Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24]
5,951 sequences; 50,853,738 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq2524 132 9e-26
seq1863 132 9e-26
seq332 132 9e-26
seq326 129 1e-24
seq117 129 1e-24
seq5215 125 1e-23
seq6 89.7 1e-12
>seq2524
Length=468
Score = 132 bits (146), Expect = 9e-26
Identities = 114/141 (81%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| || || | ||| |||||||| || |||||||| ||||||||||| || ||
Sbjct 233 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 292
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|||||||| || || |||||| |||||||||||||| || ||||| ||||| || |
Sbjct 293 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 352
Query 82791 GTCTTTACAAATATCTGCATT 82811
||||| ||||| || ||||||
Sbjct 353 GTCTTAACAAAAATTTGCATT 373
>seq1863
Length=625
Score = 132 bits (146), Expect = 9e-26
Identities = 114/141 (81%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| || || | ||| |||||||| || |||||||| ||||||||||| || ||
Sbjct 146 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 87
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
||||||||||| || |||||| || ||||||||||| || ||||| ||||| || |
Sbjct 86 TTTACATTTTCTATTGTATCAGATGGCTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 27
Query 82791 GTCTTTACAAATATCTGCATT 82811
||||| ||||| || ||||||
Sbjct 26 GTCTTAACAAAAATTTGCATT 6
Score = 129 bits (142), Expect = 1e-24
Identities = 113/141 (80%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| || || | ||| |||||||| || |||||||| ||||||||||| || ||
Sbjct 429 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 370
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|||||||| || || |||||| ||||||||||| || || ||||| ||||| || |
Sbjct 369 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 310
Query 82791 GTCTTTACAAATATCTGCATT 82811
||||| ||||| || ||||||
Sbjct 309 GTCTTAACAAAAATTTGCATT 289
>seq332
Length=28044
Score = 132 bits (146), Expect = 9e-26
Identities = 114/141 (81%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| || || | ||| |||||||| || |||||||| ||||||||||| || ||
Sbjct 480 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 539
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|||||||| || || |||||| |||||||||||||| || ||||| ||||| || |
Sbjct 540 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 599
Query 82791 GTCTTTACAAATATCTGCATT 82811
||||| ||||| || ||||||
Sbjct 600 GTCTTAACAAAAATTTGCATT 620
Score = 129 bits (142), Expect = 1e-24
Identities = 113/141 (80%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| || || | ||| |||||||| || |||||||| ||||||||||| || ||
Sbjct 197 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 256
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|||||||| || || |||||| ||||||||||| || || ||||| ||||| || |
Sbjct 257 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 316
Query 82791 GTCTTTACAAATATCTGCATT 82811
||||| ||||| || ||||||
Sbjct 317 GTCTTAACAAAAATTTGCATT 337
Score = 127 bits (140), Expect = 4e-24
Identities = 112/140 (80%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| || || | ||||||||||| || || ||||| || ||||||||||| |
Sbjct 1114 CCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCTTGCTT 1173
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|||||||||||||| ||||| || || ||||| | || ||||| || |||||||||
Sbjct 1174 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 1233
Query 82791 GTCTTTACAAATATCTGCAT 82810
|| || ||||||||||||||
Sbjct 1234 GTTTTCACAAATATCTGCAT 1253
Score = 125 bits (138), Expect = 1e-23
Identities = 116/147 (79%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 82665 TGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATC 82724
|| || |||||||| || | | ||||||||| || || |||||||||||||| || ||
Sbjct 27493 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATT 27552
Query 82725 TTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCT 82784
|| |||||||||| || || |||||| |||||||||||||| || ||||| |||||
Sbjct 27553 TTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCG 27612
Query 82785 GTCAACGTCTTTACAAATATCTGCATT 82811
|| | ||||| ||||| || ||||||
Sbjct 27613 GTAAGAGTCTTAACAAAAATTTGCATT 27639
Score = 122 bits (134), Expect = 2e-22
Identities = 115/147 (78%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 82665 TGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATC 82724
|| || |||||||| || | | ||||||||| ||||| ||||| || |||||||| ||
Sbjct 27772 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGTATT 27831
Query 82725 TTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCT 82784
||| |||| |||||||| || |||||| |||||||||||||| || || || || ||
Sbjct 27832 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAACGTGATGGTTTTCCCA 27891
Query 82785 GTCAACGTCTTTACAAATATCTGCATT 82811
|| | ||||| ||||| || ||||||
Sbjct 27892 GTAAGAGTCTTAACAAAAATTTGCATT 27918
Score = 120 bits (132), Expect = 6e-22
Identities = 113/144 (78%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| |||||||| || | | ||| ||||| || || |||||||||||||| || || ||
Sbjct 26654 TTACCAGCAAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTC 26713
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
|||||||||| || || |||||| |||||||||||||| || ||||| ||||| ||
Sbjct 26714 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTA 26773
Query 82788 AACGTCTTTACAAATATCTGCATT 82811
| ||||| ||||| || ||||||
Sbjct 26774 AGAGTCTTAACAAAAATTTGCATT 26797
Score = 120 bits (132), Expect = 6e-22
Identities = 111/141 (79%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| || || | ||| |||||||| || |||||||||||||| || || || ||
Sbjct 26940 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 26999
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|||||||| || || |||||| ||||||||||| || || ||||| ||||| || |
Sbjct 27000 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 27059
Query 82791 GTCTTTACAAATATCTGCATT 82811
||||| || || || ||||||
Sbjct 27060 GTCTTAACGAAAATTTGCATT 27080
Score = 120 bits (132), Expect = 6e-22
Identities = 113/144 (78%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| |||||||| || | | |||||||| || || |||||||||||||| || || ||
Sbjct 27217 TTACCAGCAAAAATCAAACGCTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTC 27276
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
|||||||||| || || |||||| |||||||||||||| || ||||| ||||| ||
Sbjct 27277 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTA 27336
Query 82788 AACGTCTTTACAAATATCTGCATT 82811
| ||||| ||||| || ||||||
Sbjct 27337 AGAGTCTTAACAAAAATTTGCATT 27360
Score = 107 bits (118), Expect = 4e-18
Identities = 110/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| |||||||| || || | ||||||||| || || ||||| || ||||| ||||| ||
Sbjct 1443 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 1502
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
| || |||||||||| || || ||||| ||||||| ||| || || || || |||
Sbjct 1503 CCCTTCACATTTTCAACTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCGGTC 1562
Query 82788 AACGTCTTTACAAATATCTGCATT 82811
| || || |||||||||||||||
Sbjct 1563 AGAGTTTTGACAAATATCTGCATT 1586
Score = 107 bits (118), Expect = 4e-18
Identities = 110/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| |||||||| || || | ||||||||| || || ||||| || ||||| ||||| ||
Sbjct 17800 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 17859
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
| || |||||||||| || || ||||| ||||||| ||| || || || || |||
Sbjct 17860 CCCTTCACATTTTCAACTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCGGTC 17919
Query 82788 AACGTCTTTACAAATATCTGCATT 82811
| || || |||||||||||||||
Sbjct 17920 AGAGTTTTGACAAATATCTGCATT 17943
Score = 105 bits (116), Expect = 1e-17
Identities = 108/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| || | | ||| |||||||| || ||||| || ||||| || || || ||
Sbjct 26375 CCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 26434
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|||||||| || || |||||| ||||||||||| || || ||||| ||||| || |
Sbjct 26435 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 26494
Query 82791 GTCTTTACAAATATCTGCATT 82811
||||| || || || ||||||
Sbjct 26495 GTCTTAACGAAAATTTGCATT 26515
>seq326
Length=30629
Score = 129 bits (142), Expect = 1e-24
Identities = 113/141 (80%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| || || | ||| |||||||| || |||||||| ||||||||||| || ||
Sbjct 17678 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 17737
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|||||||| || || |||||| |||||||||||||| || ||||| ||||| || |
Sbjct 17738 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 17797
Query 82791 GTCTTTACAAATATCTGCATT 82811
||||| || || || ||||||
Sbjct 17798 GTCTTAACGAAAATTTGCATT 17818
Score = 129 bits (142), Expect = 1e-24
Identities = 115/144 (80%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| |||||||| || | | ||||||||| || || |||||||||||||| || || ||
Sbjct 18237 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTC 18296
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
|||||||||| || || |||||| |||||||||||||| || ||||| ||||| ||
Sbjct 18297 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTA 18356
Query 82788 AACGTCTTTACAAATATCTGCATT 82811
| ||||| ||||| |||||||||
Sbjct 18357 AGAGTCTTAACAAAAATCTGCATT 18380
Score = 129 bits (142), Expect = 1e-24
Identities = 113/141 (80%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| || || | ||| |||||||| || |||||||| ||||||||||| || ||
Sbjct 18523 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 18582
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|||||||| || || |||||| |||||||||||||| || || || ||||| || |
Sbjct 18583 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAATGTGATGGTTTTGCCGGTGAGA 18642
Query 82791 GTCTTTACAAATATCTGCATT 82811
||||| ||||| || ||||||
Sbjct 18643 GTCTTAACAAAAATTTGCATT 18663
Score = 127 bits (140), Expect = 4e-24
Identities = 112/140 (80%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| || || | ||||||||||| || || ||||| || ||||||||||| |
Sbjct 19437 CCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCTTGCTT 19496
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|||||||||||||| ||||| || || ||||| | || ||||| || |||||||||
Sbjct 19497 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 19556
Query 82791 GTCTTTACAAATATCTGCAT 82810
|| || ||||||||||||||
Sbjct 19557 GTTTTCACAAATATCTGCAT 19576
Score = 123 bits (136), Expect = 5e-23
Identities = 112/141 (79%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| || | | |||||||||||||| ||||| ||||||||||||||||| ||
Sbjct 17395 CCAGCAAAAATCAAACGCTGTTGATCTGGAGGAATTCCCTCCTTATCTTGAATCTTCCCT 17454
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|| ||||| |||| |||||| ||||| |||||||| || || || || || || |
Sbjct 17455 TTCACATTCTCAACAGTATCAGATGGTTCCACTTCCAACGTGATGGTTTTCCCAGTTAGG 17514
Query 82791 GTCTTTACAAATATCTGCATT 82811
||||| ||||| |||||||||
Sbjct 17515 GTCTTAACAAAAATCTGCATT 17535
Score = 123 bits (136), Expect = 5e-23
Identities = 112/141 (79%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| || | | ||||||||| || || |||||||||||||| || || || ||
Sbjct 17958 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 18017
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|| ||||||||||| |||||| |||||||||||||||||||| || || || || |
Sbjct 18018 TTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCAGTAAGG 18077
Query 82791 GTCTTTACAAATATCTGCATT 82811
||||| || || || ||||||
Sbjct 18078 GTCTTAACGAAAATTTGCATT 18098
Score = 123 bits (136), Expect = 5e-23
Identities = 112/141 (79%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| || | | ||||||||| || || |||||||||||||| || || || ||
Sbjct 18803 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 18862
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|| ||||||||||| |||||| |||||||||||||||||||| || || || || |
Sbjct 18863 TTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCAGTAAGG 18922
Query 82791 GTCTTTACAAATATCTGCATT 82811
||||| || || || ||||||
Sbjct 18923 GTCTTAACGAAAATTTGCATT 18943
Score = 116 bits (128), Expect = 7e-21
Identities = 112/144 (78%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| |||||||| || || | ||||||||| || || ||||| || ||||| ||||| ||
Sbjct 19766 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 19825
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
| || ||||||||||| || ||| ||||| ||||||| ||| || || || || |||
Sbjct 19826 CCCTTCACATTTTCAATTGTGTCAGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 19885
Query 82788 AACGTCTTTACAAATATCTGCATT 82811
| || || |||||||||||||||
Sbjct 19886 AGAGTTTTCACAAATATCTGCATT 19909
>seq117
Length=123509
Score = 129 bits (142), Expect = 1e-24
Identities = 113/141 (80%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| || | || ||| ||||| || || || ||||||||||||||||| || |
Sbjct 8730 CCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTACTT 8789
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
||||||||||||||||||||| || ||||||||||| || || || || || || ||
Sbjct 8790 TTTACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAAT 8849
Query 82791 GTCTTTACAAATATCTGCATT 82811
|| || ||||| |||||||||
Sbjct 8850 GTTTTCACAAAAATCTGCATT 8870
Score = 129 bits (142), Expect = 1e-24
Identities = 115/144 (80%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| |||||||| || | || ||| ||||| || || || ||||||||||||||||| ||
Sbjct 9014 TTACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTA 9073
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
|||||||||||||||||||||| || ||||||||||| || || || || || ||
Sbjct 9074 CTTTTTACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 9133
Query 82788 AACGTCTTTACAAATATCTGCATT 82811
|| || || ||||| |||||||||
Sbjct 9134 AATGTTTTCACAAAAATCTGCATT 9157
Score = 122 bits (134), Expect = 2e-22
Identities = 115/144 (80%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| |||||||| || | || ||| ||||| || || || ||||||||||||||||| |||
Sbjct 9301 TTACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAAT-TTT 9359
Query 82728 GCTTTT-ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786
||||| ||||||||||||||||| || ||||||||||| || || || || || ||
Sbjct 9360 ACTTTTCACATTTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGT 9419
Query 82787 CAACGTCTTTACAAATATCTGCAT 82810
|| || || ||||| ||||||||
Sbjct 9420 TAATGTTTTCACAAAAATCTGCAT 9443
Score = 122 bits (134), Expect = 2e-22
Identities = 113/141 (80%), Gaps = 2/141 (1%)
Strand=Plus/Plus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| || | || ||| ||||| || || || ||||||||||||||||| ||| ||
Sbjct 9590 CCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAAT-TTTACT 9648
Query 82731 TTT-ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAA 82789
||| ||||||||||||||||| || ||||||||||| || || || || || || ||
Sbjct 9649 TTTCACATTTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAA 9708
Query 82790 CGTCTTTACAAATATCTGCAT 82810
|| || ||||| ||||||||
Sbjct 9709 TGTTTTCACAAAAATCTGCAT 9729
Score = 116 bits (128), Expect = 7e-21
Identities = 116/148 (78%), Gaps = 2/148 (1%)
Strand=Plus/Plus
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| || |||||||||| |||||| ||||| ||||| || ||||||||||| ||||| |||
Sbjct 10269 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAAT-TTT 10327
Query 82728 GCTTTT-ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786
||||| |||||||| || || || ||||| ||||| | ||||| || || || ||
Sbjct 10328 ACTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGT 10387
Query 82787 CAACGTCTTTACAAATATCTGCATTATT 82814
| ||||| || ||||||||||| |||
Sbjct 10388 AAGTGTCTTCACGAATATCTGCATAATT 10415
>seq5215
Length=241
Score = 125 bits (138), Expect = 1e-23
Identities = 114/144 (79%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| |||||||| || | | ||||||||| ||||| ||||| || |||||||| || |||
Sbjct 93 TTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGTATTTTT 152
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
|||| |||||||| || |||||| || ||||||||||| || ||||| ||||| ||
Sbjct 153 CCTTTCACATTTTCTATTGTATCAGATGGCTCTACTTCCAAGGTGATCGTTTTGCCGGTA 212
Query 82788 AACGTCTTTACAAATATCTGCATT 82811
| ||||| ||||| || ||||||
Sbjct 213 AGAGTCTTAACAAAAATTTGCATT 236
>seq6
Length=459386
Score = 89.7 bits (98), Expect = 1e-12
Identities = 82/104 (79%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCC 82766
|||||||| || ||||| || || || ||||| | ||| |||||| ||| || ||||||
Sbjct 122454 CCTTCCTTGTCCTGAATTTTAGCCTTCACATTCTGAATTGTATCAGAAGGCTCCACTTCC 122395
Query 82767 AAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||||| || ||||| ||||| | || || |||||||| |||||
Sbjct 122394 AAAGTGATGGTCTTTCCTGTTAGGGTTTTCACAAATATTTGCAT 122351
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981752338437389
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |