Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24]
5,951 sequences; 50,853,738 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq117 125 1e-23
seq332 116 7e-21
seq326 116 7e-21
seq1863 105 1e-17
seq5215 102 1e-16
seq2524 100 5e-16
>seq117
Length=123509
Score = 125 bits (138), Expect = 1e-23
Identities = 114/144 (79%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986
||||||||||| || |||| || || |||||||| || ||||| |||||||| ||||||
Sbjct 9014 TTACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTA 9073
Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046
|||||||||| || ||||| || | |||||||| | || || ||||| ||||||
Sbjct 9074 CTTTTTACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 9133
Query 172047 AATGTTTTAATGAATATCTGCATT 172070
|||||||| | || |||||||||
Sbjct 9134 AATGTTTTCACAAAAATCTGCATT 9157
Score = 123 bits (136), Expect = 5e-23
Identities = 113/143 (79%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
|||||||||| || |||| || || |||||||| || ||||| |||||||| ||||||
Sbjct 8728 TACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTAC 8787
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
|||||||||| || ||||| || | |||||||| | || || ||||| |||||||
Sbjct 8788 TTTTTACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTA 8847
Query 172048 ATGTTTTAATGAATATCTGCATT 172070
||||||| | || |||||||||
Sbjct 8848 ATGTTTTCACAAAAATCTGCATT 8870
Score = 123 bits (136), Expect = 5e-23
Identities = 113/143 (79%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986
||||||||||| || |||| || || |||||||| || ||||| |||||||| ||||||
Sbjct 9301 TTACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTA 9360
Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046
|||| ||||| || |||||||| | |||||||| | || || ||||| ||||||
Sbjct 9361 CTTTTCACATTTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 9420
Query 172047 AATGTTTTAATGAATATCTGCAT 172069
|||||||| | || ||||||||
Sbjct 9421 AATGTTTTCACAAAAATCTGCAT 9443
Score = 122 bits (134), Expect = 2e-22
Identities = 112/142 (79%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
|||||||||| || |||| || || |||||||| || ||||| |||||||| ||||||
Sbjct 9588 TACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTAC 9647
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
|||| ||||| || |||||||| | |||||||| | || || ||||| |||||||
Sbjct 9648 TTTTCACATTTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTA 9707
Query 172048 ATGTTTTAATGAATATCTGCAT 172069
||||||| | || ||||||||
Sbjct 9708 ATGTTTTCACAAAAATCTGCAT 9729
Score = 118 bits (130), Expect = 2e-21
Identities = 112/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986
||||| ||||| |||||||| || || ||||| || || ||||| ||||| || ||||||
Sbjct 10269 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 10328
Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046
|||| ||||| || || ||||| | ||| |||||||| || || ||||| |||||
Sbjct 10329 CTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 10388
Query 172047 AATGTTTTAATGAATATCTGCAT 172069
| ||| || | ||||||||||||
Sbjct 10389 AGTGTCTTCACGAATATCTGCAT 10411
>seq332
Length=28044
Score = 116 bits (128), Expect = 7e-21
Identities = 111/142 (78%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
||||||||||||| | | |||||| || ||||| || |||||||| ||||| || ||
Sbjct 1112 TACCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCTTGC 1171
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
|||||||||| || |||||||||| || ||||| || ||||| ||||| || || |
Sbjct 1172 TTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCA 1231
Query 172048 ATGTTTTAATGAATATCTGCAT 172069
| ||||| | |||||||||||
Sbjct 1232 ACGTTTTCACAAATATCTGCAT 1253
Score = 114 bits (126), Expect = 2e-20
Identities = 116/151 (77%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 171920 CAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTG 171979
||||| |||||||||||||| || | |||||| || ||||| |||||||| ||||| ||
Sbjct 27210 CAATTACTTACCAGCAAAAATCAAACGCTGTTGATCCGGTGGAATTCCTTCCTTATCCTG 27269
Query 171980 TATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTT 172039
|||||| ||||||||| ||| ||||| || | ||||||||| | || || |||||
Sbjct 27270 TATTTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTT 27329
Query 172040 ACCAGTTAATGTTTTAATGAATATCTGCATT 172070
|| || | || |||| || || ||||||
Sbjct 27330 GCCGGTAAGAGTCTTAACAAAAATTTGCATT 27360
Score = 113 bits (124), Expect = 8e-20
Identities = 115/150 (77%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 171921 AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980
|| || |||||||||||||| || | ||||| || || || ||||| ||||||||||||
Sbjct 27769 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGT 27828
Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 172040
||||| ||| ||||| ||| ||||| || | ||||||||| | || ||||||||
Sbjct 27829 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAACGTGATGGTTTTC 27888
Query 172041 CCAGTTAATGTTTTAATGAATATCTGCATT 172070
||||| | || |||| || || ||||||
Sbjct 27889 CCAGTAAGAGTCTTAACAAAAATTTGCATT 27918
Score = 109 bits (120), Expect = 1e-18
Identities = 111/145 (77%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986
|||||||||||||| | | ||||| || ||||| ||||| |||||||| || ||||||
Sbjct 1443 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 1502
Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046
|| ||||| | || ||||| | ||| ||||| |||||||||||||| || ||
Sbjct 1503 CCCTTCACATTTTCAACTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCGGTC 1562
Query 172047 AATGTTTTAATGAATATCTGCATTT 172071
| ||||| | |||||||||||||
Sbjct 1563 AGAGTTTTGACAAATATCTGCATTT 1587
Score = 109 bits (120), Expect = 1e-18
Identities = 111/145 (77%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986
|||||||||||||| | | ||||| || ||||| ||||| |||||||| || ||||||
Sbjct 17800 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 17859
Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046
|| ||||| | || ||||| | ||| ||||| |||||||||||||| || ||
Sbjct 17860 CCCTTCACATTTTCAACTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCGGTC 17919
Query 172047 AATGTTTTAATGAATATCTGCATTT 172071
| ||||| | |||||||||||||
Sbjct 17920 AGAGTTTTGACAAATATCTGCATTT 17944
Score = 109 bits (120), Expect = 1e-18
Identities = 110/143 (77%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
||||||||||||| || | || || || ||||| ||||| |||||||| ||||||||
Sbjct 26373 TACCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGC 26432
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
||||||||| ||| ||||| || | ||||||||||| || || ||||| || || |
Sbjct 26433 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAA 26492
Query 172048 ATGTTTTAATGAATATCTGCATT 172070
|| |||| ||| || ||||||
Sbjct 26493 GAGTCTTAACGAAAATTTGCATT 26515
Score = 109 bits (120), Expect = 1e-18
Identities = 114/150 (76%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 171921 AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980
|| || |||||||||||||| || | ||||| || ||||| |||||||| ||||| |||
Sbjct 27490 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGT 27549
Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 172040
||||| ||||||||| ||| ||||| || | ||||||||| | || || |||||
Sbjct 27550 ATTTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTG 27609
Query 172041 CCAGTTAATGTTTTAATGAATATCTGCATT 172070
|| || | || |||| || || ||||||
Sbjct 27610 CCGGTAAGAGTCTTAACAAAAATTTGCATT 27639
Score = 105 bits (116), Expect = 1e-17
Identities = 109/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
||||||||||||| | | || || || ||||| ||||||||||||||||| |||||
Sbjct 195 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGC 254
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
||||||||| ||| ||||| || | ||||||||||| || || ||||| || || |
Sbjct 255 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAA 314
Query 172048 ATGTTTTAATGAATATCTGCATT 172070
|| |||| || || ||||||
Sbjct 315 GAGTCTTAACAAAAATTTGCATT 337
Score = 105 bits (116), Expect = 1e-17
Identities = 114/151 (75%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 171920 CAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTG 171979
||||| |||||||||||||| || | || || || ||||| |||||||| ||||| ||
Sbjct 26647 CAATTACTTACCAGCAAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCCTTATCCTG 26706
Query 171980 TATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTT 172039
|||||| ||||||||| ||| ||||| || | ||||||||| | || || |||||
Sbjct 26707 TATTTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTT 26766
Query 172040 ACCAGTTAATGTTTTAATGAATATCTGCATT 172070
|| || | || |||| || || ||||||
Sbjct 26767 GCCGGTAAGAGTCTTAACAAAAATTTGCATT 26797
Score = 105 bits (116), Expect = 1e-17
Identities = 109/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
||||||||||||| | | || || || ||||| |||||||| ||||| ||||||||
Sbjct 26938 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGC 26997
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
||||||||| ||| ||||| || | ||||||||||| || || ||||| || || |
Sbjct 26998 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAA 27057
Query 172048 ATGTTTTAATGAATATCTGCATT 172070
|| |||| ||| || ||||||
Sbjct 27058 GAGTCTTAACGAAAATTTGCATT 27080
Score = 100 bits (110), Expect = 5e-16
Identities = 108/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
||||||||||||| | | || || || ||||| ||||||||||||||||| |||||
Sbjct 478 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGC 537
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
||||||||| ||| ||||| || | ||||||||| | || || ||||| || || |
Sbjct 538 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAA 597
Query 172048 ATGTTTTAATGAATATCTGCATT 172070
|| |||| || || ||||||
Sbjct 598 GAGTCTTAACAAAAATTTGCATT 620
>seq326
Length=30629
Score = 116 bits (128), Expect = 7e-21
Identities = 111/142 (78%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
||||||||||||| | | |||||| || ||||| || |||||||| ||||| || ||
Sbjct 19435 TACCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCTTGC 19494
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
|||||||||| || |||||||||| || ||||| || ||||| ||||| || || |
Sbjct 19495 TTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCA 19554
Query 172048 ATGTTTTAATGAATATCTGCAT 172069
| ||||| | |||||||||||
Sbjct 19555 ACGTTTTCACAAATATCTGCAT 19576
Score = 114 bits (126), Expect = 2e-20
Identities = 116/151 (77%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 171920 CAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTG 171979
||||| |||||||||||||| || | ||||| || ||||| |||||||| ||||| ||
Sbjct 18230 CAATTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTG 18289
Query 171980 TATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTT 172039
|||||| ||||||||| ||| ||||| || | ||||||||| | || || |||||
Sbjct 18290 TATTTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTT 18349
Query 172040 ACCAGTTAATGTTTTAATGAATATCTGCATT 172070
|| || | || |||| || |||||||||
Sbjct 18350 GCCGGTAAGAGTCTTAACAAAAATCTGCATT 18380
Score = 114 bits (126), Expect = 2e-20
Identities = 113/146 (77%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986
|||||||||||||| | | ||||| || ||||| ||||| |||||||| || ||||||
Sbjct 19766 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 19825
Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046
|| ||||| || || || || | ||| ||||| |||||||||||||| |||||
Sbjct 19826 CCCTTCACATTTTCAATTGTGTCAGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 19885
Query 172047 AATGTTTTAATGAATATCTGCATTTT 172072
| ||||| | ||||||||||||||
Sbjct 19886 AGAGTTTTCACAAATATCTGCATTTT 19911
Score = 109 bits (120), Expect = 1e-18
Identities = 114/150 (76%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 171921 AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980
|| || | |||||||||||| || | ||||| || ||||| |||||||| ||||| |||
Sbjct 17949 AACTGCTCACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGT 18008
Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 172040
||||| ||| ||||| || ||||| || | ||||||||| | ||| || |||||
Sbjct 18009 ATTTTCCCTTTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 18068
Query 172041 CCAGTTAATGTTTTAATGAATATCTGCATT 172070
||||| | || |||| ||| || ||||||
Sbjct 18069 CCAGTAAGGGTCTTAACGAAAATTTGCATT 18098
Score = 109 bits (120), Expect = 1e-18
Identities = 114/150 (76%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 171921 AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980
|| || | |||||||||||| || | ||||| || ||||| |||||||| ||||| |||
Sbjct 18794 AACTGCTCACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGT 18853
Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 172040
||||| ||| ||||| || ||||| || | ||||||||| | ||| || |||||
Sbjct 18854 ATTTTCCCTTTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 18913
Query 172041 CCAGTTAATGTTTTAATGAATATCTGCATT 172070
||||| | || |||| ||| || ||||||
Sbjct 18914 CCAGTAAGGGTCTTAACGAAAATTTGCATT 18943
Score = 105 bits (116), Expect = 1e-17
Identities = 109/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
||||||||||||| | | || || || ||||| ||||||||||||||||| |||||
Sbjct 17676 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGC 17735
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
||||||||| ||| ||||| || | ||||||||| | || || ||||| || || |
Sbjct 17736 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAA 17795
Query 172048 ATGTTTTAATGAATATCTGCATT 172070
|| |||| ||| || ||||||
Sbjct 17796 GAGTCTTAACGAAAATTTGCATT 17818
Score = 105 bits (116), Expect = 1e-17
Identities = 109/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
||||||||||||| | | || || || ||||| ||||||||||||||||| |||||
Sbjct 18521 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGC 18580
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
||||||||| ||| ||||| || | ||||||||| | || |||||||| || || |
Sbjct 18581 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAATGTGATGGTTTTGCCGGTGA 18640
Query 172048 ATGTTTTAATGAATATCTGCATT 172070
|| |||| || || ||||||
Sbjct 18641 GAGTCTTAACAAAAATTTGCATT 18663
Score = 100 bits (110), Expect = 5e-16
Identities = 108/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
||||||||||||| || | |||||| || || || ||||| || |||||||| || ||
Sbjct 17393 TACCAGCAAAAATCAAACGCTGTTGATCTGGAGGAATTCCCTCCTTATCTTGAATCTTCC 17452
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
||| ||||| | |||||| || | ||| ||||| | || |||||||| |||||||
Sbjct 17453 CTTTCACATTCTCAACAGTATCAGATGGTTCCACTTCCAACGTGATGGTTTTCCCAGTTA 17512
Query 172048 ATGTTTTAATGAATATCTGCATT 172070
|| |||| || |||||||||
Sbjct 17513 GGGTCTTAACAAAAATCTGCATT 17535
>seq1863
Length=625
Score = 105 bits (116), Expect = 1e-17
Identities = 109/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
||||||||||||| | | || || || ||||| ||||||||||||||||| |||||
Sbjct 431 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGC 372
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
||||||||| ||| ||||| || | ||||||||||| || || ||||| || || |
Sbjct 371 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAA 312
Query 172048 ATGTTTTAATGAATATCTGCATT 172070
|| |||| || || ||||||
Sbjct 311 GAGTCTTAACAAAAATTTGCATT 289
Score = 96.9 bits (106), Expect = 6e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
||||||||||||| | | || || || ||||| ||||||||||||||||| |||||
Sbjct 148 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGC 89
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
||||||||| ||| ||||| || | |||||||| | || || ||||| || || |
Sbjct 88 CTTTTACATTTTCTATTGTATCAGATGGCTCTACTTCCAAGGTGATCGTTTTGCCGGTAA 29
Query 172048 ATGTTTTAATGAATATCTGCATT 172070
|| |||| || || ||||||
Sbjct 28 GAGTCTTAACAAAAATTTGCATT 6
>seq5215
Length=241
Score = 102 bits (112), Expect = 1e-16
Identities = 113/151 (75%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 171920 CAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTG 171979
||||| |||||||||||||| || | ||||| || || || ||||| |||||||||||
Sbjct 86 CAATTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTG 145
Query 171980 TATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTT 172039
|||||| ||| ||||| ||| ||||| || | |||||||| | || || |||||
Sbjct 146 TATTTTTCCTTTCACATTTTCTATTGTATCAGATGGCTCTACTTCCAAGGTGATCGTTTT 205
Query 172040 ACCAGTTAATGTTTTAATGAATATCTGCATT 172070
|| || | || |||| || || ||||||
Sbjct 206 GCCGGTAAGAGTCTTAACAAAAATTTGCATT 236
>seq2524
Length=468
Score = 100 bits (110), Expect = 5e-16
Identities = 108/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
||||||||||||| | | || || || ||||| ||||||||||||||||| |||||
Sbjct 231 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGC 290
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
||||||||| ||| ||||| || | ||||||||| | || || ||||| || || |
Sbjct 291 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAA 350
Query 172048 ATGTTTTAATGAATATCTGCATT 172070
|| |||| || || ||||||
Sbjct 351 GAGTCTTAACAAAAATTTGCATT 373
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 905068669195800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |