Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24]
5,951 sequences; 50,853,738 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq332 116 3e-21
seq5215 113 4e-20
seq326 105 6e-18
seq1863 104 2e-17
seq2524 100 3e-16
seq146 87.8 2e-12
>seq332
Length=28044
Score = 116 bits (128), Expect = 3e-21
Identities = 114/147 (78%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || ||| |||| || || || || ||||| || ||| | ||||||||| | |
Sbjct 27917 ATGCAAATTTTTGTTAAGACTCTTACTGGGAAAACCATCACGTTGGAAGTAGAACCATCT 27858
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| ||| |||||| || ||| ||| || ||||| ||||| ||||| ||||| ||||||
Sbjct 27857 GATACAATAGAAAATGTGAAAGGAAAAATACAAGATAAAGAGGGAATTCCTCCGGATCAA 27798
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAG 24850
||||||||||| ||||| || || |||
Sbjct 27797 CAACGTTTGATTTTTGCTGGTAAGCAG 27771
Score = 114 bits (126), Expect = 1e-20
Identities = 111/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||| ||| | ||||| || ||||| ||||| ||||| || ||||| ||| || |
Sbjct 1585 ATGCAGATATTTGTCAAAACTCTGACCGGGAAAACCATTACTCTGGAAGTGGAACCCTCA 1526
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|||||||| |||| || || || || || || ||||| ||||| || |||||||||
Sbjct 1525 GACACAGTTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAA 1466
Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846
|||||| |||| ||||| || ||
Sbjct 1465 CAACGTCTGATTTTTGCTGGTAA 1443
Score = 114 bits (126), Expect = 1e-20
Identities = 111/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||| ||| | ||||| || ||||| ||||| ||||| || ||||| ||| || |
Sbjct 17942 ATGCAGATATTTGTCAAAACTCTGACCGGGAAAACCATTACTCTGGAAGTGGAACCCTCA 17883
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|||||||| |||| || || || || || || ||||| ||||| || |||||||||
Sbjct 17882 GACACAGTTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAA 17823
Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846
|||||| |||| ||||| || ||
Sbjct 17822 CAACGTCTGATTTTTGCTGGTAA 17800
Score = 104 bits (114), Expect = 2e-17
Identities = 111/147 (76%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || ||| |||| || || ||||| ||||| || || | ||||||||| | |
Sbjct 27638 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 27579
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| ||| |||| | |||||| || || || || || |||||||| || || ||||||
Sbjct 27578 GATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 27519
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAG 24850
||||||||||| ||||| || || |||
Sbjct 27518 CAACGTTTGATTTTTGCTGGTAAGCAG 27492
Score = 100 bits (110), Expect = 3e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || ||| |||| || || ||||| ||||| || || | ||||||||| | |
Sbjct 336 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 277
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| ||| |||| | |||||| || || ||||| ||||||||||| || || |||||
Sbjct 276 GATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAG 217
Query 24824 CAACGTTTGATCTTTGCCGG 24843
|||||| |||| ||||| ||
Sbjct 216 CAACGTCTGATTTTTGCTGG 197
Score = 100 bits (110), Expect = 3e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || ||| |||| || || ||||| ||||| || || | ||||||||| | |
Sbjct 619 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 560
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| ||| |||| | |||||| || || ||||| ||||||||||| || || |||||
Sbjct 559 GATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAG 500
Query 24824 CAACGTTTGATCTTTGCCGG 24843
|||||| |||| ||||| ||
Sbjct 499 CAACGTCTGATTTTTGCTGG 480
Score = 96.9 bits (106), Expect = 3e-15
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
||||||||| ||| | |||||| | || || ||||| ||||| || ||||| || | |
Sbjct 1254 GATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTC 1195
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
|| ||| | |||| |||||| ||||| |||||||||||||| || || || |||||
Sbjct 1194 AGATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCAGATCA 1135
Query 24823 ACAACGTTTGATCTTTGCCGG 24843
||| || | || ||||| ||
Sbjct 1134 ACAGCGGCTTATTTTTGCTGG 1114
Score = 96.9 bits (106), Expect = 3e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || ||| |||| || || ||||| ||||| || || | ||||||||| | |
Sbjct 26796 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 26737
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| ||| |||| | |||||| || || || || || |||||||| || || |||||
Sbjct 26736 GATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAG 26677
Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846
||||||||||| ||||| || ||
Sbjct 26676 CAACGTTTGATTTTTGCTGGTAA 26654
Score = 91.5 bits (100), Expect = 1e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || || |||| || || ||||| ||||| || || | ||||||||| | |
Sbjct 26514 ATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 26455
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| ||| |||| | |||||| || || || || ||||| ||||| || || |||||
Sbjct 26454 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAAGAGGGAATTCCACCAGATCAG 26395
Query 24824 CAACGTTTGATCTTTGCCGG 24843
||||||||||| ||||| ||
Sbjct 26394 CAACGTTTGATTTTTGCTGG 26375
>seq5215
Length=241
Score = 113 bits (124), Expect = 4e-20
Identities = 113/144 (78%), Gaps = 2/144 (1%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || ||| |||| || || ||||| ||||| || || | |||||||| |||| |
Sbjct 235 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGA-GCCATC 177
Query 24764 -GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
|| ||| |||||| || ||| ||| || ||||| ||||| ||||| ||||| |||||
Sbjct 176 TGATACAATAGAAAATGTGAAAGGAAAAATACAAGATAAAGAGGGAATTCCTCCGGATCA 117
Query 24823 ACAACGTTTGATCTTTGCCGGGAA 24846
|||||||||||| ||||| || ||
Sbjct 116 ACAACGTTTGATTTTTGCTGGTAA 93
>seq326
Length=30629
Score = 105 bits (116), Expect = 6e-18
Identities = 109/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||| ||| |||| || || ||||| ||||| || || | ||||||||| | |
Sbjct 18379 ATGCAGATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 18320
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| ||| |||| | |||||| || || || || || |||||||| || || ||||||
Sbjct 18319 GATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 18260
Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846
||||||||||| ||||| || ||
Sbjct 18259 CAACGTTTGATTTTTGCTGGTAA 18237
Score = 105 bits (116), Expect = 6e-18
Identities = 109/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||| ||| | ||||| || || || ||||| ||||| || ||||| ||| || |
Sbjct 19908 ATGCAGATATTTGTGAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAACCCTCT 19849
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|||||| | |||| || || || || || || ||||| ||||| || |||||||||
Sbjct 19848 GACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAA 19789
Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846
|||||| |||| ||||| || ||
Sbjct 19788 CAACGTCTGATTTTTGCTGGTAA 19766
Score = 100 bits (110), Expect = 3e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || ||| |||| || || ||||| ||||| || || | ||||||||| | |
Sbjct 18662 ATGCAAATTTTTGTTAAGACTCTCACCGGCAAAACCATCACATTGGAAGTAGAACCATCT 18603
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| ||| |||| | |||||| || || ||||| ||||||||||| || || |||||
Sbjct 18602 GATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAG 18543
Query 24824 CAACGTTTGATCTTTGCCGG 24843
|||||| |||| ||||| ||
Sbjct 18542 CAACGTCTGATTTTTGCTGG 18523
Score = 96.9 bits (106), Expect = 3e-15
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
||||||||| ||| | |||||| | || || ||||| ||||| || ||||| || | |
Sbjct 19577 GATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTC 19518
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
|| ||| | |||| |||||| ||||| |||||||||||||| || || || |||||
Sbjct 19517 AGATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCAGATCA 19458
Query 24823 ACAACGTTTGATCTTTGCCGG 24843
||| || | || ||||| ||
Sbjct 19457 ACAGCGGCTTATTTTTGCTGG 19437
Score = 95.1 bits (104), Expect = 1e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || || |||| || || ||||| ||||| || || | ||||||||| | |
Sbjct 17817 ATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 17758
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| ||| |||| | |||||| || || ||||| ||||||||||| || || |||||
Sbjct 17757 GATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAG 17698
Query 24824 CAACGTTTGATCTTTGCCGG 24843
|||||| |||| ||||| ||
Sbjct 17697 CAACGTCTGATTTTTGCTGG 17678
Score = 86.0 bits (94), Expect = 6e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || || |||| || || || || ||||| || || | ||||||||| | |
Sbjct 18097 ATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 18038
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| ||| | |||| || ||| || || || || || |||||||| || || ||||||
Sbjct 18037 GATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 17978
Query 24824 CAACGTTTGATCTTTGCCGG 24843
||||||||||| ||||| ||
Sbjct 17977 CAACGTTTGATTTTTGCTGG 17958
Score = 86.0 bits (94), Expect = 6e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || || |||| || || || || ||||| || || | ||||||||| | |
Sbjct 18942 ATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 18883
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| ||| | |||| || ||| || || || || || |||||||| || || ||||||
Sbjct 18882 GATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 18823
Query 24824 CAACGTTTGATCTTTGCCGG 24843
||||||||||| ||||| ||
Sbjct 18822 CAACGTTTGATTTTTGCTGG 18803
>seq1863
Length=625
Score = 104 bits (114), Expect = 2e-17
Identities = 109/141 (77%), Gaps = 2/141 (1%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || ||| |||| || || ||||| ||||| || || | |||||||| |||| |
Sbjct 7 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGA-GCCATC 65
Query 24764 -GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
|| ||| |||||| |||||| || || ||||| ||||||||||| || || |||||
Sbjct 66 TGATACAATAGAAAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCA 125
Query 24823 ACAACGTTTGATCTTTGCCGG 24843
|||||| |||| ||||| ||
Sbjct 126 GCAACGTCTGATTTTTGCTGG 146
Score = 100 bits (110), Expect = 3e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || ||| |||| || || ||||| ||||| || || | ||||||||| | |
Sbjct 290 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 349
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| ||| |||| | |||||| || || ||||| ||||||||||| || || |||||
Sbjct 350 GATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAG 409
Query 24824 CAACGTTTGATCTTTGCCGG 24843
|||||| |||| ||||| ||
Sbjct 410 CAACGTCTGATTTTTGCTGG 429
>seq2524
Length=468
Score = 100 bits (110), Expect = 3e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || ||| |||| || || ||||| ||||| || || | ||||||||| | |
Sbjct 372 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 313
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| ||| |||| | |||||| || || ||||| ||||||||||| || || |||||
Sbjct 312 GATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAG 253
Query 24824 CAACGTTTGATCTTTGCCGG 24843
|||||| |||| ||||| ||
Sbjct 252 CAACGTCTGATTTTTGCTGG 233
>seq146
Length=107015
Score = 87.8 bits (96), Expect = 2e-12
Identities = 96/128 (75%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 139123 TATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTG 139182
|||| |||||||| | |||| || ||| || || ||||| | |||||| |||||
Sbjct 11153 TATTGAACAATTTCTGTGCACAGGTTTGAACATTTTATAGTACCCAGATTTTGCTGATTC 11094
Query 139183 CTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTC 139242
||||| || || ||||||||||| | |||| |||||||||| ||||| | ||| | |
Sbjct 11093 GATTTTCTATTGCACGCATCTTTGTAGACCATAAACGGTGTGCCGGTTTCAATTTGAGAC 11034
Query 139243 TCTATAAT 139250
|| |||||
Sbjct 11033 TCAATAAT 11026
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449864133242280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |