Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24] 5,951 sequences; 50,853,738 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq332 91.5 1e-13 seq326 84.2 2e-11 seq117 84.2 2e-11 >seq332 Length=28044 Score = 91.5 bits (100), Expect = 1e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 27922 TTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAG 27981 ||| | || ||||| ||||| |||| ||| | ||||||||||| ||||| || |||||| Sbjct 1349 TTTTCAGGCAAACAGTTGGAAGACGGACGTACTTTGTCCGATTATAACATTCAGAAAGAG 1290 Query 27982 AGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| | || ||||||||||||||||| || || Sbjct 1289 AGCACGCTTCACTTGGTTTTGCGTTTGCGCGGTGG 1255 >seq326 Length=30629 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 27928 GGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACT 27987 || ||||| ||||| |||| ||| | ||||||||||| || || || ||||||||||| Sbjct 19666 GGCAAACAGTTGGAAGACGGACGTACTTTGTCCGATTATAATATTCAGAAAGAGAGCACG 19607 Query 27988 TTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | || ||||||||||||||||| || || Sbjct 19606 CTTCACTTGGTTTTGCGTTTGCGCGGTGG 19578 >seq117 Length=123509 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 27928 GGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACT 27987 || |||||| |||| || | || | || ||||| ||||| ||||| ||||| |||||| Sbjct 8959 GGGAAACAACTGGAAGATGGTCGTACGTTATCCGACTACAATATCCAGAAAGAAAGCACT 8900 Query 27988 TTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||| ||||||| |||||||| Sbjct 8899 TTGCATTTGGTGCTGCGTTTACGTGGCGG 8871 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 27928 GGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACT 27987 || |||||| |||| || | || | || ||||| ||||| ||||| ||||| |||||| Sbjct 9246 GGGAAACAACTGGAAGATGGTCGTACGTTATCCGACTACAATATCCAGAAAGAAAGCACT 9187 Query 27988 TTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||| ||||||| |||||||| Sbjct 9186 TTGCATTTGGTGCTGCGTTTACGTGGCGG 9158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355836590078577