Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24]
5,951 sequences; 50,853,738 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq117 102 2e-16
seq326 98.7 2e-15
seq2524 95.1 3e-14
seq1863 95.1 3e-14
seq332 95.1 3e-14
>seq117
Length=123509
Score = 102 bits (112), Expect = 2e-16
Identities = 113/151 (75%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 177913 TTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGG 177972
|| |||| | || || |||||||| || || || |||||||| || || || || || |
Sbjct 10419 TTCAAATTATGCAGATATTCGTGAAGACACTTACTGGAAAAACTATAACACTAGAAGTTG 10360
Query 177973 AAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032
|| |||||||||||||| || || ||| || |||||||| || ||||| || ||||
Sbjct 10359 AACCATCAGACACCATCGAAAATGTTAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTC 10300
Query 178033 CGGACCAGCAACGACTTATCTTCGCCGGAAA 178063
| || |||||| || | ||||| || || ||
Sbjct 10299 CTGATCAGCAAAGATTAATCTTTGCAGGTAA 10269
>seq326
Length=30629
Score = 98.7 bits (108), Expect = 2e-15
Identities = 104/137 (76%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||||||||| || ||||| || || |||||||||||| | || || ||| || ||
Sbjct 17814 CAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCTGAT 17755
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || ||||| || ||| || ||||| || ||||||||||| || || || ||||||
Sbjct 17754 ACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAGCAA 17695
Query 178044 CGACTTATCTTCGCCGG 178060
|| || || || || ||
Sbjct 17694 CGTCTGATTTTTGCTGG 17678
Score = 89.7 bits (98), Expect = 1e-12
Identities = 102/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||| || || |||||||| || ||||| ||||| | || || ||| || ||
Sbjct 18659 CAAATTTTTGTTAAGACTCTCACCGGCAAAACCATCACATTGGAAGTAGAACCATCTGAT 18600
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || ||||| || ||| || ||||| || ||||||||||| || || || ||||||
Sbjct 18599 ACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAGCAA 18540
Query 178044 CGACTTATCTTCGCCGG 178060
|| || || || || ||
Sbjct 18539 CGTCTGATTTTTGCTGG 18523
Score = 89.7 bits (98), Expect = 1e-12
Identities = 102/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || |||||||| | |||||||||||||| || || || || || |||||
Sbjct 19573 CAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCAGAT 19514
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || || ||| |||||||| ||||||||||| ||||| || || || ||
Sbjct 19513 ACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCAGATCAACAG 19454
Query 178044 CGACTTATCTTCGCCGG 178060
|| ||||| || || ||
Sbjct 19453 CGGCTTATTTTTGCTGG 19437
Score = 87.8 bits (96), Expect = 4e-12
Identities = 109/149 (73%), Gaps = 3/149 (2%)
Strand=Plus/Minus
Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974
||||||| | || || ||||||||||| || || ||||| || || || || ||||||
Sbjct 19911 AAAATGC---AGATATTTGTGAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAA 19855
Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034
||| ||||| || || || || || || |||||||| ||||| ||||| || ||
Sbjct 19854 CCCTCTGACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCC 19795
Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAA 178063
|| || ||||| || || || || || ||
Sbjct 19794 GATCAACAACGTCTGATTTTTGCTGGTAA 19766
>seq2524
Length=468
Score = 95.1 bits (104), Expect = 3e-14
Identities = 103/137 (75%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||| || || ||||| || || |||||||||||| | || || ||| || ||
Sbjct 369 CAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCTGAT 310
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || ||||| || ||| || ||||| || ||||||||||| || || || ||||||
Sbjct 309 ACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAGCAA 250
Query 178044 CGACTTATCTTCGCCGG 178060
|| || || || || ||
Sbjct 249 CGTCTGATTTTTGCTGG 233
>seq1863
Length=625
Score = 95.1 bits (104), Expect = 3e-14
Identities = 103/137 (75%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||| || || ||||| || || |||||||||||| | || || ||| || ||
Sbjct 293 CAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCTGAT 352
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || ||||| || ||| || ||||| || ||||||||||| || || || ||||||
Sbjct 353 ACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAGCAA 412
Query 178044 CGACTTATCTTCGCCGG 178060
|| || || || || ||
Sbjct 413 CGTCTGATTTTTGCTGG 429
Score = 86.0 bits (94), Expect = 2e-11
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||| || || ||||| || || |||||||||||| | || || || || ||
Sbjct 10 CAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAGCCATCTGAT 69
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || || ||| || ||||| || ||||||||||| || || || ||||||
Sbjct 70 ACAATAGAAAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAGCAA 129
Query 178044 CGACTTATCTTCGCCGG 178060
|| || || || || ||
Sbjct 130 CGTCTGATTTTTGCTGG 146
>seq332
Length=28044
Score = 95.1 bits (104), Expect = 3e-14
Identities = 103/137 (75%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||| || || ||||| || || |||||||||||| | || || ||| || ||
Sbjct 333 CAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCTGAT 274
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || ||||| || ||| || ||||| || ||||||||||| || || || ||||||
Sbjct 273 ACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAGCAA 214
Query 178044 CGACTTATCTTCGCCGG 178060
|| || || || || ||
Sbjct 213 CGTCTGATTTTTGCTGG 197
Score = 95.1 bits (104), Expect = 3e-14
Identities = 103/137 (75%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||| || || ||||| || || |||||||||||| | || || ||| || ||
Sbjct 616 CAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCTGAT 557
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || ||||| || ||| || ||||| || ||||||||||| || || || ||||||
Sbjct 556 ACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAGCAA 497
Query 178044 CGACTTATCTTCGCCGG 178060
|| || || || || ||
Sbjct 496 CGTCTGATTTTTGCTGG 480
Score = 95.1 bits (104), Expect = 3e-14
Identities = 103/137 (75%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||||||||| || ||||| || || |||||||||||| | || || ||| || ||
Sbjct 27076 CAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCTGAT 27017
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || ||||| || ||| || || ||||| || |||||||| || || || ||||||
Sbjct 27016 ACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCAGATCAGCAA 26957
Query 178044 CGACTTATCTTCGCCGG 178060
|| || || || || ||
Sbjct 26956 CGTCTGATTTTTGCTGG 26940
Score = 91.5 bits (100), Expect = 4e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||| || || ||||| || || |||||||||||| | || || ||| || ||
Sbjct 26793 CAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCTGAT 26734
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || ||||| || ||| || || ||||| || |||||||| || ||||| ||||||
Sbjct 26733 ACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAGCAA 26674
Query 178044 CGACTTATCTTCGCCGGAAA 178063
|| | || || || || ||
Sbjct 26673 CGTTTGATTTTTGCTGGTAA 26654
Score = 89.7 bits (98), Expect = 1e-12
Identities = 102/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || |||||||| | |||||||||||||| || || || || || |||||
Sbjct 1250 CAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCAGAT 1191
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || || ||| |||||||| ||||||||||| ||||| || || || ||
Sbjct 1190 ACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCAGATCAACAG 1131
Query 178044 CGACTTATCTTCGCCGG 178060
|| ||||| || || ||
Sbjct 1130 CGGCTTATTTTTGCTGG 1114
Score = 89.7 bits (98), Expect = 1e-12
Identities = 93/122 (76%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||||||||| || ||||| || || |||||||||||| | || || ||| || ||
Sbjct 26511 CAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCTGAT 26452
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || ||||| || ||| || || ||||| ||||| ||||| || || || ||||||
Sbjct 26451 ACAATAGAGAATGTAAAAGGCAAAATACAGGATAAAGAGGGAATTCCACCAGATCAGCAA 26392
Query 178044 CG 178045
||
Sbjct 26391 CG 26390
Score = 89.7 bits (98), Expect = 1e-12
Identities = 106/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||| || || ||||| || || |||||||||||| | || || ||| || ||
Sbjct 27635 CAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCTGAT 27576
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || ||||| || ||| || || ||||| || |||||||| || ||||| || |||
Sbjct 27575 ACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAACAA 27516
Query 178044 CGACTTATCTTCGCCGGAAAACAG 178067
|| | || || || || || |||
Sbjct 27515 CGTTTGATTTTTGCTGGTAAGCAG 27492
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203639418881494
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |