Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24] 4,124 sequences; 49,331,761 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq3681 105 1e-17 seq1681 102 1e-16 seq1493 102 1e-16 seq2781 100 4e-16 seq2423 100 4e-16 seq3708 98.7 2e-15 seq2639 98.7 2e-15 seq99 91.5 2e-13 >seq3681 Length=661693 Score = 105 bits (116), Expect = 1e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | ||||| || || |||||||| || || | || | ||| || Sbjct 10034 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATC 10093 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| ||||| |||||||||||||||||||| || ||||| ||||| Sbjct 10094 TGATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCA 10153 Query 124658 ACAAAGGCTTATTTTTGCAGG 124678 ||| | || |||||||| || Sbjct 10154 GCAACGTCTGATTTTTGCTGG 10174 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| |||||| | || || | ||||| ||||| || || | || |||| | Sbjct 18337 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 18396 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| ||| ||||| || |||||||| |||||||| || ||||| |||||| Sbjct 18397 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATTCCACCGGATCAA 18456 Query 124659 CAAAGGCTTATTTTTGCAGG 124678 || ||||||||||||| || Sbjct 18457 CAGCGGCTTATTTTTGCTGG 18476 Score = 86.0 bits (94), Expect = 9e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 124670 TTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGA 124729 ||||| ||||||||| || ||||||||| |||| || |||||||||||||||||||| Sbjct 19720 TTTTGTAGGAAAACAGTTGGAGGATAGTAGAACGTTGTCCGATTATAATATTCAAAAAGA 19779 Query 124730 ATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 | || ||||||| ||| | ||| | || |||||| Sbjct 19780 AAGCACACTGCATTTAGTTCTTCGTCTTCGCGGTGGT 19816 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | ||||| ||||| || ||||| || || | || | ||| || Sbjct 19532 AATGCAAATTTTTGTTAAGACCCTAACTGGGAAAACCATCACGTTGGAAGTGGAACCATC 19591 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| || ||| | ||| ||| ||||||||||| || || || || || ||||| Sbjct 19592 TGATACTGTTGAGAATGTGAAAGGGAAGATTCAAGATAAGGAGGGAATTCCTCCAGATCA 19651 Query 124658 ACAAAGGCTTATTTTTGCAGG 124678 ||| | || |||||||| || Sbjct 19652 ACAGCGTCTGATTTTTGCTGG 19672 >seq1681 Length=34527 Score = 102 bits (112), Expect = 1e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | ||||| || || |||||||| || || | || | ||| || Sbjct 29700 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATC 29759 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| ||||| || ||||||||||||||||| || ||||| ||||| Sbjct 29760 TGATACAATAGAGAATGTAAAAGGCAAGATTCAAGATAAAGAAGGAATTCCACCAGATCA 29819 Query 124658 ACAAAGGCTTATTTTTGCAGG 124678 ||| | || |||||||| || Sbjct 29820 GCAACGTCTGATTTTTGCTGG 29840 >seq1493 Length=366 Score = 102 bits (112), Expect = 1e-16 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || | ||||| ||||| |||||||| || || |||| | ||| || Sbjct 238 AATGCAAATTTTCGTTAAGACTCTAACCGGCAAAACCATCACCTTAGAAGTAGAACCATC 297 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| ||||| |||||||||||||||||||| || ||||| ||||| Sbjct 298 TGATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCGGATCA 357 Query 124658 ACAA 124661 |||| Sbjct 358 ACAA 361 >seq2781 Length=253 Score = 100 bits (110), Expect = 4e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || | ||||| || || || ||||| |||||| | || | ||| || Sbjct 39 AATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 98 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| | ||| ||||||||||||||||| || || ||||| ||||| Sbjct 99 TGATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 158 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATT 124687 |||| | | |||||||| || || || || Sbjct 159 ACAACGTTTGATTTTTGCTGGTAAGCAGTT 188 >seq2423 Length=9717 Score = 100 bits (110), Expect = 4e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || | ||||| || || || ||||| |||||| | || | ||| || Sbjct 2467 AATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 2408 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| | ||| ||||||||||||||||| || || ||||| ||||| Sbjct 2407 TGATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 2348 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATT 124687 |||| | | |||||||| || || || || Sbjct 2347 ACAACGTTTGATTTTTGCTGGTAAGCAGTT 2318 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| |||||| | || || | ||||| ||||| || || | || |||| | Sbjct 3279 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 3220 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| ||| ||||| || |||||||| |||||||| || ||||| |||||| Sbjct 3219 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCAGATCAA 3160 Query 124659 CAAAGGCTTATTTTTGCAGG 124678 || ||||||||||||| || Sbjct 3159 CAGCGGCTTATTTTTGCTGG 3140 >seq3708 Length=1771 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 124545 ATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACA 124604 || ||| | ||||| || || |||||||| || || | || | ||| || ||||||| Sbjct 1771 ATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCTGATACA 1712 Query 124605 ATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGG 124664 || ||| ||||| |||||||||||||||||||| || ||||| ||||| ||| | Sbjct 1711 ATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAGCAACGT 1652 Query 124665 CTTATTTTTGCAGGAAAACAATTA 124688 || |||||||| || | | ||||| Sbjct 1651 CTGATTTTTGCTGGTATAGAATTA 1628 >seq2639 Length=264 Score = 98.7 bits (108), Expect = 2e-15 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || | ||||| || || |||||||| || || |||| | ||| || Sbjct 136 AATGCAAATTTTCGTTAAGACCCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATC 195 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| ||||| |||||||||||||||||||| || ||||| ||||| Sbjct 196 TGATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCGGATCA 255 Query 124658 ACAA 124661 |||| Sbjct 256 ACAA 259 >seq99 Length=156819 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| ||||| | |||||||| || || ||||||||||| |||| ||||| || Sbjct 40936 ATGCAGATATTCGTGAAGACACTTACTGGAAAAACTATAACACTAGAAGTTGAACCATCA 40877 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| | ||| |||||||| ||||| ||||| || || |||||||| Sbjct 40876 GACACCATCGAAAATGTTAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTCCTGATCAG 40817 Query 124659 CAAAGGCTTATTTTTGCAGGAAA 124681 ||||| | || |||||||| || Sbjct 40816 CAAAGATTAATCTTTGCAGGTAA 40794 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | || ||| |||| || ||||| || || | || | || || Sbjct 39969 AATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATC 39910 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| ||| ||| ||||| |||||||||||||| ||||| || ||||||||||| Sbjct 39909 TGATACGATTGAAAATGTAAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCA 39850 Query 124658 ACAAAGGCTTATTTTTGCAGG 124678 ||| | | || ||||| || Sbjct 39849 GCAACGATTGATATTTGCTGG 39829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755417056243200