Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24] 5,951 sequences; 50,853,738 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq332 109 6e-19 seq326 105 7e-18 seq2524 102 8e-17 seq1863 102 8e-17 seq263 96.9 4e-15 seq5215 93.3 4e-14 seq117 84.2 2e-11 >seq332 Length=28044 Score = 109 bits (120), Expect = 6e-19 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || |||||||||| ||| || |||||||| || || || ||||| || |||||||| Sbjct 1443 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 1502 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 || || || | |||||| || | |||||| || |||||||||||||| ||||| Sbjct 1503 CCCTTCACATTTTCAACTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCGGTC 1562 Query 134691 AAAGTTTTAACGAAAATTTGCATTT 134715 | |||||| || || || ||||||| Sbjct 1563 AGAGTTTTGACAAATATCTGCATTT 1587 Score = 109 bits (120), Expect = 6e-19 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || |||||||||| ||| || |||||||| || || || ||||| || |||||||| Sbjct 17800 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 17859 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 || || || | |||||| || | |||||| || |||||||||||||| ||||| Sbjct 17860 CCCTTCACATTTTCAACTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCGGTC 17919 Query 134691 AAAGTTTTAACGAAAATTTGCATTT 134715 | |||||| || || || ||||||| Sbjct 17920 AGAGTTTTGACAAATATCTGCATTT 17944 Score = 102 bits (112), Expect = 8e-17 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || |||||||||| ||| |||||||| || || || |||||||| ||||||||||| | Sbjct 197 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 256 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||| || || | ||| || || | || || ||||| ||||| | | Sbjct 257 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 316 Query 134694 GTTTTAACGAAAATTTGCATT 134714 || ||||| |||||||||||| Sbjct 317 GTCTTAACAAAAATTTGCATT 337 Score = 102 bits (112), Expect = 8e-17 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || |||||||||| ||| |||||||| || || || |||||||| ||||||||||| | Sbjct 480 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 539 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||| || || | ||| || || | || || ||||| ||||| | | Sbjct 540 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 599 Query 134694 GTTTTAACGAAAATTTGCATT 134714 || ||||| |||||||||||| Sbjct 600 GTCTTAACAAAAATTTGCATT 620 Score = 100 bits (110), Expect = 3e-16 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 134567 CTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAAT 134626 ||| || || |||||||||||||| || ||||| || || || || ||||| ||||| || Sbjct 27771 CTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGTAT 27830 Query 134627 TTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACC 134686 |||| ||| || || | ||| || || | ||| || || | || |||||||| || Sbjct 27831 TTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAACGTGATGGTTTTCCC 27890 Query 134687 GGTTAAAGTTTTAACGAAAATTTGCATT 134714 || | ||| ||||| |||||||||||| Sbjct 27891 AGTAAGAGTCTTAACAAAAATTTGCATT 27918 Score = 96.9 bits (106), Expect = 4e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || |||||||||||||| |||||||| || || || || ||||| || || ||||| | Sbjct 26375 CCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 26434 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||| || || | ||| || || | || || ||||| ||||| | | Sbjct 26435 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 26494 Query 134694 GTTTTAACGAAAATTTGCATT 134714 || |||||||||||||||||| Sbjct 26495 GTCTTAACGAAAATTTGCATT 26515 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || |||||||||||||| |||||||| || || || ||||| || || || ||||| Sbjct 26654 TTACCAGCAAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTC 26713 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 ||| || || | ||| || || | ||| || || | || || ||||| ||||| Sbjct 26714 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTA 26773 Query 134691 AAAGTTTTAACGAAAATTTGCATT 134714 | ||| ||||| |||||||||||| Sbjct 26774 AGAGTCTTAACAAAAATTTGCATT 26797 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || |||||||||| ||| |||||||| || || || ||||| || || || ||||| | Sbjct 26940 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 26999 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||| || || | ||| || || | || || ||||| ||||| | | Sbjct 27000 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 27059 Query 134694 GTTTTAACGAAAATTTGCATT 134714 || |||||||||||||||||| Sbjct 27060 GTCTTAACGAAAATTTGCATT 27080 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || ||||||||||||||||| ||||| || || || ||||| || || || ||||| Sbjct 27217 TTACCAGCAAAAATCAAACGCTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTC 27276 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 ||| || || | ||| || || | ||| || || | || || ||||| ||||| Sbjct 27277 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTA 27336 Query 134691 AAAGTTTTAACGAAAATTTGCATT 134714 | ||| ||||| |||||||||||| Sbjct 27337 AGAGTCTTAACAAAAATTTGCATT 27360 Score = 91.5 bits (100), Expect = 1e-13 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 134567 CTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAAT 134626 ||| || || |||||||||||||| || ||||| || || || ||||| || || || || Sbjct 27492 CTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTAT 27551 Query 134627 TTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACC 134686 ||| ||| || || | ||| || || | ||| || || | || || ||||| || Sbjct 27552 TTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCC 27611 Query 134687 GGTTAAAGTTTTAACGAAAATTTGCATT 134714 ||| | ||| ||||| |||||||||||| Sbjct 27612 GGTAAGAGTCTTAACAAAAATTTGCATT 27639 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || |||||||| | ||||| ||||| || || ||||||||||| |||||||| || | Sbjct 1114 CCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCTTGCTT 1173 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||| || |||| || || || || ||||| ||||| || || || Sbjct 1174 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 1233 Query 134694 GTTTTAACGAAAATTTGCAT 134713 ||||| || || || ||||| Sbjct 1234 GTTTTCACAAATATCTGCAT 1253 >seq326 Length=30629 Score = 105 bits (116), Expect = 7e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || |||||||||| ||| |||||||| || || || |||||||| ||||||||||| | Sbjct 17678 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 17737 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||| || || | ||| || || | || || ||||| ||||| | | Sbjct 17738 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 17797 Query 134694 GTTTTAACGAAAATTTGCATT 134714 || |||||||||||||||||| Sbjct 17798 GTCTTAACGAAAATTTGCATT 17818 Score = 105 bits (116), Expect = 7e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || |||||||||| ||| |||||||| || || || |||||||| ||||||||||| | Sbjct 18523 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 18582 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||| || || | ||| || || | || |||||||| ||||| | | Sbjct 18583 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAATGTGATGGTTTTGCCGGTGAGA 18642 Query 134694 GTTTTAACGAAAATTTGCATT 134714 || ||||| |||||||||||| Sbjct 18643 GTCTTAACAAAAATTTGCATT 18663 Score = 105 bits (116), Expect = 7e-18 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || |||||||||| ||| || |||||||| || || || ||||| || |||||||| Sbjct 19766 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 19825 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 || || || | |||||| || | |||||| || |||||||||||||| || || Sbjct 19826 CCCTTCACATTTTCAATTGTGTCAGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 19885 Query 134691 AAAGTTTTAACGAAAATTTGCATTTT 134716 | |||||| || || || |||||||| Sbjct 19886 AGAGTTTTCACAAATATCTGCATTTT 19911 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || ||||||||||||||||| ||||| || || || || || || |||||||| || | Sbjct 17395 CCAGCAAAAATCAAACGCTGTTGATCTGGAGGAATTCCCTCCTTATCTTGAATCTTCCCT 17454 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | || || || | |||||| || | || |||||||| || |||| Sbjct 17455 TTCACATTCTCAACAGTATCAGATGGTTCCACTTCCAACGTGATGGTTTTCCCAGTTAGG 17514 Query 134694 GTTTTAACGAAAATTTGCATT 134714 || ||||| ||||| |||||| Sbjct 17515 GTCTTAACAAAAATCTGCATT 17535 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || |||||||||||||| || ||||| || || || ||||| || || || ||||| | Sbjct 17958 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 18017 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||| || || | ||| || || | ||| || ||||| || || | Sbjct 18018 TTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCAGTAAGG 18077 Query 134694 GTTTTAACGAAAATTTGCATT 134714 || |||||||||||||||||| Sbjct 18078 GTCTTAACGAAAATTTGCATT 18098 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || |||||||||||||| || ||||| || || || ||||| || || || ||||| | Sbjct 18803 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 18862 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||| || || | ||| || || | ||| || ||||| || || | Sbjct 18863 TTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCAGTAAGG 18922 Query 134694 GTTTTAACGAAAATTTGCATT 134714 || |||||||||||||||||| Sbjct 18923 GTCTTAACGAAAATTTGCATT 18943 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || |||||||| | ||||| ||||| || || ||||||||||| |||||||| || | Sbjct 19437 CCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCTTGCTT 19496 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||| || |||| || || || || ||||| ||||| || || || Sbjct 19497 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 19556 Query 134694 GTTTTAACGAAAATTTGCAT 134713 ||||| || || || ||||| Sbjct 19557 GTTTTCACAAATATCTGCAT 19576 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || |||||||||||||| || ||||| || || || ||||| || || || ||||| Sbjct 18237 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTC 18296 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 ||| || || | ||| || || | ||| || || | || || ||||| ||||| Sbjct 18297 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTA 18356 Query 134691 AAAGTTTTAACGAAAATTTGCATT 134714 | ||| ||||| ||||| |||||| Sbjct 18357 AGAGTCTTAACAAAAATCTGCATT 18380 >seq2524 Length=468 Score = 102 bits (112), Expect = 8e-17 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || |||||||||| ||| |||||||| || || || |||||||| ||||||||||| | Sbjct 233 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 292 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||| || || | ||| || || | || || ||||| ||||| | | Sbjct 293 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 352 Query 134694 GTTTTAACGAAAATTTGCATT 134714 || ||||| |||||||||||| Sbjct 353 GTCTTAACAAAAATTTGCATT 373 >seq1863 Length=625 Score = 102 bits (112), Expect = 8e-17 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || |||||||||| ||| |||||||| || || || |||||||| ||||||||||| | Sbjct 429 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 370 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||| || || | ||| || || | || || ||||| ||||| | | Sbjct 369 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 310 Query 134694 GTTTTAACGAAAATTTGCATT 134714 || ||||| |||||||||||| Sbjct 309 GTCTTAACAAAAATTTGCATT 289 Score = 96.9 bits (106), Expect = 4e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || |||||||||| ||| |||||||| || || || |||||||| ||||||||||| | Sbjct 146 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 87 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||| || || | || || || | || || ||||| ||||| | | Sbjct 86 TTTACATTTTCTATTGTATCAGATGGCTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 27 Query 134694 GTTTTAACGAAAATTTGCATT 134714 || ||||| |||||||||||| Sbjct 26 GTCTTAACAAAAATTTGCATT 6 >seq263 Length=55217 Score = 96.9 bits (106), Expect = 4e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 21743 CCTCGTCGCGCGAAATCAATTCGTTGCTGAACGTGAGACCGGGCATTAAACCTCGATTTT 21802 ||||||| || || |||| |||||||||||||| | ||||||||| | || || |||| Sbjct 23795 CCTCGTCACGAGAGATCAGCTCGTTGCTGAACGTCAAACCGGGCATCAGGCCGCGCTTTT 23736 Query 21803 TAATGTAAAAAATTGCCGCAAAGCTACCGGaaaaaaaCACGCCCTCCACAATGGCGAACG 21862 | | | ||||||| ||| ||||| |||||||| || | ||| || ||| ||||||| Sbjct 23735 TCAACCAGAAAATTGACGCGAAGCTGCCGGAAAAGAAAATGCCTTCAACAGCTGCGAACG 23676 Query 21863 CCACCA 21868 | |||| Sbjct 23675 CGACCA 23670 >seq5215 Length=241 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || |||||||||||||| || ||||| || || || || ||||| ||||| |||||| Sbjct 93 TTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGTATTTTT 152 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 ||| || || | ||| || || | || || || | || || ||||| ||||| Sbjct 153 CCTTTCACATTTTCTATTGTATCAGATGGCTCTACTTCCAAGGTGATCGTTTTGCCGGTA 212 Query 134691 AAAGTTTTAACGAAAATTTGCATT 134714 | ||| ||||| |||||||||||| Sbjct 213 AGAGTCTTAACAAAAATTTGCATT 236 >seq117 Length=123509 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || ||||| ||||| || |||||||| || || |||||||| || ||||||||||| | Sbjct 8730 CCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTACTT 8789 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | || || || | || || || | || || ||||| || ||||| Sbjct 8790 TTTACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAAT 8849 Query 134694 GTTTTAACGAAAATTTGCATT 134714 ||||| || ||||| |||||| Sbjct 8850 GTTTTCACAAAAATCTGCATT 8870 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || ||||| ||||| || |||||||| || || |||||||| || ||||||||||| Sbjct 9014 TTACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTA 9073 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 ||| || || | || || || | || || || | || || ||||| || ||| Sbjct 9074 CTTTTTACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 9133 Query 134691 AAAGTTTTAACGAAAATTTGCATT 134714 || ||||| || ||||| |||||| Sbjct 9134 AATGTTTTCACAAAAATCTGCATT 9157 Score = 82.4 bits (90), Expect = 8e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || ||||| ||||| || |||||||| || || |||||||| || ||||||||||| Sbjct 9301 TTACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTA 9360 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 ||| || || | || || || | || || || | || || ||||| || ||| Sbjct 9361 CTTTTCACATTTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 9420 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 || ||||| || ||||| ||||| Sbjct 9421 AATGTTTTCACAAAAATCTGCAT 9443 Score = 82.4 bits (90), Expect = 8e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || ||||| ||||| || |||||||| || || |||||||| || ||||||||||| | Sbjct 9590 CCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTACTT 9649 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | || || || | || || || | || || ||||| || ||||| Sbjct 9650 TTCACATTTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAAT 9709 Query 134694 GTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| ||||| Sbjct 9710 GTTTTCACAAAAATCTGCAT 9729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505360804676520