||||| ||||| || || || || || Sbjct 18038 TGATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCA 17979 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAG 155969 |||| | ||||||| ||| ||| ||||| Sbjct 17978 ACAACGTTTGATTTTTGCTGGTGAGCAG 17951 Score = 109 bits (120), Expect = 8e-19 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || |||| || | ||||||||||| || || || ||||| ||| || Sbjct 18943 AATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 18884 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| ||| ||| |||||| |||||||| ||||| ||||| || || || || || Sbjct 18883 TGATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCA 18824 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAG 155969 |||| | ||||||| ||| ||| ||||| Sbjct 18823 ACAACGTTTGATTTTTGCTGGTGAGCAG 18796 Score = 100 bits (110), Expect = 4e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | ||||| ||||| |||||||| |||||| | ||||| || || Sbjct 19576 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 19517 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| || |||| || || ||||| ||||||||||| || ||||| ||| Sbjct 19516 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCAGATCAA 19457 Query 155943 CAAAGATTGATTTATGCCGGTAAGC 155967 || | | |||| ||| |||| || Sbjct 19456 CAGCGGCTTATTTTTGCTGGTATGC 19432 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| |||| || | || || ||||| || ||||| ||||| ||| || Sbjct 18663 AATGCAAATTTTTGTTAAGACTCTCACCGGCAAAACCATCACATTGGAAGTAGAACCATC 18604 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| || || || ||| ||||| |||||||||||||| || || ||||| || Sbjct 18603 TGATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCA 18544 Query 155942 ACAAAGATTGATTTATGCCGGTA 155964 ||| | |||||| ||| |||| Sbjct 18543 GCAACGTCTGATTTTTGCTGGTA 18521 >seq5215 Length=241 Score = 104 bits (114), Expect = 3e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| |||| || | || || ||||| || || || ||||| || || Sbjct 236 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAGCCATC 177 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| || ||| |||||| ||||||||||||||||| || || ||||| || || Sbjct 176 TGATACAATAGAAAATGTGAAAGGAAAAATACAAGATAAAGAGGGAATTCCTCCGGATCA 117 Query 155942 ACAAAGATTGATTTATGCCGGTAAG 155966 |||| | ||||||| ||| |||||| Sbjct 116 ACAACGTTTGATTTTTGCTGGTAAG 92 >seq1863 Length=625 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| |||| || | || || ||||| || || |||||||| ||| || Sbjct 289 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATC 348 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| || || || ||| ||||| |||||||||||||| || || ||||| || Sbjct 349 TGATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCA 408 Query 155942 ACAAAGATTGATTTATGCCGGTA 155964 ||| | |||||| ||| |||| Sbjct 409 GCAACGTCTGATTTTTGCTGGTA 431 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| |||| || | || || ||||| || || || ||||| || || Sbjct 6 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAGCCATC 65 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| || ||| || ||| ||||| |||||||||||||| || || ||||| || Sbjct 66 TGATACAATAGAAAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCA 125 Query 155942 ACAAAGATTGATTTATGCCGGTA 155964 ||| | |||||| ||| |||| Sbjct 126 GCAACGTCTGATTTTTGCTGGTA 148 >seq2524 Length=468 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| |||| || | || || ||||| || || || ||||| ||| || Sbjct 373 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATC 314 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| || || || ||| ||||| |||||||||||||| || || ||||| || Sbjct 313 TGATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCA 254 Query 155942 ACAAAGATTGATTTATGCCGGTA 155964 ||| | |||||| ||| |||| Sbjct 253 GCAACGTCTGATTTTTGCTGGTA 231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731817557871600