Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24] 5,951 sequences; 50,853,738 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq54 93.3 1e-13 seq127 86.0 2e-11 >seq54 Length=223100 Score = 93.3 bits (102), Expect = 1e-13 Identities = 166/239 (69%), Gaps = 4/239 (2%) Strand=Plus/Minus Query 302607 ACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATG 302666 ||||||| || ||||| || || ||||| |||||||| | ||||| ||||| | || Sbjct 56716 ACCAGTTTCAGCGGTTTTAACCGCAGTATCGATTAGACCTTCTCGACCGCCCATTGTGTG 56657 Query 302667 GAAGAATAGCTCTTCCGGTCGT--AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGC 302724 |||||| | || |||| || |||| |||| | || | | ||||||||||| || Sbjct 56656 GAAGAAAAATTCGGACGGT-GTCAAGCCGGCCAA-ATAGCTGTTTTCAACGAAACCCCGA 56599 Query 302725 GCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTAT 302784 |||||| | |||| ||| | || || ||||| || | | ||||| | Sbjct 56598 CTCTCGGGTCCGTAGTCGTCTTTGATGAAATGAGGCAGCGTGCGATGGCGGAAGCCGAAC 56539 Query 302785 GGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 ||||| ||||| || || ||||||||||| || | ||| | |||| |||||||| || Sbjct 56538 GGGATGCGCTTGCCTTCGACGTTCTGCTGCCCAACGCAGGCTATCACTTGCGAAATGTT 56480 >seq127 Length=116374 Score = 86.0 bits (94), Expect = 2e-11 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 252559 TACATACCAAGCGCCTGCTTTCCCATAGCACTCTGGTAAGTATTTCTGGGAGACTGATTG 252618 || ||||| | |||||||||||||||||| ||||||||||||||| ||| |||||| Sbjct 18701 TAAATACCCATAGCCTGCTTTCCCATAGCAGACTGGTAAGTATTTCTTGGACTTTGATTG 18642 Query 252619 TTTTCCGGGAAAGGAATGCATGAT-GCTACAACACCGAAGATAGTGCTTGGGTGAATTTC 252677 | ||||| || ||||| || | || ||| || || || |||| || ||||| || Sbjct 18641 TGATCCGGAAATGGAAT-AATACTCGCACAAACGCCCAAAATCATGCTCGGATGAATCTC 18583 Query 252678 ACAGTG 252683 |||||| Sbjct 18582 ACAGTG 18577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471705378047487