Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24]
5,951 sequences; 50,853,738 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq146 141 1e-28
>seq146
Length=107015
Score = 141 bits (156), Expect = 1e-28
Identities = 147/193 (76%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 76802 TGCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAA 76861
||| || || || | | ||||||||| |||||||| |||||| |||| ||||||||
Sbjct 12363 TGCCGGCTTGGTTCTCAAATAGTACATCCCAGTTTTCAGACCCTTCTTCCAGCCGTAGAA 12304
Query 76862 ATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACT 76921
|||||| ||||| ||| | |||| | || |||||||| |||||||||| ||||||
Sbjct 12303 ATGCATTGATGTCAATTTAGCATAATTCGGCTCGGCTATGTGAATATTCAACGACTGGGA 12244
Query 76922 TTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTC 76981
||| || ||||| ||||| || ||||| ||||| | ||| | | ||||| | ||||||
Sbjct 12243 TTGGTCAATGAATGCTCCCCTTTCAGCGGCCATGTCTATGACGCATTTTTGGGAAATTTC 12184
Query 76982 CCAAATAGTTTTG 76994
||||| || |||
Sbjct 12183 CCAAACCGTCTTG 12171
Score = 134 bits (148), Expect = 2e-26
Identities = 154/207 (74%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 77924 TTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGA 77983
|||||| ||||| ||||| | ||| |||||||||| ||||||| |||||||||| |||
Sbjct 10893 TTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCATGAGGGCACATCAGTGA 10834
Query 77984 CCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 78043
||| || || || | | || || ||||| || |||||||||||||| || ||| |||
Sbjct 10833 CCAATCTCCGTCGGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAGAGGGCATAAAA 10774
Query 78044 TAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCAT 78103
| |||||||| || | |||||| ||||| |||||||| || ||||| || |
Sbjct 10773 CAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAGAAAATCAAA 10714
Query 78104 AATATCAGAATGCCATGGTTCTAGATA 78130
|| || | ||||| ||||| | |||
Sbjct 10713 TATGTCTGCGTGCCAAGGTTCCAAATA 10687
Score = 114 bits (126), Expect = 2e-20
Identities = 186/261 (71%), Gaps = 10/261 (4%)
Strand=Plus/Minus
Query 77284 ATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGT 77343
||| ||||||||| | ||| | ||| ||||| ||| | || ||||| ||||| || |
Sbjct 11737 ATTCCCAATCCCACAAATCCGTAGGCTGAACATTCCACATGTCATATTGAAGAATACCCT 11678
Query 77344 TACTAGCATATGATCCATTATATGTTTCATAAGGTCCTT-CTGTTTCAGCTAGTTCACAA 77402
||||||| ||| || | ||| || || || || || |||||| || | || |||
Sbjct 11677 TACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCAAACTGTTTT-GCCAAATCGCAA 11619
Query 77403 CTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAG--ATCTTG-T 77459
|| ||| || || | ||||| || ||||| ||||| |||||||| | |||| | |
Sbjct 11618 CTGCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTTATTCAACAATCTAGCT 11559
Query 77460 GCTTCA-ATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAAC 77518
|||| || ||||||||||| | | | |||||| ||||| || ||||| || ||
Sbjct 11558 TCTTCGGAT----TCAAACGGATATCGCATCAAAATAAAAGCATCCGCCAATCCTTGTAC 11503
Query 77519 TCCAATACCAATAGGTCTATG 77539
||||||||||| |||| |||
Sbjct 11502 ACCAATACCAATTGGTCGATG 11482
Score = 98.7 bits (108), Expect = 1e-15
Identities = 104/137 (76%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 77123 TATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCAC 77182
|| |||||||||||| || | || | |||||| || | ||| || || | ||| ||
Sbjct 11970 TACTTGAAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTACGCTTCTAC 11911
Query 77183 AGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAA 77242
||||||||||| ||||||||||| || || || ||||| ||||| || |||| ||| ||
Sbjct 11910 TGATTCATTGTTGCCCAAAATTTGCGCTGTCGATGCAGTCGGCATTGGAGCCAACAACAA 11851
Query 77243 ACTATTTCTGAGACCAT 77259
|||||| |||||||
Sbjct 11850 CGAATTTCTCAGACCAT 11834
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694617125324640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |