Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24] 5,951 sequences; 50,853,738 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq5215 118 1e-21 seq1863 118 1e-21 seq332 118 1e-21 seq326 118 1e-21 seq2524 109 6e-19 seq263 107 2e-18 seq117 93.3 5e-14 seq6 82.4 9e-11 >seq5215 Length=241 Score = 118 bits (130), Expect = 1e-21 Identities = 115/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| ||||| ||||||||||| || || || | || || ||| || Sbjct 236 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAGCCATC 177 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| || | |||| |||| | ||||| || || || |||||||||||||| || || Sbjct 176 TGATACAATAGAAAATGTGAAAGGAAAAATACAAGATAAAGAGGGAATTCCTCCGGATCA 117 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 || ||| | ||||||||||||||| || Sbjct 116 ACAACGTTTGATTTTTGCTGGTAAGTAA 89 >seq1863 Length=625 Score = 118 bits (130), Expect = 1e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| ||||| ||||||||||| || || || | || || ||| || Sbjct 6 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAGCCATC 65 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| || | |||| | || | |||||||| || || || |||||||| ||||| || Sbjct 66 TGATACAATAGAAAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCA 125 Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547 ||| ||||| ||||||||||||| Sbjct 126 GCAACGTCTGATTTTTGCTGGTA 148 Score = 109 bits (120), Expect = 6e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| ||||| ||||||||||| || || || | || || || || Sbjct 289 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATC 348 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| || | ||| | || | |||||||| || || || |||||||| ||||| || Sbjct 349 TGATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCA 408 Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547 ||| ||||| ||||||||||||| Sbjct 409 GCAACGTCTGATTTTTGCTGGTA 431 >seq332 Length=28044 Score = 118 bits (130), Expect = 1e-21 Identities = 115/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || |||||||| || || ||||| || || |||||||| || || || | Sbjct 1586 AATGCAGATATTTGTCAAAACTCTGACCGGGAAAACCATTACTCTGGAAGTGGAACCCTC 1527 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| |||| |||||| |||||||||||| || ||||||||||| || || || Sbjct 1526 AGACACAGTTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCA 1467 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 || ||||| ||||||||||||||| || Sbjct 1466 ACAACGTCTGATTTTTGCTGGTAAGTAA 1439 Score = 118 bits (130), Expect = 1e-21 Identities = 115/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || |||||||| || || ||||| || || |||||||| || || || | Sbjct 17943 AATGCAGATATTTGTCAAAACTCTGACCGGGAAAACCATTACTCTGGAAGTGGAACCCTC 17884 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| |||| |||||| |||||||||||| || ||||||||||| || || || Sbjct 17883 AGACACAGTTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCA 17824 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 || ||||| ||||||||||||||| || Sbjct 17823 ACAACGTCTGATTTTTGCTGGTAAGTAA 17796 Score = 109 bits (120), Expect = 6e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| ||||| ||||||||||| || || || | || || || || Sbjct 337 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATC 278 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| || | ||| | || | |||||||| || || || |||||||| ||||| || Sbjct 277 TGATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCA 218 Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547 ||| ||||| ||||||||||||| Sbjct 217 GCAACGTCTGATTTTTGCTGGTA 195 Score = 109 bits (120), Expect = 6e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| ||||| ||||||||||| || || || | || || || || Sbjct 620 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATC 561 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| || | ||| | || | |||||||| || || || |||||||| ||||| || Sbjct 560 TGATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCA 501 Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547 ||| ||||| ||||||||||||| Sbjct 500 GCAACGTCTGATTTTTGCTGGTA 478 Score = 109 bits (120), Expect = 6e-19 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| ||||| ||||||||||| || || || | || || || || Sbjct 26797 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATC 26738 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| || | ||| | || | ||||| ||||| ||||| |||||||| || || || Sbjct 26737 TGATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCA 26678 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 ||| ||| | ||||||||||||||| || Sbjct 26677 GCAACGTTTGATTTTTGCTGGTAAGTAA 26650 Score = 109 bits (120), Expect = 6e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || ||||| ||||||||||| || || || | || || || || Sbjct 27080 AATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATC 27021 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| || | ||| | || | ||||| ||||| ||||| |||||||| ||||| || Sbjct 27020 TGATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCAGATCA 26961 Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547 ||| ||||| ||||||||||||| Sbjct 26960 GCAACGTCTGATTTTTGCTGGTA 26938 Score = 109 bits (120), Expect = 6e-19 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| ||||| ||||||||||| || || || | || || || || Sbjct 27360 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATC 27301 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| || | ||| | || | ||||| ||||| ||||| |||||||| || || || Sbjct 27300 TGATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCA 27241 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 |||||| | ||||||||||||||| || Sbjct 27240 ACAGCGTTTGATTTTTGCTGGTAAGTAA 27213 Score = 107 bits (118), Expect = 2e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| ||||| ||||||||||| || || || | || || || || Sbjct 27639 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATC 27580 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| || | ||| | || | ||||| ||||| ||||| |||||||| || || || Sbjct 27579 TGATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCA 27520 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCA 27551 || ||| | ||||||||||||||||| Sbjct 27519 ACAACGTTTGATTTTTGCTGGTAAGCA 27493 Score = 107 bits (118), Expect = 2e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| ||||| ||||| || || || || || | || || || || Sbjct 27918 AATGCAAATTTTTGTTAAGACTCTTACTGGGAAAACCATCACGTTGGAAGTAGAACCATC 27859 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| || | |||| |||| | ||||| || || || |||||||||||||| || || Sbjct 27858 TGATACAATAGAAAATGTGAAAGGAAAAATACAAGATAAAGAGGGAATTCCTCCGGATCA 27799 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCA 27551 || ||| | ||||||||||||||||| Sbjct 27798 ACAACGTTTGATTTTTGCTGGTAAGCA 27772 Score = 105 bits (116), Expect = 8e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || ||||| ||||||||||| || || || | || || || || Sbjct 26515 AATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATC 26456 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| || | ||| | || | ||||| ||||| || ||||||||||| ||||| || Sbjct 26455 TGATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAAGAGGGAATTCCACCAGATCA 26396 Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547 ||| ||| | ||||||||||||| Sbjct 26395 GCAACGTTTGATTTTTGCTGGTA 26373 Score = 91.5 bits (100), Expect = 2e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| || ||| | || || || || ||||| ||||| |||||| | Sbjct 1253 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 1194 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| |||| | || || ||||| ||||| || || || || ||||| || Sbjct 1193 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCAGATCAA 1134 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGC 27550 ||||| || ||||||||||||| || Sbjct 1133 CAGCGGCTTATTTTTGCTGGTATGC 1109 >seq326 Length=30629 Score = 118 bits (130), Expect = 1e-21 Identities = 115/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || ||||| || || || || || || || |||||||| || || || | Sbjct 19909 AATGCAGATATTTGTGAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAACCCTC 19850 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | |||| |||| |||||| |||||||||||| || ||||||||||| || || || Sbjct 19849 TGACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCA 19790 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 || ||||| ||||||||||||||| || Sbjct 19789 ACAACGTCTGATTTTTGCTGGTAAGTAA 19762 Score = 107 bits (118), Expect = 2e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || ||||| ||||| || || || || ||| | || || || || Sbjct 18098 AATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 18039 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| |||| |||| |||| | ||||| ||||| ||||| |||||||| || || || Sbjct 18038 TGATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCA 17979 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCA 27551 || ||| | |||||||||||| |||| Sbjct 17978 ACAACGTTTGATTTTTGCTGGTGAGCA 17952 Score = 107 bits (118), Expect = 2e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || ||||| ||||| || || || || ||| | || || || || Sbjct 18943 AATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 18884 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| |||| |||| |||| | ||||| ||||| ||||| |||||||| || || || Sbjct 18883 TGATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCA 18824 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCA 27551 || ||| | |||||||||||| |||| Sbjct 18823 ACAACGTTTGATTTTTGCTGGTGAGCA 18797 Score = 105 bits (116), Expect = 8e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || ||||| ||||||||||| || || || | || || || || Sbjct 17818 AATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATC 17759 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| || | ||| | || | |||||||| || || || |||||||| ||||| || Sbjct 17758 TGATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCA 17699 Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547 ||| ||||| ||||||||||||| Sbjct 17698 GCAACGTCTGATTTTTGCTGGTA 17676 Score = 105 bits (116), Expect = 8e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| ||||| || |||||||| || || || | || || || || Sbjct 18663 AATGCAAATTTTTGTTAAGACTCTCACCGGCAAAACCATCACATTGGAAGTAGAACCATC 18604 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| || | ||| | || | |||||||| || || || |||||||| ||||| || Sbjct 18603 TGATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCA 18544 Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547 ||| ||||| ||||||||||||| Sbjct 18543 GCAACGTCTGATTTTTGCTGGTA 18521 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || ||||| ||||| || || || || || || || | || || || || Sbjct 17535 AATGCAGATTTTTGTTAAGACCCTAACTGGGAAAACCATCACGTTGGAAGTGGAACCATC 17476 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| ||| ||| |||| | || ||||| || |||||||||||||||||||| || Sbjct 17475 TGATACTGTTGAGAATGTGAAAGGGAAGATTCAAGATAAGGAGGGAATTCCTCCAGATCA 17416 Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547 |||||| | ||||||||||||| Sbjct 17415 ACAGCGTTTGATTTTTGCTGGTA 17393 Score = 100 bits (110), Expect = 3e-16 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || ||||| ||||| ||||||||||| || || || | || || || || Sbjct 18380 AATGCAGATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATC 18321 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| || | ||| | || | ||||| ||||| ||||| |||||||| || || || Sbjct 18320 TGATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCA 18261 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 || ||| | ||||||||||||||| || Sbjct 18260 ACAACGTTTGATTTTTGCTGGTAAGTAA 18233 Score = 91.5 bits (100), Expect = 2e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| || ||| | || || || || ||||| ||||| |||||| | Sbjct 19576 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 19517 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| |||| | || || ||||| ||||| || || || || ||||| || Sbjct 19516 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCAGATCAA 19457 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGC 27550 ||||| || ||||||||||||| || Sbjct 19456 CAGCGGCTTATTTTTGCTGGTATGC 19432 >seq2524 Length=468 Score = 109 bits (120), Expect = 6e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| ||||| ||||||||||| || || || | || || || || Sbjct 373 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATC 314 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| || | ||| | || | |||||||| || || || |||||||| ||||| || Sbjct 313 TGATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCA 254 Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547 ||| ||||| ||||||||||||| Sbjct 253 GCAACGTCTGATTTTTGCTGGTA 231 >seq263 Length=55217 Score = 107 bits (118), Expect = 2e-18 Identities = 185/268 (69%), Gaps = 3/268 (1%) Strand=Plus/Plus Query 64582 CTCATGATTGACAAGTTTGTTCGGGATCCTGTCGAGAAGGATGGACTGTTCAGGGCTATA 64641 ||| |||| |||| | | || ||||| || ||| ||| ||||||| || || Sbjct 23528 CTCTTGATCGACACCTACATCCGTGATCCGGTGGAGCGTGATTTTCTGTTCAACGCGATC 23587 Query 64642 GAGACTGTACCCGCTGTTACTAAAAAGGCTGAATGGGCCATCCGGTGGATGAAT---CGT 64698 ||||| | || || | ||||| || || ||||| | || ||||| | ||| Sbjct 23588 GAGACCATTCCGTGCGTGAAGAAAAAAGCAGACTGGGCTTTGCGCTGGATCGGTGACCGT 23647 Query 64699 GGGTCGTCGTTTGGTCAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCT 64758 |||| | ||| | | ||| | | || || || ||| ||||| ||||||||||| Sbjct 23648 CAGTCGCCATTTTGCGAACGTTTGGTCGCGTTCGCAGCTGTTGAAGGCATTTTCTTTTCC 23707 Query 64759 GGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTT 64818 || ||| || ||||||||| | |||||||| ||||||||||| ||| || |||| Sbjct 23708 GGCAGCTTCGCGTCAATTTTCTGGTTGAAAAAGCGCGGCCTGATGCCCGGTTTGACGTTC 23767 Query 64819 TCGAACGAGCTGATCTCTCGGGACGAGG 64846 ||||||||||||||||| ||||||| Sbjct 23768 AGCAACGAGCTGATCTCTCGTGACGAGG 23795 >seq117 Length=123509 Score = 93.3 bits (102), Expect = 5e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| || || || ||||| ||||| || || ||||| || || || ||||| || Sbjct 10414 ATTATGCAGATATTCGTGAAGACACTTACTGGAAAAACTATAACACTAGAAGTTGAACCA 10355 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | ||| | |||| | || |||||||||||| ||||| || |||||||| || Sbjct 10354 TCAGACACCATCGAAAATGTTAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTCCTGAT 10295 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAA 27548 ||||| | |||| ||||| ||||| Sbjct 10294 CAGCAAAGATTAATCTTTGCAGGTAA 10269 >seq6 Length=459386 Score = 82.4 bits (90), Expect = 9e-11 Identities = 89/117 (76%), Gaps = 1/117 (1%) Strand=Plus/Plus Query 27394 AATATTACTATA-ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGA 27452 |||||| | || |||||||| ||||| || || || || || ||||| || ||| | || Sbjct 122338 AATATTTATTTAGATGCAAATATTTGTGAAAACCCTAACAGGAAAGACCATCACTTTGGA 122397 Query 27453 GGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || ||| | ||||| ||| ||| ||||||||||||||||||||||||| || Sbjct 122398 AGTGGAGCCTTCTGATACAATTCAGAATGTGAAGGCTAAAATTCAGGACAAGGAAGG 122454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570267976035120