Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24] 5,951 sequences; 50,853,738 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq282 363 5e-95 seq117 156 1e-32 seq69 156 1e-32 seq326 147 7e-30 seq2524 141 3e-28 seq1863 141 3e-28 seq332 141 3e-28 seq5215 120 9e-22 seq6 98.7 3e-15 seq127 89.7 2e-12 >seq282 Length=46907 Score = 363 bits (402), Expect = 5e-95 Identities = 565/804 (70%), Gaps = 5/804 (1%) Strand=Plus/Plus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 ||||| ||||| ||||| |||||||| || |||||||| || | || ||| | Sbjct 11257 GCTATTGGAATTGATTTGGGTACTACGTACAGTTGTGTTGGCGTGTTCCAGCATGGTAAA 11316 Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 || ||||| ||||| || |||||||| || | || |||||| || ||||| || ||| Sbjct 11317 GTTGAAATTATTGCCAACGATCAAGGGAATCGTACCACGCCAAGTTATGTTGCTTTCACC 11376 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || || || || ||||||| ||| | ||||||||||||| ||| ||||| | ||| Sbjct 11377 GATACCGAACGACTGATTGGAGATGCGGCAAAAAATCAAGTTGCGTTGAATCCTCATAAT 11436 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCT 349438 || ||||||||||| |||||||| || ||| | | ||| ||| | || ||| Sbjct 11437 ACAGTTTTTGATGCGAAGCGACTCATCGGTCGTCGATTTGATGATGCTGCGGTGCAGTCT 11496 Query 349439 GATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAG 349498 ||| | ||||||| || || | || | || || || ||||| | ||| | Sbjct 11497 GATATGAAACATTGGCCATTCAAAATTATC---AACGATGGATCGAAACCTAAAATTCAA 11553 Query 349499 GTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTA 349558 || ||||| ||||| || || |||| ||| |||||||| | ||||| ||| Sbjct 11554 GTCGAATACAAAGGCGAGTCGAAGTCATTTACACCAGAAGAAATCAGTGCTATGGTGTTA 11613 Query 349559 GTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATT 349618 || || |||||||||| ||| ||||| ||||| || |||| || | ||||| || ||| Sbjct 11614 GTGAAGATGAAGGAAACTGCCGAAGCTTATTTGGGAAAAACTGTTAAGGATGCCGTAATT 11673 Query 349619 ACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATT 349678 ||||| || || |||||||| ||| | |||||| || || ||||| ||||| | ||| Sbjct 11674 ACTGTTCCGGCATATTTTAACGATTCTCAGCGTCAGGCGACCAAAGACGCTGGAACGATT 11733 Query 349679 GCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGG 349738 | || || |||||| | | || || || ||||| || || || |||||||| ||||| Sbjct 11734 TCTGGTTTGAATGTTTTGCGTATCATCAACGAACCAACAGCGGCTGCAATTGCTTATGGA 11793 Query 349739 CTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACT 349798 ||||||| || | ||| | ||| |||| |||| || ||||| | |||||||||||| Sbjct 11794 CTTGATAGAAAGGGTGGCGGTGAACGAAATGTTCTGATATTTGACCTTGGTGGTGGTACT 11853 Query 349799 TTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGT 349858 |||||||| || | | || | ||||| || |||||||| || || | || |||||| Sbjct 11854 TTTGATGTGTCTATTTTGACCATCGAAGATGGCATTTTTGAGGTCAAGTCTACCGCTGGT 11913 Query 349859 GATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAA 349918 || || ||| | ||||| || || || || ||||| | || ||||| || || Sbjct 11914 GACACTCATTTGGGTGGTGAGGACTTCGACAATCGCATGGTAAATCATTTCGTGGCCGAG 11973 Query 349919 TTTAAGCGTCAAG-CTAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAG 349977 |||||||| |||| || | || || | |||||| | ||| |||||||| | | Sbjct 11974 TTTAAGCG-CAAGAACAAGAAGGACATGTCATCTAATCCACGCGCATTGCGTCGCTTGCG 12032 Query 349978 AACTGCGTGTGAACGTGCTAAGCG 350001 || || |||||||| || ||||| Sbjct 12033 CACAGCTTGTGAACGAGCGAAGCG 12056 Score = 102 bits (112), Expect = 2e-16 Identities = 190/277 (69%), Gaps = 4/277 (1%) Strand=Plus/Plus Query 350030 ATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGG 350089 ||||||||| || || || |||| ||||||| | |||||||| | ||||| Sbjct 12141 ATTGAAATTAATAGCCTCTACGAAGGCATTGATTTCTACACCACTATTACAAGAGCTCGC 12200 Query 350090 TTTGAAGAATTATGTATG--GATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTAT 350147 || ||||| || | ||| || | || | | || |||| || || ||||||| Sbjct 12201 TTCGAAGAGTT--GAATGCTGACTTGTTCCGTTCTACTTTGGAACCAGTAGAAAAAGCTC 12258 Query 350148 TAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTA 350207 | ||||| ||| | |||| |||| ||||||| ||||| || || ||||||| Sbjct 12259 TTCGTGATGCGAAATTAGACAAAGCAGTGATTCATGAAGTTGTTTTGGTGGGCGGTTCTA 12318 Query 350208 CACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTA 350267 | || ||||| |||||||| |||| | || ||||||||||| ||||||| | | Sbjct 12319 CTCGCATTCCTAAAGTTCAGAAGTTGTTGCAAGATTTTTTTAATGGAAAAGAACTTAACA 12378 Query 350268 GATCAATTAATCCAGATGAAGCTGTTGCATATGGTGC 350304 | || ||||| || ||||||||||| ||||| || Sbjct 12379 AAAGCATCAATCCTGACGAAGCTGTTGCCTATGGAGC 12415 Score = 96.9 bits (106), Expect = 1e-14 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 183570 TTAGCTCGTTCACATGCTGTTCTTAGTCGACGTAATGATCTTGGATTATCTGTAATATCT 183629 || ||||||||||| ||||| | | ||||| |||| | ||||||| || || || Sbjct 12053 TTCGCTCGTTCACAAGCTGTGCGCAAGCGACGCAATGCGCGTGGATTAGATGACATGTCC 11994 Query 183630 TGTTTATGTTTTCTTTTAAATTCAGTAATAAAATGTTGAAGTAATCTTGTATCAAAATCT 183689 | || | || | ||||| || | | ||||| | | | | | || || || Sbjct 11993 TTCTTGTTCTTGCGCTTAAACTCGGCCACGAAATGATTTACCATGCGATTGTCGAAGTCC 11934 Query 183690 TCACCACCTAAATGTGTATCGCCAGCAGTAGCTTTAACTTCAAATATTCCGTCTTCAATA 183749 |||||||| ||||| || || ||||| |||| || || ||||| || || ||||| || Sbjct 11933 TCACCACCCAAATGAGTGTCACCAGCGGTAGACTTGACCTCAAAAATGCCATCTTCGATG 11874 Query 183750 TTTAAAATTGATACATCAAATGTACCACCACCCAAATCAAA 183790 | ||||| || |||||||| ||||||||||| | ||||| Sbjct 11873 GTCAAAATAGACACATCAAAAGTACCACCACCAAGGTCAAA 11833 >seq117 Length=123509 Score = 156 bits (172), Expect = 1e-32 Identities = 119/141 (84%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || | |||||||||||||| ||||| ||||| ||||| ||||||||| | Sbjct 8730 CCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTACTT 8789 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 |||||||| ||||||| ||||||||| || ||||| | ||| | ||| ||||| |||| | Sbjct 8790 TTTACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAAT 8849 Query 140718 GTTTTTACAAAAATCTGCATT 140738 ||||| ||||||||||||||| Sbjct 8850 GTTTTCACAAAAATCTGCATT 8870 Score = 156 bits (172), Expect = 1e-32 Identities = 121/144 (84%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || |||||||| || | |||||||||||||| ||||| ||||| ||||| ||||||||| Sbjct 9014 TTACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTA 9073 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 ||||||||| ||||||| ||||||||| || ||||| | ||| | ||| ||||| ||| Sbjct 9074 CTTTTTACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 9133 Query 140715 AGTGTTTTTACAAAAATCTGCATT 140738 | |||||| ||||||||||||||| Sbjct 9134 AATGTTTTCACAAAAATCTGCATT 9157 Score = 145 bits (160), Expect = 2e-29 Identities = 118/143 (83%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || |||||||| || | |||||||||||||| ||||| ||||| ||||| ||||||||| Sbjct 9301 TTACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTA 9360 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 ||| ||||| ||||||| ||| ||||| || ||||| | ||| | ||| ||||| ||| Sbjct 9361 CTTTTCACATTTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 9420 Query 140715 AGTGTTTTTACAAAAATCTGCAT 140737 | |||||| |||||||||||||| Sbjct 9421 AATGTTTTCACAAAAATCTGCAT 9443 Score = 145 bits (160), Expect = 2e-29 Identities = 116/140 (83%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || | |||||||||||||| ||||| ||||| ||||| ||||||||| | Sbjct 9590 CCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTACTT 9649 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| ||||||| ||| ||||| || ||||| | ||| | ||| ||||| |||| | Sbjct 9650 TTCACATTTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAAT 9709 Query 140718 GTTTTTACAAAAATCTGCAT 140737 ||||| |||||||||||||| Sbjct 9710 GTTTTCACAAAAATCTGCAT 9729 Score = 136 bits (150), Expect = 1e-26 Identities = 116/143 (81%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || || |||||||||| | |||||||||||||||||| ||||| ||||||||||||||| Sbjct 10269 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 10328 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 ||| ||||| || || | || |||||||||||||| ||||| | || ||||| || Sbjct 10329 CTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 10388 Query 140715 AGTGTTTTTACAAAAATCTGCAT 140737 ||||| || || || |||||||| Sbjct 10389 AGTGTCTTCACGAATATCTGCAT 10411 >seq69 Length=193012 Score = 156 bits (172), Expect = 1e-32 Identities = 328/485 (68%), Gaps = 8/485 (2%) Strand=Plus/Minus Query 349233 GTGTTGCTGTTTGGCAAAATGATCGTGTAGAAATAATTGCAAATGATCAAGGTAACAGAA 349292 |||||| |||| | |||| |||||| ||||| ||||| |||||||| || || ||| Sbjct 144102 GTGTTGGGGTTTTCAAGAATGGTCGTGTTGAAATTATTGCTAATGATCAGGGCAATCGAA 144043 Query 349293 CAACGCCATCATACGTTGCATTTACC---GAAACTGAGCGTATGATTGGTGATTCTGCAA 349349 || || || || || || ||||| ||| |||||| |||| || || | || | Sbjct 144042 TCACCCCGTCGTATGTAGCTTTTACGCCGGAAGGGGAGCGTCTGATCGGCGACGCCGCGA 143983 Query 349350 AAAATCAAGCTG-CTGCTAATCCAAAAAATACGGTTTTTGATGCTAAGCGACTTATTGGT 349408 ||||||| | || | | ||||| | |||||||| || ||||| ||||| | | ||| Sbjct 143982 AAAATCA-GTTGACCACCAATCCTGAGAATACGGTATTCGATGCAAAGCGTATGGTCGGT 143924 Query 349409 AGAAGTTTTTCTGACAAATCTACACAATCTGATCTAAAACATTTTCCTTTTACTGTTGTT 349468 || | || || || | ||| | |||| ||| | || ||| | || ||| Sbjct 143923 CGAGAATGGTCGGATAAGAGTCTTCAAGCGGATCGTAAAATGTGGCCATTTGCGGTGGTT 143864 Query 349469 CCAAAAGACGGTGATAAACCAATTATTGAGGTTGAATATAAAGGTGAACAAAAACAATTT 349528 |||| | ||||| | || || || ||| |||||| | ||| || Sbjct 143863 GAAAAATCGAGC---AAACCGAACGTTCAGCTTACTGTTAACGGTGAAAAGAAATTGTTC 143807 Query 349529 TTACCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATAT 349588 ||||||||||||||| | |||||||| | |||||||| |||||||| || || ||| Sbjct 143806 ACTCCCGAAGAAATTTCAGCGATGGTTTTGTTGAAAATGAAAGAAATTGCCGAGGCTTAT 143747 Query 349589 TTAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAG 349648 || || || ||| | |||| || | || || ||||| ||||| || ||||| || Sbjct 143746 TTGGGCAAAGAAGTGAAAAATGCCGTCGTCACGGTTCCAGCTTATTTCAACGATGCACAA 143687 Query 349649 CGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAAT 349708 ||| || || |||||||| |||| |||||| || | |||||| | |||| || || Sbjct 143686 CGTCAAGCTACCAAAGATGCAGGCACCATTGCTGGTCTTAATGTTGTTCGAATCATCAAC 143627 Query 349709 GAACC 349713 ||||| Sbjct 143626 GAACC 143622 >seq326 Length=30629 Score = 147 bits (162), Expect = 7e-30 Identities = 117/141 (83%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || |||||||||||||| || ||||||||||||||||| |||||||| || Sbjct 18523 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 18582 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 |||||||| || || | |||||||||||| ||||| | ||| | || || ||||| || Sbjct 18583 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAATGTGATGGTTTTGCCGGTGAGA 18642 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || |||||||| |||||| Sbjct 18643 GTCTTAACAAAAATTTGCATT 18663 Score = 138 bits (152), Expect = 3e-27 Identities = 115/141 (82%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || |||||||||||||| || ||||||||||||||||| |||||||| || Sbjct 17678 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 17737 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 |||||||| || || | |||||||||||| ||||| | || | || || ||||| || Sbjct 17738 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 17797 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || || ||||| |||||| Sbjct 17798 GTCTTAACGAAAATTTGCATT 17818 Score = 138 bits (152), Expect = 3e-27 Identities = 117/144 (81%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || |||||||| || |||||||| ||||| || |||||||| |||||||||||||||||| Sbjct 19766 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 19825 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 | || ||||| ||||| | ||||| ||||| ||||| || |||| || || || || Sbjct 19826 CCCTTCACATTTTCAATTGTGTCAGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 19885 Query 140715 AGTGTTTTTACAAAAATCTGCATT 140738 || ||||| ||||| ||||||||| Sbjct 19886 AGAGTTTTCACAAATATCTGCATT 19909 Score = 134 bits (148), Expect = 4e-26 Identities = 116/144 (81%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || |||||||| || | |||||| ||||| || ||||||||||| |||||||| ||||| Sbjct 18237 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTC 18296 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 |||||||||| || || | |||||||||||| ||||| | || | || || ||||| Sbjct 18297 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTA 18356 Query 140715 AGTGTTTTTACAAAAATCTGCATT 140738 || || || ||||||||||||||| Sbjct 18357 AGAGTCTTAACAAAAATCTGCATT 18380 Score = 129 bits (142), Expect = 2e-24 Identities = 113/141 (80%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || | |||||| ||||| || ||||||||||| |||||||| ||||| || Sbjct 17958 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 18017 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| ||||| | |||||||||||| ||||| | || | ||| ||||| || || Sbjct 18018 TTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCAGTAAGG 18077 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || || ||||| |||||| Sbjct 18078 GTCTTAACGAAAATTTGCATT 18098 Score = 129 bits (142), Expect = 2e-24 Identities = 113/141 (80%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || | |||||| ||||| || ||||||||||| |||||||| ||||| || Sbjct 18803 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 18862 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| ||||| | |||||||||||| ||||| | || | ||| ||||| || || Sbjct 18863 TTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCAGTAAGG 18922 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || || ||||| |||||| Sbjct 18923 GTCTTAACGAAAATTTGCATT 18943 Score = 120 bits (132), Expect = 9e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || | ||| || ||||| ||||||||||| || ||||| ||||| || || Sbjct 17395 CCAGCAAAAATCAAACGCTGTTGATCTGGAGGAATTCCCTCCTTATCTTGAATCTTCCCT 17454 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| |||| | |||||||||||| ||||| | || | || || || ||||| Sbjct 17455 TTCACATTCTCAACAGTATCAGATGGTTCCACTTCCAACGTGATGGTTTTCCCAGTTAGG 17514 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || ||||||||||||||| Sbjct 17515 GTCTTAACAAAAATCTGCATT 17535 Score = 118 bits (130), Expect = 3e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || || || || ||||| || || || |||||||| || ||||| || | Sbjct 19437 CCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCTTGCTT 19496 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 |||||||| ||||| | ||| || || |||||||||||||||| || ||||| || | Sbjct 19497 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 19556 Query 140718 GTTTTTACAAAAATCTGCAT 140737 ||||| ||||| |||||||| Sbjct 19557 GTTTTCACAAATATCTGCAT 19576 >seq2524 Length=468 Score = 141 bits (156), Expect = 3e-28 Identities = 116/141 (82%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || |||||||||||||| || ||||||||||||||||| |||||||| || Sbjct 233 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 292 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 |||||||| || || | |||||||||||| ||||| | || | || || ||||| || Sbjct 293 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 352 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || |||||||| |||||| Sbjct 353 GTCTTAACAAAAATTTGCATT 373 >seq1863 Length=625 Score = 141 bits (156), Expect = 3e-28 Identities = 116/141 (82%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || |||||||||||||| || ||||||||||||||||| |||||||| || Sbjct 429 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 370 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 |||||||| || || | |||||||||||| ||||| | || | || || ||||| || Sbjct 369 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 310 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || |||||||| |||||| Sbjct 309 GTCTTAACAAAAATTTGCATT 289 Score = 138 bits (152), Expect = 3e-27 Identities = 115/141 (82%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || |||||||||||||| || ||||||||||||||||| |||||||| || Sbjct 146 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 87 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 |||||||| || || | ||||||||| || ||||| | || | || || ||||| || Sbjct 86 TTTACATTTTCTATTGTATCAGATGGCTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 27 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || |||||||| |||||| Sbjct 26 GTCTTAACAAAAATTTGCATT 6 >seq332 Length=28044 Score = 141 bits (156), Expect = 3e-28 Identities = 116/141 (82%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || |||||||||||||| || ||||||||||||||||| |||||||| || Sbjct 197 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 256 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 |||||||| || || | |||||||||||| ||||| | || | || || ||||| || Sbjct 257 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 316 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || |||||||| |||||| Sbjct 317 GTCTTAACAAAAATTTGCATT 337 Score = 141 bits (156), Expect = 3e-28 Identities = 116/141 (82%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || |||||||||||||| || ||||||||||||||||| |||||||| || Sbjct 480 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 539 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 |||||||| || || | |||||||||||| ||||| | || | || || ||||| || Sbjct 540 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 599 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || |||||||| |||||| Sbjct 600 GTCTTAACAAAAATTTGCATT 620 Score = 134 bits (148), Expect = 4e-26 Identities = 116/144 (81%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || |||||||| || |||||||| ||||| || |||||||| |||||||||||||||||| Sbjct 1443 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 1502 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 | || ||||| |||| | || || ||||| ||||| || |||| || || ||||| Sbjct 1503 CCCTTCACATTTTCAACTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCGGTC 1562 Query 140715 AGTGTTTTTACAAAAATCTGCATT 140738 || ||||| ||||| ||||||||| Sbjct 1563 AGAGTTTTGACAAATATCTGCATT 1586 Score = 134 bits (148), Expect = 4e-26 Identities = 116/144 (81%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || |||||||| || |||||||| ||||| || |||||||| |||||||||||||||||| Sbjct 17800 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 17859 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 | || ||||| |||| | || || ||||| ||||| || |||| || || ||||| Sbjct 17860 CCCTTCACATTTTCAACTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCGGTC 17919 Query 140715 AGTGTTTTTACAAAAATCTGCATT 140738 || ||||| ||||| ||||||||| Sbjct 17920 AGAGTTTTGACAAATATCTGCATT 17943 Score = 134 bits (148), Expect = 4e-26 Identities = 116/144 (81%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || |||||||| || | |||||||||||| || ||||||||||| |||||||| ||||| Sbjct 26654 TTACCAGCAAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTC 26713 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 |||||||||| || || | |||||||||||| ||||| | || | || || ||||| Sbjct 26714 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTA 26773 Query 140715 AGTGTTTTTACAAAAATCTGCATT 140738 || || || |||||||| |||||| Sbjct 26774 AGAGTCTTAACAAAAATTTGCATT 26797 Score = 132 bits (146), Expect = 1e-25 Identities = 114/141 (81%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || |||||||||||||| || ||||||||||| |||||||| ||||| || Sbjct 26940 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 26999 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 |||||||| || || | |||||||||||| ||||| | || | || || ||||| || Sbjct 27000 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 27059 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || || ||||| |||||| Sbjct 27060 GTCTTAACGAAAATTTGCATT 27080 Score = 131 bits (144), Expect = 5e-25 Identities = 117/147 (80%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 140592 TGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATT 140651 || || |||||||| || | |||||| ||||| || ||||||||||| |||||||| ||| Sbjct 27493 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATT 27552 Query 140652 TTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCG 140711 || |||||||||| || || | |||||||||||| ||||| | || | || || ||| Sbjct 27553 TTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCG 27612 Query 140712 GTTAGTGTTTTTACAAAAATCTGCATT 140738 || || || || |||||||| |||||| Sbjct 27613 GTAAGAGTCTTAACAAAAATTTGCATT 27639 Score = 129 bits (142), Expect = 2e-24 Identities = 113/141 (80%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || | |||||||||||| || |||||||| ||||||||||| ||||| || Sbjct 26375 CCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 26434 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 |||||||| || || | |||||||||||| ||||| | || | || || ||||| || Sbjct 26435 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 26494 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || || ||||| |||||| Sbjct 26495 GTCTTAACGAAAATTTGCATT 26515 Score = 125 bits (138), Expect = 2e-23 Identities = 114/144 (79%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || |||||||| || | ||| || ||||| || ||||||||||| |||||||| ||||| Sbjct 27217 TTACCAGCAAAAATCAAACGCTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTC 27276 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 |||||||||| || || | |||||||||||| ||||| | || | || || ||||| Sbjct 27277 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTA 27336 Query 140715 AGTGTTTTTACAAAAATCTGCATT 140738 || || || |||||||| |||||| Sbjct 27337 AGAGTCTTAACAAAAATTTGCATT 27360 Score = 122 bits (134), Expect = 3e-22 Identities = 115/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 140592 TGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATT 140651 || || |||||||| || | |||||| ||||| ||||||||||| |||||||| || ||| Sbjct 27772 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGTATT 27831 Query 140652 TTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCG 140711 || |||| ||||| || || | |||||||||||| ||||| | || | || || || Sbjct 27832 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAACGTGATGGTTTTCCCA 27891 Query 140712 GTTAGTGTTTTTACAAAAATCTGCATT 140738 || || || || |||||||| |||||| Sbjct 27892 GTAAGAGTCTTAACAAAAATTTGCATT 27918 Score = 118 bits (130), Expect = 3e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || || || || ||||| || || || |||||||| || ||||| || | Sbjct 1114 CCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCTTGCTT 1173 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 |||||||| ||||| | ||| || || |||||||||||||||| || ||||| || | Sbjct 1174 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 1233 Query 140718 GTTTTTACAAAAATCTGCAT 140737 ||||| ||||| |||||||| Sbjct 1234 GTTTTCACAAATATCTGCAT 1253 >seq5215 Length=241 Score = 120 bits (132), Expect = 9e-22 Identities = 113/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || |||||||| || | |||||| ||||| ||||||||||| |||||||| || ||||| Sbjct 93 TTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGTATTTTT 152 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 |||| ||||| || || | ||||||||| || ||||| | || | || || ||||| Sbjct 153 CCTTTCACATTTTCTATTGTATCAGATGGCTCTACTTCCAAGGTGATCGTTTTGCCGGTA 212 Query 140715 AGTGTTTTTACAAAAATCTGCATT 140738 || || || |||||||| |||||| Sbjct 213 AGAGTCTTAACAAAAATTTGCATT 236 >seq6 Length=459386 Score = 98.7 bits (108), Expect = 3e-15 Identities = 75/89 (84%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 140548 CTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGA 140607 |||| |||||||| ||||| || || || || ||||||||||| |||||||||||||| | Sbjct 122589 CTTTCTGAATATTGTAATCGGACAAAGTACGTCCATCTTCAAGCTGTTTTCCAGCAAAAA 122530 Query 140608 TTAGACGTTGCTGATCAGGAGGAATTCCT 140636 | || || ||||||||||| ||||| ||| Sbjct 122529 TCAGTCGCTGCTGATCAGGTGGAATCCCT 122501 Score = 89.7 bits (98), Expect = 2e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 140634 CCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCA 140693 ||||| || |||||||||||||| || ||||| | ||| | |||||| || || ||||| Sbjct 122454 CCTTCCTTGTCCTGAATTTTAGCCTTCACATTCTGAATTGTATCAGAAGGCTCCACTTCC 122395 Query 140694 AGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || | |||||||| ||||| ||||| ||||| || ||||| Sbjct 122394 AAAGTGATGGTCTTTCCTGTTAGGGTTTTCACAAATATTTGCAT 122351 >seq127 Length=116374 Score = 89.7 bits (98), Expect = 2e-12 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 266973 ATCGGCGATAAATTTTCTAGTCGCCACGGACAAAAAGGTACCATTGGTACGATTATTCCT 267032 || || || |||||| | ||||| ||||| || || || |||||||| | ||| || | Sbjct 19410 ATTGGTGACAAATTTGCCAGTCGTCACGGTCAGAAGGGCACCATTGGGATGATATATCGT 19469 Query 267033 GAAGAAAATATGCCATTTAATGAAGATGGAATTAGACCTGATATTATTATTAATCCTCAT 267092 |||| | |||||||| | || || || | || || ||||| || ||||| || Sbjct 19470 CAAGAGGACATGCCATTCACGTGCGAAGGCATCACGCCGGACATTATAATCAATCCACAC 19529 Query 267093 GCTATTCCTAGTCGTATGACAATTGGTCAATT 267124 || ||||||||||| ||||| |||||||| || Sbjct 19530 GCAATTCCTAGTCGAATGACCATTGGTCATTT 19561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515138866113653