Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24]
5,951 sequences; 50,853,738 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq332 96.9 3e-15
seq326 91.5 1e-13
seq263 84.2 2e-11
>seq332
Length=28044
Score = 96.9 bits (106), Expect = 3e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 27105 TTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTG 27164
||||| || |||| ||||| |||||||| || || | ||||||||||| || ||
Sbjct 1443 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 1502
Query 27165 TTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTC 27224
|||| |||| || ||||||| || ||| ||||| ||||| || | ||| || |||
Sbjct 1503 CCCTTCACATTTTCAACTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCGGTC 1562
Query 27225 AGAGTTTTCACAAAGATTTGCAT 27247
|||||||| ||||| || |||||
Sbjct 1563 AGAGTTTTGACAAATATCTGCAT 1585
Score = 96.9 bits (106), Expect = 3e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 27105 TTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTG 27164
||||| || |||| ||||| |||||||| || || | ||||||||||| || ||
Sbjct 17800 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 17859
Query 27165 TTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTC 27224
|||| |||| || ||||||| || ||| ||||| ||||| || | ||| || |||
Sbjct 17860 CCCTTCACATTTTCAACTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCGGTC 17919
Query 27225 AGAGTTTTCACAAAGATTTGCAT 27247
|||||||| ||||| || |||||
Sbjct 17920 AGAGTTTTGACAAATATCTGCAT 17942
>seq326
Length=30629
Score = 91.5 bits (100), Expect = 1e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 27105 TTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTG 27164
||||| || |||| ||||| |||||||| || || | ||||||||||| || ||
Sbjct 19766 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 19825
Query 27165 TTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTC 27224
|||| |||| | ||||| | || ||| ||||| ||||| || | ||| || |||
Sbjct 19826 CCCTTCACATTTTCAATTGTGTCAGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 19885
Query 27225 AGAGTTTTCACAAAGATTTGCAT 27247
|||||||||||||| || |||||
Sbjct 19886 AGAGTTTTCACAAATATCTGCAT 19908
>seq263
Length=55217
Score = 84.2 bits (92), Expect = 2e-11
Identities = 66/79 (84%), Gaps = 0/79 (0%)
Strand=Plus/Minus
Query 108257 TCTTGTACTCGCCGACGCGTCTTTCGAAAAAGTTGGTTTTGCCTTCTAGCGAAATCATGT 108316
||| ||| |||||||||||| ||||||||||||| ||||| ||||| |||||||||| |
Sbjct 24274 TCTGGTATTCGCCGACGCGTTTTTCGAAAAAGTTCGTTTTACCTTCCAGCGAAATCAATT 24215
Query 108317 TCATAAAATGAAAGGGATT 108335
|||||| | || |||||
Sbjct 24214 CCATAAAGTCGAACGGATT 24196
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424903580437512
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |