Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24]
5,951 sequences; 50,853,738 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq326 98.7 2e-15
seq332 95.1 3e-14
seq5215 93.3 9e-14
seq117 86.0 1e-11
seq123 84.2 5e-11
>seq326
Length=30629
Score = 98.7 bits (108), Expect = 2e-15
Identities = 108/144 (75%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016
|| || ||||| |||||||||||||| || ||||| || ||||| || || || ||
Sbjct 18237 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTC 18296
Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076
||||||| | || || || || || | ||| ||||| | |||||||| || || ||
Sbjct 18297 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTA 18356
Query 283077 AAAGTCTTAACGAATATCTGCATT 283100
| ||||||||| || |||||||||
Sbjct 18357 AGAGTCTTAACAAAAATCTGCATT 18380
Score = 95.1 bits (104), Expect = 3e-14
Identities = 109/147 (74%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016
|| || ||||| |||| ||||||||| || ||||| ||||| || || || || ||
Sbjct 19766 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 19825
Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076
| || || | || || ||||| || | ||| ||||| ||||| || || || || |||
Sbjct 19826 CCCTTCACATTTTCAATTGTGTCAGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 19885
Query 283077 AAAGTCTTAACGAATATCTGCATTTTC 283103
| ||| || || |||||||||||||||
Sbjct 19886 AGAGTTTTCACAAATATCTGCATTTTC 19912
Score = 87.8 bits (96), Expect = 4e-12
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019
|| ||||| |||| |||||| || || ||||| || || || ||||| || || ||
Sbjct 17678 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 17737
Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079
||||| | || || || || || | ||| ||||| | |||||||| || || || | |
Sbjct 17738 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 17797
Query 283080 GTCTTAACGAATATCTGCATT 283100
||||||||||| || ||||||
Sbjct 17798 GTCTTAACGAAAATTTGCATT 17818
Score = 84.2 bits (92), Expect = 5e-11
Identities = 103/141 (73%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019
|| ||||| |||||||||||||| || ||||| || ||||| || || || || ||
Sbjct 17958 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 18017
Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079
|| || | || || || || || | ||| ||||| | ||| || || || || || |
Sbjct 18018 TTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCAGTAAGG 18077
Query 283080 GTCTTAACGAATATCTGCATT 283100
||||||||||| || ||||||
Sbjct 18078 GTCTTAACGAAAATTTGCATT 18098
Score = 84.2 bits (92), Expect = 5e-11
Identities = 103/141 (73%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019
|| ||||| |||||||||||||| || ||||| || ||||| || || || || ||
Sbjct 18803 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 18862
Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079
|| || | || || || || || | ||| ||||| | ||| || || || || || |
Sbjct 18863 TTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCAGTAAGG 18922
Query 283080 GTCTTAACGAATATCTGCATT 283100
||||||||||| || ||||||
Sbjct 18923 GTCTTAACGAAAATTTGCATT 18943
>seq332
Length=28044
Score = 95.1 bits (104), Expect = 3e-14
Identities = 109/147 (74%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 282954 TGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATC 283013
|| || || ||||| |||||||||||||| || ||||| || ||||| || || ||
Sbjct 27493 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATT 27552
Query 283014 TTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCC 283073
|| ||||||| | || || || || || | ||| ||||| | |||||||| || ||
Sbjct 27553 TTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCG 27612
Query 283074 GTCAAAGTCTTAACGAATATCTGCATT 283100
|| | ||||||||| || || ||||||
Sbjct 27613 GTAAGAGTCTTAACAAAAATTTGCATT 27639
Score = 95.1 bits (104), Expect = 3e-14
Identities = 109/147 (74%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 282954 TGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATC 283013
|| || || ||||| |||||||||||||| || ||||| ||||| || ||||| ||
Sbjct 27772 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGTATT 27831
Query 283014 TTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCC 283073
||| |||| || | || || || || || | ||| ||||| | ||||| || || ||
Sbjct 27832 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAACGTGATGGTTTTCCCA 27891
Query 283074 GTCAAAGTCTTAACGAATATCTGCATT 283100
|| | ||||||||| || || ||||||
Sbjct 27892 GTAAGAGTCTTAACAAAAATTTGCATT 27918
Score = 93.3 bits (102), Expect = 9e-14
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019
|| ||||| ||||||||||| || || ||||| ||||| || || || || || ||
Sbjct 26375 CCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 26434
Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079
||||| | || || || || || | ||| ||||| | |||||||| || || || | |
Sbjct 26435 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 26494
Query 283080 GTCTTAACGAATATCTGCATT 283100
||||||||||| || ||||||
Sbjct 26495 GTCTTAACGAAAATTTGCATT 26515
Score = 89.7 bits (98), Expect = 1e-12
Identities = 106/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016
|| || ||||| ||||||||||| || || ||||| || ||||| || || || ||
Sbjct 26654 TTACCAGCAAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTC 26713
Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076
||||||| | || || || || || | ||| ||||| | |||||||| || || ||
Sbjct 26714 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTA 26773
Query 283077 AAAGTCTTAACGAATATCTGCATT 283100
| ||||||||| || || ||||||
Sbjct 26774 AGAGTCTTAACAAAAATTTGCATT 26797
Score = 87.8 bits (96), Expect = 4e-12
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019
|| ||||| |||| |||||| || || ||||| || ||||| || || || || ||
Sbjct 26940 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 26999
Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079
||||| | || || || || || | ||| ||||| | |||||||| || || || | |
Sbjct 27000 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 27059
Query 283080 GTCTTAACGAATATCTGCATT 283100
||||||||||| || ||||||
Sbjct 27060 GTCTTAACGAAAATTTGCATT 27080
Score = 86.0 bits (94), Expect = 1e-11
Identities = 106/145 (73%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016
|| || ||||| |||| ||||||||| || ||||| ||||| || || || || ||
Sbjct 1443 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 1502
Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076
| || || | || | ||||| || | ||| ||||| ||||| || || || || |||
Sbjct 1503 CCCTTCACATTTTCAACTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCGGTC 1562
Query 283077 AAAGTCTTAACGAATATCTGCATTT 283101
| ||| || || |||||||||||||
Sbjct 1563 AGAGTTTTGACAAATATCTGCATTT 1587
Score = 86.0 bits (94), Expect = 1e-11
Identities = 106/145 (73%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016
|| || ||||| |||| ||||||||| || ||||| ||||| || || || || ||
Sbjct 17800 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 17859
Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076
| || || | || | ||||| || | ||| ||||| ||||| || || || || |||
Sbjct 17860 CCCTTCACATTTTCAACTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCGGTC 17919
Query 283077 AAAGTCTTAACGAATATCTGCATTT 283101
| ||| || || |||||||||||||
Sbjct 17920 AGAGTTTTGACAAATATCTGCATTT 17944
>seq5215
Length=241
Score = 93.3 bits (102), Expect = 9e-14
Identities = 107/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016
|| || ||||| |||||||||||||| || ||||| ||||| || ||||| || |||
Sbjct 93 TTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGTATTTTT 152
Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076
|||| || | || || || || || | || ||||| | |||||||| || || ||
Sbjct 153 CCTTTCACATTTTCTATTGTATCAGATGGCTCTACTTCCAAGGTGATCGTTTTGCCGGTA 212
Query 283077 AAAGTCTTAACGAATATCTGCATT 283100
| ||||||||| || || ||||||
Sbjct 213 AGAGTCTTAACAAAAATTTGCATT 236
>seq117
Length=123509
Score = 86.0 bits (94), Expect = 1e-11
Identities = 107/144 (74%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016
|| || |||||||| || | ||| || ||| ||||| || ||||| || || || |||
Sbjct 10269 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAAT-TTT 10327
Query 283017 GCTTTTA-CGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075
|||||| | | ||||| ||||| || | ||| ||||| || || || || || || ||
Sbjct 10328 ACTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGT 10387
Query 283076 CAAAGTCTTAACGAATATCTGCAT 283099
| ||||| ||||||||||||||
Sbjct 10388 AAGTGTCTTCACGAATATCTGCAT 10411
>seq123
Length=120441
Score = 84.2 bits (92), Expect = 5e-11
Identities = 226/338 (67%), Gaps = 12/338 (4%)
Strand=Plus/Minus
Query 273780 GTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTGA 273839
|| |||||||| || ||||| || || |||| || | || | | ||||| |||
Sbjct 82583 GTAAAAATGTATCTTGCACTGGCCGCATCTCTGCCGCCGAGAAGTCGAGTGCCAAATTGA 82524
Query 273840 CCC-TCGG--GCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTC 273896
|| |||| ||| || ||| ||||| ||||| || ||| ||| ||||||| |||
Sbjct 82523 CCAATCGGTAGCAATAT---GTTGATGTTATTGCTGCCCACGAAATTATGAGCCAAATTT 82467
Query 273897 ACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATAA 273956
| || || | | || || |||||||||||||| || ||||| || | ||
Sbjct 82466 ATAATGGTGCTCATCAGACTGACTTCGCCGTGGTGATAAGCTGAATGTTCAGCAACGGAA 82407
Query 273957 CCACTGAACTGAGCAACCTTCACATCGCTCGTCAA--GTTTCGCTTGAATGCGGAATACA 274014
||| | |||||| || ||||| | ||||| | ||| |||||||| | |||
Sbjct 82406 CCAGCAAGCTGAGCGACTTTCACTT--CTCGTTTATCGTTGCGCTTGAAACACGTGAACA 82349
Query 274015 ACACCTTCCGCTGCGAGGGCTTGAACCCATCAACGACCGATGGAATACTGCGTTCCAAAT 274074
| || || || || ||||| || |||||||| | ||| ||||| || || || ||
Sbjct 82348 AAACTTTACGTTGTCCAGGCTTCAAGCCATCAACTATCGAAGGAATGCTACGCTCGTTAT 82289
Query 274075 -CATACCGAGAGAACAAAATCAGTTCCTTGTCAATGAA 274111
||| | ||||||||||| || ||||| |||||
Sbjct 82288 CCATGTTG-CTGAACAAAATCAACTCTTTGTCGATGAA 82252
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046659389079954
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