Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24] 5,951 sequences; 50,853,738 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq146 102 2e-16 >seq146 Length=107015 Score = 102 bits (112), Expect = 2e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 112644 GCAAAACATTCTAATAACAAGCATAGACCAATTGGCATTGGCGTACAAGGATTAGCTGAT 112703 ||| || | ||||| || ||| |||||||||| ||||| ||||||||||| || ||| Sbjct 11461 GCAGAAAAGTCTAACAAACGTCATCGACCAATTGGTATTGGTGTACAAGGATTGGCGGAT 11520 Query 112704 GTATTTATGATGATGCGAATTCCTTTTGATTCTGACCGTGCTAAATTCTTAAATGAAAAG 112763 | ||||| |||||||| ||| ||||| || || |||| ||| || ||| | || Sbjct 11521 GCTTTTATTTTGATGCGATATCCGTTTGAATCCGAAGAAGCTAGATTGTTGAATAAGAAA 11580 Query 112764 ATTTTCGAAACAATCTATTTCGCTGC 112789 ||||| ||||| ||||||| ||||| Sbjct 11581 ATTTTTGAAACCATCTATTATGCTGC 11606 Score = 96.9 bits (106), Expect = 8e-15 Identities = 173/249 (69%), Gaps = 4/249 (2%) Strand=Plus/Plus Query 110743 AGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCT 110802 ||||| ||| | ||||| ||||| | ||||||||||| |||| |||||||| || Sbjct 10664 AGAGACCTGGGGCGTTTGCGGTCTATTTGGAACCTTGGCACGCAGACATATTTGATTTTC 10723 Query 110803 TAGAACTTCGTAAAA-ATCA-AGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGC 110860 | || || |||| | || ||| | |||||| | |||| || ||||| |||||||| Sbjct 10724 TTGA--CGCGAAAAAGAACACAGGCGTCGAAGAAAACCGAGCCCGAGATTTGTTTTATGC 10781 Query 110861 AATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTAT 110920 | ||||| | ||| |||||||||| || || ||| | || ||||| || || Sbjct 10782 CCTCTGGATACCTGATCTATTCATGAAGCGCATTGAAGCCGACGGAGATTGGTCACTGAT 10841 Query 110921 GTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTA 110980 ||| |||||| | |||||| | | ||| | | || | ||||||||| | | || Sbjct 10842 GTGCCCTCATGAATGTCCTGGATTGGCGGATTTGTGGGGCGATGAGTTTGAAAAATTATA 10901 Query 110981 CGAAAAATA 110989 |||||| || Sbjct 10902 CGAAAAGTA 10910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186722308861911