Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24] 5,951 sequences; 50,853,738 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq4800 251 7e-62 seq2481 113 5e-20 >seq4800 Length=266 Score = 251 bits (278), Expect = 7e-62 Identities = 177/201 (88%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 8349 CTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGCCTCC 8408 |||||| |||||||||||||||||||||| ||||| ||||||||||||||| |||||| Sbjct 201 CTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCAATCTCGGCTCACTGCAACCTCTGCCTCC 142 Query 8409 CGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCC 8468 ||||||||| |||||||||||||||||||| |||||||||||||||||| ||| Sbjct 141 TGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGTGCCTGCC 82 Query 8469 ACCACGCCAAGCTAA--TTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCCA 8526 |||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||| Sbjct 81 ACCACGCCTGGCTAATTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCA 22 Query 8527 GGCTGGTCTCGAACTCCTGAC 8547 ||||||||| || |||||||| Sbjct 21 GGCTGGTCTTGATCTCCTGAC 1 >seq2481 Length=476 Score = 113 bits (124), Expect = 5e-20 Identities = 91/110 (83%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 8351 CTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGCCTCCCG 8410 ||||||| |||| ||| || || |||| |||| |||||||||||| || ||||| || Sbjct 294 CTGTTGCACAGGGTGGGGTACAATGGCGCCATCTTTGCTCACTGCAACATCTGCCTCACG 353 Query 8411 GGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGG 8460 ||| ||| |||||||||||||||||||| |||||||||||| |||||| Sbjct 354 GGTCTAAGTGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGG 403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521449207811400