Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24] 5,951 sequences; 50,853,738 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq146 141 1e-28 >seq146 Length=107015 Score = 141 bits (156), Expect = 1e-28 Identities = 147/193 (76%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 76802 TGCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAA 76861 ||| || || || | | ||||||||| |||||||| |||||| |||| |||||||| Sbjct 12363 TGCCGGCTTGGTTCTCAAATAGTACATCCCAGTTTTCAGACCCTTCTTCCAGCCGTAGAA 12304 Query 76862 ATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACT 76921 |||||| ||||| ||| | |||| | || |||||||| |||||||||| |||||| Sbjct 12303 ATGCATTGATGTCAATTTAGCATAATTCGGCTCGGCTATGTGAATATTCAACGACTGGGA 12244 Query 76922 TTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTC 76981 ||| || ||||| ||||| || ||||| ||||| | ||| | | ||||| | |||||| Sbjct 12243 TTGGTCAATGAATGCTCCCCTTTCAGCGGCCATGTCTATGACGCATTTTTGGGAAATTTC 12184 Query 76982 CCAAATAGTTTTG 76994 ||||| || ||| Sbjct 12183 CCAAACCGTCTTG 12171 Score = 134 bits (148), Expect = 2e-26 Identities = 154/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 77924 TTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGA 77983 |||||| ||||| ||||| | ||| |||||||||| ||||||| |||||||||| ||| Sbjct 10893 TTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCATGAGGGCACATCAGTGA 10834 Query 77984 CCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 78043 ||| || || || | | || || ||||| || |||||||||||||| || ||| ||| Sbjct 10833 CCAATCTCCGTCGGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAGAGGGCATAAAA 10774 Query 78044 TAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCAT 78103 | |||||||| || | |||||| ||||| |||||||| || ||||| || | Sbjct 10773 CAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAGAAAATCAAA 10714 Query 78104 AATATCAGAATGCCATGGTTCTAGATA 78130 || || | ||||| ||||| | ||| Sbjct 10713 TATGTCTGCGTGCCAAGGTTCCAAATA 10687 Score = 114 bits (126), Expect = 2e-20 Identities = 186/261 (71%), Gaps = 10/261 (4%) Strand=Plus/Minus Query 77284 ATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGT 77343 ||| ||||||||| | ||| | ||| ||||| ||| | || ||||| ||||| || | Sbjct 11737 ATTCCCAATCCCACAAATCCGTAGGCTGAACATTCCACATGTCATATTGAAGAATACCCT 11678 Query 77344 TACTAGCATATGATCCATTATATGTTTCATAAGGTCCTT-CTGTTTCAGCTAGTTCACAA 77402 ||||||| ||| || | ||| || || || || || |||||| || | || ||| Sbjct 11677 TACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCAAACTGTTTT-GCCAAATCGCAA 11619 Query 77403 CTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAG--ATCTTG-T 77459 || ||| || || | ||||| || ||||| ||||| |||||||| | |||| | | Sbjct 11618 CTGCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTTATTCAACAATCTAGCT 11559 Query 77460 GCTTCA-ATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAAC 77518 |||| || ||||||||||| | | | |||||| ||||| || ||||| || || Sbjct 11558 TCTTCGGAT----TCAAACGGATATCGCATCAAAATAAAAGCATCCGCCAATCCTTGTAC 11503 Query 77519 TCCAATACCAATAGGTCTATG 77539 ||||||||||| |||| ||| Sbjct 11502 ACCAATACCAATTGGTCGATG 11482 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 77123 TATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCAC 77182 || |||||||||||| || | || | |||||| || | ||| || || | ||| || Sbjct 11970 TACTTGAAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTACGCTTCTAC 11911 Query 77183 AGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAA 77242 ||||||||||| ||||||||||| || || || ||||| ||||| || |||| ||| || Sbjct 11910 TGATTCATTGTTGCCCAAAATTTGCGCTGTCGATGCAGTCGGCATTGGAGCCAACAACAA 11851 Query 77243 ACTATTTCTGAGACCAT 77259 |||||| ||||||| Sbjct 11850 CGAATTTCTCAGACCAT 11834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694617125324640