Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24]
5,951 sequences; 50,853,738 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq146 125 1e-23
>seq146
Length=107015
Score = 125 bits (138), Expect = 1e-23
Identities = 143/192 (74%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 68394 TGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAA 68453
||| || || || | | ||||||||| || ||||||||||| |||| ||||||||
Sbjct 12363 TGCCGGCTTGGTTCTCAAATAGTACATCCCAGTTTTCAGACCCTTCTTCCAGCCGTAGAA 12304
Query 68454 ATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACT 68513
|||||| ||| | ||| | |||| | || |||||||| |||||||||| ||| ||
Sbjct 12303 ATGCATTGATGTCAATTTAGCATAATTCGGCTCGGCTATGTGAATATTCAACGACTGGGA 12244
Query 68514 TTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTC 68573
||| || ||||| ||||| || || || ||||| | ||| | | ||||| | ||||||
Sbjct 12243 TTGGTCAATGAATGCTCCCCTTTCAGCGGCCATGTCTATGACGCATTTTTGGGAAATTTC 12184
Query 68574 CCAAATAGTCTT 68585
||||| |||||
Sbjct 12183 CCAAACCGTCTT 12172
Score = 109 bits (120), Expect = 8e-19
Identities = 152/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 69516 TTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGA 69575
||| || ||||| ||||| | ||| |||||||||||||||||| || ||||||| |||
Sbjct 10893 TTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCATGAGGGCACATCAGTGA 10834
Query 69576 CCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAA 69635
||| | | || | | || || ||||| |||||||| || ||||| || || |||
Sbjct 10833 CCAATCTCCGTCGGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAGAGGGCATAAAA 10774
Query 69636 GAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCAT 69695
| ||||| || || |||||||| ||||| || ||||| || ||||| || |
Sbjct 10773 CAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAGAAAATCAAA 10714
Query 69696 AATATCAGAATGCCATGGTTCTAGATATATCGC 69728
|| || | ||||| ||||| | ||| | |||
Sbjct 10713 TATGTCTGCGTGCCAAGGTTCCAAATAGACCGC 10681
Score = 93.3 bits (102), Expect = 6e-14
Identities = 98/129 (76%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 69315 ATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATT 69374
|||||| | || ||||| || || || |||||| ||||| |||||||||||||||||
Sbjct 11154 ATATTGAACAATTTCTGTGCACAGGTTTGAACATTTTATAGTACCCAGATTTTGCTGATT 11095
Query 69375 ACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGA 69434
||| | || || || || ||||| | |||||||| || || |||||||| |||||
Sbjct 11094 CGATTTTCTATTGCACGCATCTTTGTAGACCATAAACGGTGTGCCGGTTTCAATTTGAGA 11035
Query 69435 TTCGATAAT 69443
|| |||||
Sbjct 11034 CTCAATAAT 11026
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686857702571640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |