Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24]
5,951 sequences; 50,853,738 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq263 132 7e-25
>seq263
Length=55217
Score = 132 bits (146), Expect = 7e-25
Identities = 237/338 (70%), Gaps = 10/338 (3%)
Strand=Plus/Plus
Query 1455979 GAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTAC 1456038
||||||||||| || || || ||||| || ||||| ||||| |||| || |||| |||
Sbjct 23465 GAGGCACGTTTTTTCTATGGCTTCCAAATTGCCATAGAAAATGTCCATTCCGAAATGTAC 23524
Query 1456039 TCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCC 1456098
||| |||||||||||||| || || ||||| ||| || || || |||
Sbjct 23525 AGCCTCTTGATCGACACCTACATCCGTGATCCGGTGGAGCGTGATTTTCTGTTCAACGCG 23584
Query 1456099 ATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAG 1456158
||||| || | |||| |||| |||||| || |||||||| || ||||| |
Sbjct 23585 ATCGAGACCATTCCGTGCGTGAAGAAAAAAGCAGACTGGGCTTTGCGCTGGAT---CGGT 23641
Query 1456159 GAGGGCC--TCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTT 1456215
|| | | ||| || |||| ||| || | |||| || || || || || ||||| ||
Sbjct 23642 GACCGTCAGTCGCCATTTTG-CGAACGTTTGGTCGCGTTCGCAGCTGTTGAAGGCATTTT 23700
Query 1456216 TTTCTCGGGCAGTTTCTGCG-CCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTC 1456274
|| || ||||| ||| ||| | || || ||| | || ||||||||||| |||||||||
Sbjct 23701 CTTTTCCGGCAGCTTC-GCGTCAATTTTCTGGTTGAAAAAGCGCGGCCTGATGCCCGGT- 23758
Query 1456275 TTCTGCTTTAGCAACGAATTTATCAGTCGCGACGAAGT 1456312
|| || |||||||| | ||| ||| ||||| ||
Sbjct 23759 TTGACGTTCAGCAACGAGCTGATCTCTCGTGACGAGGT 23796
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177237215112062
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |