Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24]
5,951 sequences; 50,853,738 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq263 118 9e-22
>seq263
Length=55217
Score = 118 bits (130), Expect = 9e-22
Identities = 238/349 (68%), Gaps = 12/349 (3%)
Strand=Plus/Minus
Query 4584 ATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATA 4643
||||| ||||| ||||| || |||||||| | || | |||||| | ||| || ||
Sbjct 23781 ATCAGCTCGTTGCTGAACGTCAAACCGGGCATCAGGCCGCGCTTTTTCAACCAGAAAATT 23722
Query 4644 GCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGAC 4703
| || || || |||||||| |||||||| || || || ||||| || || ||
Sbjct 23721 GACGCGAAGCTGCCGGAAAAGAAAATGCCTTCAACAGCTGCGAACGCGACCAAACGTTCG 23662
Query 4704 CCGAA---CGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTA 4760
| || ||| ||| | ||| ||||| || ||||||| |||||||||||
Sbjct 23661 CAAAATGGCGA-CTGACG--GTCACCGATCCAGCGCAAAGCCCAGTCTGCTTTTTTCTTC 23605
Query 4761 ACGCACGGAATTGTGTATATAGCGTTAAA---TAATTTACTTTTTTCAAATGGGTCTTGA 4817
||||||||||| || | || ||||| || || | || || | || || |
Sbjct 23604 ACGCACGGAATGGTCTCGATCGCGTTGAACAGAAAATCAC---GCTCCACCGGATCACGG 23548
Query 4818 ATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGA 4877
|| || ||||| || | ||||| |||||||| ||||| | ||||||||| ||||| ||
Sbjct 23547 ATGTAGGTGTCGATCAAGAGGCTGTACATTTCGGAATGGACATTTTCTATGGCAATTTGG 23488
Query 4878 AATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926
|| || || || | | || || |||||||||| ||| | ||||||
Sbjct 23487 AAGCCATAGAAAAAACGTGCCTCGGTTACTTGAATTTCTTGCGAAAATC 23439
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427018627026683
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |