Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24] 4,124 sequences; 49,331,761 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq111 84.2 5e-11 >seq111 Length=593702 Score = 84.2 bits (92), Expect = 5e-11 Identities = 220/333 (66%), Gaps = 2/333 (1%) Strand=Plus/Minus Query 281742 GTGAAGATATACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCCTCGACCCAAACTGA 281801 || || || || |||||||| || ||| | || || | || | | ||||| ||| Sbjct 137842 GTAAAAATGTATCTTGCACTGGCCGCATCTCTGCCGCCGAGAAGTCGAGTGCCAAATTGA 137783 Query 281802 CCCTCCGGCAACAACCAGTTAATGTTATTGCTCCCGACGTAATCCTGAGCCAGGTTGACG 281861 || ||| | ||| ||| ||||||||||| || || ||| ||||||| || | Sbjct 137782 CCAATCGGTAGCAATATGTTGATGTTATTGCTGCCCACAAAATTATGAGCCAAATTTATA 137723 Query 281862 ATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGCGCTGTGTTCGGCAACATAACCA 281921 || || | | || || || ||||||||||| || ||||| ||||| ||||| Sbjct 137722 ATGGTGCTCATCAGACTGACTTCGCCGTGGTGATAAGCTGAATGTTCAGCAACGGAACCA 137663 Query 281922 CTGAACTGTGCTACCTTCACGTCTGATGTCAAGTTGCGTTTGAAAGCGCAATATAATACT 281981 | ||| || || ||||| ||| | | |||||| |||||| | || ||| Sbjct 137662 GCAAGCTGAGCGACTTTCACTTCTCGTTTATCGTTGCGCTTGAAACATGTGAACAAAACT 137603 Query 281982 TTTCGTTGAGAAGGCTTGAAACCATCAACGACAGACGGAATGCTGCGTTCCAGGT-CATA 282040 || ||||| |||||| || |||||||| | || || ||||| || || | ||| Sbjct 137602 TTACGTTGTCCAGGCTTCAAGCCATCAACCATCGAAGGTATGCTACGCTCGTTATCCATG 137543 Query 282041 CCGCGAGAACAAAATAAGTTCCTTGTCAATGAA 282073 || ||||||||| | || ||||| ||||| Sbjct 137542 TTGC-TGAACAAAATCAACTCTTTGTCGATGAA 137511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057768105902120